Wall clock time and date at job start Tue Mar 31 2020 09:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34780 * 119.99604 * 2 1 4 4 O 1.21284 * 119.99687 * 184.55695 * 3 2 1 5 5 C 1.50702 * 120.00108 * 4.56019 * 3 2 1 6 6 H 1.09001 * 109.87990 * 9.84529 * 5 3 2 7 7 C 1.54319 * 109.88789 * 248.64480 * 5 3 2 8 8 C 1.55133 * 103.02173 * 218.31009 * 7 5 3 9 9 C 1.54910 * 101.65143 * 35.65575 * 8 7 5 10 10 N 1.47438 * 109.88614 * 130.87762 * 5 3 2 11 11 C 1.46903 * 111.00512 * 356.14700 * 10 5 3 12 12 C 1.46492 * 120.00114 * 179.97438 * 2 1 3 13 13 H 1.08997 * 110.33036 * 182.01119 * 12 2 1 14 14 C 1.50121 * 110.25432 * 304.02672 * 12 2 1 15 15 C 1.54846 * 110.81677 * 216.65313 * 14 12 2 16 16 C 1.54400 * 110.06908 * 321.07469 * 15 14 12 17 17 N 1.43431 * 116.39075 * 318.64709 * 16 15 14 18 18 C 1.36940 * 120.53965 * 271.73276 * 17 16 15 19 19 H 1.08001 * 119.99653 * 38.33738 * 18 17 16 20 20 C 1.38804 * 120.00407 * 218.34093 * 18 17 16 21 21 N 1.31620 * 119.99838 * 21.85594 * 20 18 17 22 22 Si 1.86801 * 120.00404 * 201.85955 * 20 18 17 23 23 H 1.48508 * 109.46713 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47210 * 239.99900 * 22 20 18 25 25 H 1.48494 * 109.47480 * 119.99601 * 22 20 18 26 26 C 1.50167 * 118.92873 * 91.45646 * 17 16 15 27 27 C 1.46235 * 107.53297 * 289.84518 * 26 17 16 28 28 H 1.09000 * 109.47064 * 275.86037 * 1 2 3 29 29 H 1.09000 * 109.46650 * 35.86614 * 1 2 3 30 30 H 1.09000 * 109.46846 * 155.85983 * 1 2 3 31 31 H 1.09002 * 110.70261 * 336.69984 * 7 5 3 32 32 H 1.08999 * 110.70556 * 99.92400 * 7 5 3 33 33 H 1.08996 * 110.99190 * 277.56541 * 8 7 5 34 34 H 1.09000 * 111.02607 * 153.75939 * 8 7 5 35 35 H 1.09000 * 110.37215 * 204.09828 * 9 8 7 36 36 H 1.08998 * 110.37314 * 81.75910 * 9 8 7 37 37 H 1.08994 * 109.46723 * 70.52876 * 11 10 5 38 38 H 1.09002 * 109.47090 * 190.52748 * 11 10 5 39 39 H 1.08998 * 109.46591 * 310.53379 * 11 10 5 40 40 H 1.09004 * 109.20758 * 336.99547 * 14 12 2 41 41 H 1.08998 * 109.21295 * 96.30620 * 14 12 2 42 42 H 1.09006 * 109.35528 * 81.33851 * 15 14 12 43 43 H 1.08999 * 109.35685 * 201.05666 * 15 14 12 44 44 H 1.09003 * 107.88928 * 196.92922 * 16 15 14 45 45 H 1.08999 * 108.10262 * 80.53813 * 16 15 14 46 46 H 0.97003 * 120.00271 * 6.80951 * 21 20 18 47 47 H 1.09009 * 109.84199 * 49.34608 * 26 17 16 48 48 H 1.08994 * 109.85440 * 170.26601 * 26 17 16 49 49 H 1.09004 * 108.52527 * 179.64387 * 27 26 17 50 50 H 1.08997 * 108.52275 * 297.16720 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3489 1.1690 -0.0835 5 6 1.3889 2.4703 0.1038 6 1 0.3433 2.2780 0.3442 7 6 1.4915 3.2426 -1.2283 8 6 1.6365 4.7167 -0.7675 9 6 2.4879 4.5605 0.5173 10 7 1.9960 3.3167 1.1472 11 6 3.0847 2.6077 1.8329 12 6 2.1976 -1.2686 0.0006 13 1 3.2715 -1.0858 0.0364 14 6 1.7749 -2.1123 1.1682 15 6 2.9797 -2.8943 1.7467 16 6 3.8872 -3.3927 0.6013 17 7 3.2225 -3.9137 -0.5580 18 6 2.8798 -5.2377 -0.6273 19 1 2.5170 -5.7483 0.2525 20 6 2.9986 -5.9235 -1.8282 21 7 3.8108 -5.4776 -2.7631 22 14 2.0060 -7.4793 -2.1178 23 1 1.1754 -7.7664 -0.9206 24 1 2.9287 -8.6165 -2.3638 25 1 1.1253 -7.2920 -3.2985 26 6 2.9029 -2.9826 -1.6919 27 6 1.8420 -2.0841 -1.2385 28 1 -0.3633 0.1049 1.0223 29 1 -0.3632 0.8328 -0.6021 30 1 -0.3633 -0.9378 -0.4203 31 1 2.3701 2.9262 -1.7905 32 1 0.5860 3.1113 -1.8206 33 1 0.6636 5.1524 -0.5405 34 1 2.1630 5.3102 -1.5150 35 1 2.3313 5.4102 1.1819 36 1 3.5437 4.4656 0.2636 37 1 3.9329 2.5032 1.1563 38 1 3.3896 3.1741 2.7129 39 1 2.7394 1.6199 2.1380 40 1 1.3593 -1.4688 1.9437 41 1 1.0117 -2.8189 0.8425 42 1 3.5521 -2.2408 2.4051 43 1 2.6155 -3.7502 2.3149 44 1 4.5336 -4.1736 1.0020 45 1 4.5206 -2.5636 0.2859 46 1 4.3987 -4.7286 -2.5780 47 1 3.7886 -2.4051 -1.9573 48 1 2.5616 -3.5539 -2.5551 49 1 1.6014 -1.3957 -2.0487 50 1 0.9551 -2.6785 -1.0190 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948242543.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:50:21 Heat of formation + Delta-G solvation = 8.072969 kcal Electronic energy + Delta-G solvation = -27967.578849 eV Core-core repulsion = 24416.905134 eV Total energy + Delta-G solvation = -3550.673715 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.94688 -38.83936 -37.21597 -35.46472 -33.16959 -32.22920 -31.64504 -30.59300 -29.36644 -27.01058 -26.02651 -25.65843 -24.28231 -23.24322 -22.13925 -21.50323 -19.94977 -19.27461 -18.69873 -17.61441 -17.07110 -16.27734 -15.89706 -15.50693 -15.14120 -14.60017 -14.44470 -14.12463 -13.93752 -13.68249 -13.56342 -13.46614 -13.25037 -12.93501 -12.49075 -12.42615 -12.30599 -12.01078 -11.91212 -11.72789 -11.61254 -11.35966 -11.30856 -11.17065 -11.03586 -10.87596 -10.64027 -10.35714 -10.25917 -10.08455 -9.93928 -9.83714 -9.76157 -9.19911 -8.58673 -8.35753 -8.26149 -6.79660 -6.02462 -3.35960 2.52682 3.03898 3.49276 3.51541 3.65322 3.86017 4.25127 4.40251 4.51921 4.58177 4.83447 5.03785 5.06401 5.09775 5.20147 5.23150 5.34213 5.36382 5.46821 5.49134 5.51292 5.52773 5.59334 5.60220 5.63376 5.66852 5.81657 5.91622 5.92975 5.95535 6.03056 6.04024 6.28047 6.32467 6.35434 6.49547 6.63818 6.65709 6.72471 6.76079 6.83851 6.87095 6.98206 7.06756 7.13767 7.49937 8.15006 8.20913 8.60082 9.17227 9.82673 10.35348 11.20451 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.026943 B = 0.003495 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.978064 B = 8009.081092 C = 8253.128703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.603 5.603 3 C 0.502 3.498 4 O -0.539 6.539 5 C 0.049 3.951 6 H 0.105 0.895 7 C -0.129 4.129 8 C -0.126 4.126 9 C 0.038 3.962 10 N -0.510 5.510 11 C 0.007 3.993 12 C 0.144 3.856 13 H 0.104 0.896 14 C -0.113 4.113 15 C -0.139 4.139 16 C 0.155 3.845 17 N -0.590 5.590 18 C -0.349 4.349 19 H 0.049 0.951 20 C -0.018 4.018 21 N -0.912 5.912 22 Si 1.068 2.932 23 H -0.292 1.292 24 H -0.293 1.293 25 H -0.290 1.290 26 C 0.141 3.859 27 C -0.134 4.134 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.052 0.948 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.045 0.955 41 H 0.068 0.932 42 H 0.049 0.951 43 H 0.054 0.946 44 H 0.039 0.961 45 H 0.024 0.976 46 H 0.270 0.730 47 H 0.026 0.974 48 H 0.083 0.917 49 H 0.043 0.957 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.748 18.493 5.719 20.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.336 5.336 3 C 0.289 3.711 4 O -0.416 6.416 5 C -0.063 4.063 6 H 0.122 0.878 7 C -0.168 4.168 8 C -0.164 4.164 9 C -0.090 4.090 10 N -0.235 5.235 11 C -0.141 4.141 12 C 0.042 3.958 13 H 0.122 0.878 14 C -0.151 4.151 15 C -0.180 4.180 16 C 0.026 3.974 17 N -0.312 5.312 18 C -0.479 4.479 19 H 0.067 0.933 20 C -0.221 4.221 21 N -0.550 5.550 22 Si 0.898 3.102 23 H -0.218 1.218 24 H -0.220 1.220 25 H -0.217 1.217 26 C 0.016 3.984 27 C -0.174 4.174 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.057 0.943 45 H 0.042 0.958 46 H 0.081 0.919 47 H 0.044 0.956 48 H 0.101 0.899 49 H 0.062 0.938 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.853 17.395 4.918 19.709 hybrid contribution 0.729 0.813 0.761 1.331 sum -7.123 18.208 5.679 20.360 Atomic orbital electron populations 1.21774 0.80008 1.03337 1.01585 1.48153 1.06874 1.06215 1.72309 1.20995 0.88129 0.85584 0.76362 1.90662 1.14193 1.87052 1.49676 1.22730 1.00071 0.90534 0.92916 0.87770 1.22736 1.03337 0.95006 0.95706 1.22690 1.00771 0.95991 0.96941 1.23157 0.97913 0.92848 0.95056 1.64062 1.30624 1.04382 1.24426 1.22947 0.94311 0.98064 0.98777 1.20527 0.97762 0.81215 0.96323 0.87808 1.21745 0.99290 0.97641 0.96421 1.22737 0.97300 0.98486 0.99494 1.20259 0.92329 0.96403 0.88392 1.43946 1.67834 1.05261 1.14183 1.19865 1.42872 0.85948 0.99198 0.93312 1.25945 0.98830 1.02486 0.94841 1.70694 1.20119 1.27407 1.36795 0.83505 0.75870 0.75576 0.75293 1.21796 1.22038 1.21700 1.20295 0.94243 0.90884 0.92966 1.21321 1.02002 0.97828 0.96247 0.92568 0.91532 0.90221 0.90441 0.90104 0.90409 0.90442 0.89904 0.92989 0.91467 0.92105 0.91967 0.93640 0.91323 0.93210 0.92676 0.94252 0.95820 0.91893 0.95566 0.89865 0.93838 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 8.79 59.85 0.53 1.34 16 2 N -0.60 -8.71 2.64 -175.86 -0.46 -9.18 16 3 C 0.50 7.46 4.84 -10.98 -0.05 7.41 16 4 O -0.54 -9.83 13.00 5.55 0.07 -9.75 16 5 C 0.05 0.57 3.26 -67.88 -0.22 0.34 16 6 H 0.10 1.05 6.00 -51.93 -0.31 0.74 16 7 C -0.13 -1.29 6.46 -24.91 -0.16 -1.45 16 8 C -0.13 -1.03 7.08 -24.60 -0.17 -1.21 16 9 C 0.04 0.37 6.73 -2.29 -0.02 0.36 16 10 N -0.51 -6.04 5.44 -232.95 -1.27 -7.31 16 11 C 0.01 0.09 8.16 60.07 0.49 0.58 16 12 C 0.14 2.50 2.29 -69.60 -0.16 2.34 16 13 H 0.10 2.10 5.13 -51.93 -0.27 1.83 16 14 C -0.11 -1.92 4.82 -27.19 -0.13 -2.05 16 15 C -0.14 -2.55 6.40 -25.02 -0.16 -2.71 16 16 C 0.15 3.38 5.13 -4.93 -0.03 3.36 16 17 N -0.59 -14.54 2.27 -175.41 -0.40 -14.94 16 18 C -0.35 -9.59 9.42 -15.06 -0.14 -9.74 16 19 H 0.05 1.37 7.92 -52.49 -0.42 0.96 16 20 C -0.02 -0.50 4.79 -17.43 -0.08 -0.58 16 21 N -0.91 -27.07 12.45 55.49 0.69 -26.38 16 22 Si 1.07 25.05 29.97 -169.99 -5.09 19.95 16 23 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 C 0.14 3.24 4.70 -5.21 -0.02 3.21 16 27 C -0.13 -2.55 4.03 -30.18 -0.12 -2.67 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.56 6.73 -51.93 -0.35 0.21 16 30 H 0.08 0.88 7.14 -51.93 -0.37 0.51 16 31 H 0.08 0.92 7.77 -51.93 -0.40 0.52 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.55 7.61 -51.93 -0.40 0.16 16 37 H 0.07 1.02 5.79 -51.93 -0.30 0.72 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.90 6.87 -51.93 -0.36 0.55 16 40 H 0.04 0.70 7.83 -51.93 -0.41 0.30 16 41 H 0.07 1.25 6.83 -51.93 -0.35 0.90 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.04 0.90 8.00 -51.93 -0.42 0.48 16 45 H 0.02 0.51 6.89 -51.93 -0.36 0.16 16 46 H 0.27 8.16 7.19 -40.82 -0.29 7.86 16 47 H 0.03 0.61 8.13 -51.92 -0.42 0.19 16 48 H 0.08 2.14 6.34 -51.93 -0.33 1.81 16 49 H 0.04 0.78 8.02 -51.93 -0.42 0.36 16 50 H 0.06 1.23 6.67 -51.93 -0.35 0.88 16 LS Contribution 365.97 15.07 5.52 5.52 Total: -1.00 -31.12 365.97 -10.09 -41.21 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -8.69 Total: 2.34 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -0.46 Total: -1.45 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -1.44 Total: -57.81 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.07 Total: -9.75 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -5.09 Total: 19.95 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.12 -10.09 -41.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948242543.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.285 kcal (2) G-P(sol) polarization free energy of solvation -31.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds