Wall clock time and date at job start Tue Mar 31 2020 10:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46940 * 2 1 4 4 C 1.53001 * 109.46803 * 240.00173 * 2 1 3 5 5 C 1.50700 * 109.47536 * 60.00169 * 4 2 1 6 6 H 1.07994 * 119.99734 * 359.97438 * 5 4 2 7 7 C 1.37869 * 119.99892 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00051 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 120.00498 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47147 * 89.99725 * 9 7 5 11 11 H 1.48500 * 109.47466 * 210.00194 * 9 7 5 12 12 H 1.48508 * 109.46689 * 330.00056 * 9 7 5 13 13 C 1.53001 * 109.47241 * 120.00040 * 2 1 3 14 14 N 1.46897 * 109.46834 * 300.00209 * 13 2 1 15 15 C 1.46900 * 111.00039 * 179.97438 * 14 13 2 16 16 C 1.52994 * 109.47525 * 179.97438 * 15 14 13 17 17 C 1.52998 * 109.55344 * 60.20275 * 16 15 14 18 18 C 1.53152 * 109.55377 * 300.00262 * 16 15 14 19 19 C 1.53054 * 109.41277 * 181.43041 * 18 16 15 20 20 O 1.43039 * 109.44160 * 59.31780 * 19 18 16 21 21 C 1.42577 * 113.85218 * 301.26935 * 20 19 18 22 22 C 1.53392 * 113.62776 * 188.22010 * 21 20 19 23 23 C 1.53856 * 86.97982 * 89.43676 * 22 21 20 24 24 C 1.53420 * 113.57053 * 286.14572 * 21 20 19 25 25 C 1.52812 * 112.93638 * 57.11328 * 21 20 19 26 26 H 1.08994 * 109.46995 * 300.00204 * 1 2 3 27 27 H 1.08997 * 109.47246 * 60.00201 * 1 2 3 28 28 H 1.08998 * 109.47043 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46939 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.46987 * 299.99958 * 3 2 1 31 31 H 1.08994 * 109.47443 * 60.00070 * 3 2 1 32 32 H 1.09004 * 109.46482 * 180.02562 * 4 2 1 33 33 H 1.08997 * 109.47065 * 299.99475 * 4 2 1 34 34 H 0.96994 * 120.00407 * 179.97438 * 8 7 5 35 35 H 1.08992 * 109.47193 * 180.02562 * 13 2 1 36 36 H 1.08998 * 109.46790 * 59.99615 * 13 2 1 37 37 H 1.00905 * 111.00008 * 303.95077 * 14 13 2 38 38 H 1.09008 * 109.46797 * 59.99956 * 15 14 13 39 39 H 1.09002 * 109.47177 * 300.00366 * 15 14 13 40 40 H 1.09005 * 109.47262 * 299.80044 * 17 16 15 41 41 H 1.09005 * 109.46855 * 59.79893 * 17 16 15 42 42 H 1.08998 * 109.47683 * 179.79836 * 17 16 15 43 43 H 1.08996 * 109.48007 * 61.44930 * 18 16 15 44 44 H 1.08997 * 109.48090 * 301.41058 * 18 16 15 45 45 H 1.09009 * 109.47318 * 299.32912 * 19 18 16 46 46 H 1.09000 * 109.47796 * 179.31643 * 19 18 16 47 47 H 1.09001 * 113.63045 * 334.91687 * 22 21 20 48 48 H 1.08999 * 113.63327 * 203.95814 * 22 21 20 49 49 H 1.08995 * 113.60265 * 139.72919 * 23 22 21 50 50 H 1.09002 * 113.60698 * 270.60445 * 23 22 21 51 51 H 1.09002 * 113.63499 * 155.98823 * 24 21 20 52 52 H 1.09002 * 113.63341 * 25.03350 * 24 21 20 53 53 H 1.09004 * 109.56352 * 65.87797 * 25 21 20 54 54 H 1.08998 * 109.56844 * 186.22394 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4798 6 1 0.9165 0.8670 -2.3807 7 6 1.8712 -0.4816 -3.7319 8 7 1.4324 0.1381 -4.8058 9 14 2.9462 -1.9996 -3.9034 10 1 2.0885 -3.2110 -3.9489 11 1 3.7382 -1.9065 -5.1562 12 1 3.8666 -2.0881 -2.7413 13 6 2.0401 -0.7213 1.2492 14 7 1.5503 -0.0288 2.4486 15 6 2.0209 -0.6952 3.6703 16 6 1.4923 0.0533 4.8955 17 6 -0.0375 0.0509 4.8765 18 6 2.0029 1.4971 4.8738 19 6 1.5017 2.2326 6.1189 20 8 1.9747 1.5622 7.2906 21 6 1.5634 0.2001 7.3811 22 6 1.9010 -0.4560 8.7259 23 6 0.5303 0.0391 9.2190 24 6 0.0833 0.0291 7.7470 25 6 1.9907 -0.6325 6.1730 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.1300 -0.7216 -1.2490 33 1 1.6767 -1.7489 -1.2493 34 1 1.6673 -0.1929 -5.6868 35 1 3.1300 -0.7209 1.2495 36 1 1.6767 -1.7489 1.2492 37 1 1.8198 0.9436 2.4401 38 1 3.1108 -0.6953 3.6873 39 1 1.6571 -1.7226 3.6868 40 1 -0.3905 0.5468 3.9721 41 1 -0.3994 -0.9772 4.8919 42 1 -0.4127 0.5813 5.7516 43 1 1.6325 2.0002 3.9807 44 1 3.0928 1.4971 4.8657 45 1 0.4117 2.2426 6.1210 46 1 1.8746 3.2568 6.1107 47 1 2.7435 0.0077 9.2390 48 1 1.9806 -1.5419 8.6746 49 1 0.0025 -0.6845 9.8403 50 1 0.5588 1.0356 9.6598 51 1 -0.3393 -0.9227 7.4251 52 1 -0.5361 0.8831 7.4727 53 1 3.0779 -0.7068 6.1470 54 1 1.5566 -1.6298 6.2450 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886342437.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:36 Heat of formation + Delta-G solvation = -60.454584 kcal Electronic energy + Delta-G solvation = -27391.192377 eV Core-core repulsion = 23941.087427 eV Total energy + Delta-G solvation = -3450.104950 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 309.241 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.88009 -39.38995 -37.85433 -36.53781 -34.83066 -33.59378 -30.78038 -29.74348 -28.80352 -27.93716 -27.84108 -26.39141 -25.80184 -24.41707 -23.94478 -22.99807 -20.24169 -19.60533 -19.22388 -18.87239 -17.27446 -17.22005 -16.59410 -16.40531 -15.95804 -15.80858 -15.53351 -15.36425 -15.03852 -14.98216 -14.67463 -14.39671 -14.17518 -14.11667 -13.79449 -13.50345 -13.21625 -13.01226 -12.82289 -12.78377 -12.73071 -12.50921 -12.40776 -12.24526 -12.23454 -12.11483 -12.04926 -11.73715 -11.71016 -11.62215 -11.42623 -11.32582 -11.14783 -11.02924 -10.86495 -10.70454 -10.64361 -10.09654 -9.21909 -8.22094 -6.22203 1.34973 1.36447 1.47396 2.38802 2.75646 3.12842 3.22958 3.62972 3.67565 3.77234 3.82510 3.94468 4.03752 4.11737 4.15240 4.19632 4.32090 4.34919 4.37270 4.50682 4.62311 4.66820 4.74617 4.76993 4.80978 4.84248 4.86424 4.89380 4.91827 4.93584 4.97134 5.03644 5.04988 5.07015 5.08170 5.09857 5.18764 5.24452 5.26705 5.36604 5.39167 5.39898 5.45321 5.47121 5.53485 5.62306 5.64474 5.76739 5.82358 6.15725 6.40164 6.41975 6.55929 6.85164 7.40229 8.94101 Molecular weight = 309.24amu Principal moments of inertia in cm(-1) A = 0.033732 B = 0.002591 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.864877 B =10803.925597 C =11007.024456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.047 4.047 3 C -0.124 4.124 4 C -0.004 4.004 5 C -0.502 4.502 6 H 0.045 0.955 7 C 0.000 4.000 8 N -0.954 5.954 9 Si 0.940 3.060 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.250 1.250 13 C 0.080 3.920 14 N -0.679 5.679 15 C 0.072 3.928 16 C -0.049 4.049 17 C -0.140 4.140 18 C -0.146 4.146 19 C 0.060 3.940 20 O -0.377 6.377 21 C 0.089 3.911 22 C -0.127 4.127 23 C -0.136 4.136 24 C -0.157 4.157 25 C -0.120 4.120 26 H 0.067 0.933 27 H 0.026 0.974 28 H 0.036 0.964 29 H 0.042 0.958 30 H 0.036 0.964 31 H 0.066 0.934 32 H 0.011 0.989 33 H 0.011 0.989 34 H 0.262 0.738 35 H 0.022 0.978 36 H 0.064 0.936 37 H 0.341 0.659 38 H 0.023 0.977 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.100 0.900 47 H 0.068 0.932 48 H 0.107 0.893 49 H 0.080 0.920 50 H 0.074 0.926 51 H 0.098 0.902 52 H 0.069 0.931 53 H 0.062 0.938 54 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.085 -1.135 29.983 30.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.047 4.047 3 C -0.181 4.181 4 C -0.042 4.042 5 C -0.540 4.540 6 H 0.063 0.937 7 C -0.196 4.196 8 N -0.596 5.596 9 Si 0.765 3.235 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.174 1.174 13 C -0.049 4.049 14 N -0.312 5.312 15 C -0.058 4.058 16 C -0.050 4.050 17 C -0.197 4.197 18 C -0.184 4.184 19 C -0.016 4.016 20 O -0.296 6.296 21 C 0.049 3.951 22 C -0.164 4.164 23 C -0.173 4.173 24 C -0.195 4.195 25 C -0.158 4.158 26 H 0.086 0.914 27 H 0.045 0.955 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.029 0.971 33 H 0.029 0.971 34 H 0.071 0.929 35 H 0.040 0.960 36 H 0.083 0.917 37 H 0.162 0.838 38 H 0.041 0.959 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.118 0.882 47 H 0.087 0.913 48 H 0.125 0.875 49 H 0.098 0.902 50 H 0.093 0.907 51 H 0.116 0.884 52 H 0.087 0.913 53 H 0.081 0.919 54 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.395 -1.372 29.949 29.983 hybrid contribution 1.280 -0.286 -1.356 1.886 sum 0.885 -1.658 28.592 28.654 Atomic orbital electron populations 1.21494 0.94538 1.00304 1.00094 1.20335 0.96101 0.95302 0.93009 1.21687 0.99656 0.95993 1.00761 1.19608 0.95543 0.95410 0.93626 1.21419 1.29983 1.12138 0.90436 0.93688 1.25924 0.97636 1.00199 0.95811 1.70061 1.48305 1.42854 0.98430 0.85802 0.79710 0.80086 0.77873 1.19616 1.21461 1.17414 1.21847 0.96041 0.97772 0.89264 1.60511 1.63475 1.06512 1.00690 1.21978 0.96396 0.98317 0.89070 1.20506 0.96717 0.94404 0.93355 1.22015 0.93480 1.01967 1.02213 1.22211 1.00910 0.96081 0.99178 1.22668 0.98981 0.96112 0.83817 1.87861 1.75326 1.23303 1.43095 1.22308 0.95204 0.82518 0.95030 1.23018 0.98363 1.00980 0.94022 1.22814 0.96447 1.01654 0.96418 1.23590 0.96221 1.02889 0.96768 1.22051 1.01123 0.99332 0.93333 0.91381 0.95458 0.94434 0.93929 0.94488 0.91557 0.97066 0.97100 0.92909 0.96003 0.91722 0.83793 0.95921 0.91195 0.92458 0.92932 0.91485 0.90264 0.92096 0.92241 0.88184 0.91334 0.87509 0.90173 0.90703 0.88369 0.91263 0.91907 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.99 8.06 71.98 0.58 -3.41 16 2 C -0.05 -1.74 0.60 -52.18 -0.03 -1.78 16 3 C -0.12 -4.40 7.89 71.98 0.57 -3.83 16 4 C 0.00 -0.19 3.11 29.85 0.09 -0.09 16 5 C -0.50 -28.24 8.20 25.60 0.21 -28.03 16 6 H 0.04 2.77 5.92 -2.91 -0.02 2.75 16 7 C 0.00 0.00 5.47 84.65 0.46 0.46 16 8 N -0.95 -60.24 13.96 21.44 0.30 -59.94 16 9 Si 0.94 44.96 27.47 68.60 1.88 46.84 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 11 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 12 H -0.25 -11.18 6.54 99.48 0.65 -10.52 16 13 C 0.08 2.41 4.65 86.30 0.40 2.81 16 14 N -0.68 -16.40 4.94 -513.90 -2.54 -18.94 16 15 C 0.07 1.46 4.66 86.30 0.40 1.86 16 16 C -0.05 -0.84 0.60 -52.03 -0.03 -0.87 16 17 C -0.14 -2.40 7.22 71.98 0.52 -1.88 16 18 C -0.15 -2.51 4.51 30.66 0.14 -2.37 16 19 C 0.06 0.99 6.48 72.00 0.47 1.46 16 20 O -0.38 -7.30 10.45 -148.98 -1.56 -8.86 16 21 C 0.09 1.39 0.98 -10.58 -0.01 1.38 16 22 C -0.13 -1.67 7.47 31.01 0.23 -1.44 16 23 C -0.14 -1.69 8.02 31.17 0.25 -1.44 16 24 C -0.16 -2.09 4.95 31.02 0.15 -1.94 16 25 C -0.12 -1.87 4.17 30.64 0.13 -1.74 16 26 H 0.07 2.19 7.60 -2.39 -0.02 2.18 16 27 H 0.03 1.17 6.62 -2.39 -0.02 1.15 16 28 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.04 1.55 6.62 -2.39 -0.02 1.53 16 31 H 0.07 1.91 6.57 -2.39 -0.02 1.90 16 32 H 0.01 0.52 7.20 -2.38 -0.02 0.50 16 33 H 0.01 0.49 7.57 -2.39 -0.02 0.48 16 34 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 35 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.34 7.94 4.85 -89.69 -0.44 7.51 16 38 H 0.02 0.48 8.14 -2.38 -0.02 0.46 16 39 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.06 1.15 7.62 -2.38 -0.02 1.13 16 41 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.07 1.03 3.18 -2.39 -0.01 1.02 16 43 H 0.08 1.36 6.66 -2.39 -0.02 1.35 16 44 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.06 0.92 5.76 -2.38 -0.01 0.91 16 46 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16 47 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 48 H 0.11 1.08 8.09 -2.39 -0.02 1.06 16 49 H 0.08 0.78 8.14 -2.39 -0.02 0.77 16 50 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 51 H 0.10 1.14 7.87 -2.39 -0.02 1.13 16 52 H 0.07 0.99 6.26 -2.39 -0.01 0.97 16 53 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 54 H 0.08 1.15 8.04 -2.39 -0.02 1.13 16 Total: -1.00 -64.04 385.21 2.98 -61.06 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 0.36 Total: 20.69 kcal Atomic # 6 Polarization: -45.38 SS G_CDS: 4.53 Total: -40.85 kcal Atomic # 7 Polarization: -76.64 SS G_CDS: -2.24 Total: -78.88 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: -1.56 Total: -8.86 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.84 kcal Total: -64.04 2.98 -61.06 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886342437.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.608 kcal (2) G-P(sol) polarization free energy of solvation -64.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds