Wall clock time and date at job start Tue Mar 31 2020 09:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34780 * 119.99604 * 2 1 4 4 O 1.21284 * 119.99687 * 184.55695 * 3 2 1 5 5 C 1.50702 * 120.00108 * 4.56019 * 3 2 1 6 6 H 1.09001 * 109.87990 * 9.84529 * 5 3 2 7 7 C 1.54319 * 109.88789 * 248.64480 * 5 3 2 8 8 C 1.55133 * 103.02173 * 218.31009 * 7 5 3 9 9 C 1.54910 * 101.65143 * 35.65575 * 8 7 5 10 10 N 1.47438 * 109.88614 * 130.87762 * 5 3 2 11 11 C 1.46903 * 111.00512 * 356.14700 * 10 5 3 12 12 C 1.46492 * 120.00114 * 179.97438 * 2 1 3 13 13 H 1.08997 * 110.33036 * 182.01119 * 12 2 1 14 14 C 1.50121 * 110.25432 * 304.02672 * 12 2 1 15 15 C 1.54846 * 110.81677 * 216.65313 * 14 12 2 16 16 C 1.54400 * 110.06908 * 321.07469 * 15 14 12 17 17 N 1.43431 * 116.39075 * 318.64709 * 16 15 14 18 18 C 1.36940 * 120.53965 * 271.73276 * 17 16 15 19 19 H 1.08001 * 119.99653 * 38.33738 * 18 17 16 20 20 C 1.38804 * 120.00407 * 218.34093 * 18 17 16 21 21 N 1.31620 * 119.99838 * 21.85594 * 20 18 17 22 22 Si 1.86801 * 120.00404 * 201.85955 * 20 18 17 23 23 H 1.48508 * 109.46713 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47210 * 239.99900 * 22 20 18 25 25 H 1.48494 * 109.47480 * 119.99601 * 22 20 18 26 26 C 1.50167 * 118.92873 * 91.45646 * 17 16 15 27 27 C 1.46235 * 107.53297 * 289.84518 * 26 17 16 28 28 H 1.09000 * 109.47064 * 275.86037 * 1 2 3 29 29 H 1.09000 * 109.46650 * 35.86614 * 1 2 3 30 30 H 1.09000 * 109.46846 * 155.85983 * 1 2 3 31 31 H 1.09002 * 110.70261 * 336.69984 * 7 5 3 32 32 H 1.08999 * 110.70556 * 99.92400 * 7 5 3 33 33 H 1.08996 * 110.99190 * 277.56541 * 8 7 5 34 34 H 1.09000 * 111.02607 * 153.75939 * 8 7 5 35 35 H 1.09000 * 110.37215 * 204.09828 * 9 8 7 36 36 H 1.08998 * 110.37314 * 81.75910 * 9 8 7 37 37 H 1.08994 * 109.46723 * 70.52876 * 11 10 5 38 38 H 1.09002 * 109.47090 * 190.52748 * 11 10 5 39 39 H 1.08998 * 109.46591 * 310.53379 * 11 10 5 40 40 H 1.09004 * 109.20758 * 336.99547 * 14 12 2 41 41 H 1.08998 * 109.21295 * 96.30620 * 14 12 2 42 42 H 1.09006 * 109.35528 * 81.33851 * 15 14 12 43 43 H 1.08999 * 109.35685 * 201.05666 * 15 14 12 44 44 H 1.09003 * 107.88928 * 196.92922 * 16 15 14 45 45 H 1.08999 * 108.10262 * 80.53813 * 16 15 14 46 46 H 0.97003 * 120.00271 * 6.80951 * 21 20 18 47 47 H 1.09009 * 109.84199 * 49.34608 * 26 17 16 48 48 H 1.08994 * 109.85440 * 170.26601 * 26 17 16 49 49 H 1.09004 * 108.52527 * 179.64387 * 27 26 17 50 50 H 1.08997 * 108.52275 * 297.16720 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3489 1.1690 -0.0835 5 6 1.3889 2.4703 0.1038 6 1 0.3433 2.2780 0.3442 7 6 1.4915 3.2426 -1.2283 8 6 1.6365 4.7167 -0.7675 9 6 2.4879 4.5605 0.5173 10 7 1.9960 3.3167 1.1472 11 6 3.0847 2.6077 1.8329 12 6 2.1976 -1.2686 0.0006 13 1 3.2715 -1.0858 0.0364 14 6 1.7749 -2.1123 1.1682 15 6 2.9797 -2.8943 1.7467 16 6 3.8872 -3.3927 0.6013 17 7 3.2225 -3.9137 -0.5580 18 6 2.8798 -5.2377 -0.6273 19 1 2.5170 -5.7483 0.2525 20 6 2.9986 -5.9235 -1.8282 21 7 3.8108 -5.4776 -2.7631 22 14 2.0060 -7.4793 -2.1178 23 1 1.1754 -7.7664 -0.9206 24 1 2.9287 -8.6165 -2.3638 25 1 1.1253 -7.2920 -3.2985 26 6 2.9029 -2.9826 -1.6919 27 6 1.8420 -2.0841 -1.2385 28 1 -0.3633 0.1049 1.0223 29 1 -0.3632 0.8328 -0.6021 30 1 -0.3633 -0.9378 -0.4203 31 1 2.3701 2.9262 -1.7905 32 1 0.5860 3.1113 -1.8206 33 1 0.6636 5.1524 -0.5405 34 1 2.1630 5.3102 -1.5150 35 1 2.3313 5.4102 1.1819 36 1 3.5437 4.4656 0.2636 37 1 3.9329 2.5032 1.1563 38 1 3.3896 3.1741 2.7129 39 1 2.7394 1.6199 2.1380 40 1 1.3593 -1.4688 1.9437 41 1 1.0117 -2.8189 0.8425 42 1 3.5521 -2.2408 2.4051 43 1 2.6155 -3.7502 2.3149 44 1 4.5336 -4.1736 1.0020 45 1 4.5206 -2.5636 0.2859 46 1 4.3987 -4.7286 -2.5780 47 1 3.7886 -2.4051 -1.9573 48 1 2.5616 -3.5539 -2.5551 49 1 1.6014 -1.3957 -2.0487 50 1 0.9551 -2.6785 -1.0190 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948242543.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:50:20 Heat of formation + Delta-G solvation = -11.691028 kcal Electronic energy + Delta-G solvation = -27968.435881 eV Core-core repulsion = 24416.905134 eV Total energy + Delta-G solvation = -3551.530747 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.05059 -40.20116 -38.46452 -36.91041 -34.87373 -33.30468 -33.07474 -32.40196 -30.37318 -28.09364 -27.69385 -26.66475 -25.80580 -25.13651 -23.29237 -22.24483 -21.67645 -20.70380 -19.90268 -19.10378 -18.64110 -17.46700 -16.91297 -16.61765 -16.48645 -16.08030 -15.83290 -15.73486 -15.47167 -15.19919 -14.95981 -14.61618 -14.46659 -14.03955 -13.83139 -13.64826 -13.59252 -13.29967 -13.19298 -12.95053 -12.91155 -12.68587 -12.47780 -12.39167 -12.19558 -12.09938 -11.99828 -11.89835 -11.86561 -11.75889 -11.60203 -11.48655 -11.13844 -10.95133 -10.47731 -9.73470 -9.31198 -8.89407 -8.19909 -5.54997 1.41684 1.58339 1.65731 1.82243 1.90116 2.63883 2.96215 3.14871 3.32807 3.46093 3.60307 3.67751 3.73141 3.96980 4.05466 4.10685 4.22373 4.25342 4.30612 4.33633 4.34622 4.42078 4.50429 4.57638 4.58718 4.63751 4.71092 4.76760 4.79259 4.84251 4.91894 4.95551 4.98024 5.00069 5.03207 5.04947 5.06754 5.17860 5.21965 5.24456 5.30199 5.37311 5.59619 5.75385 5.84419 5.94536 6.36445 6.38136 7.07058 7.09341 7.72208 8.26009 8.97199 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.026943 B = 0.003495 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.978064 B = 8009.081092 C = 8253.128703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.604 5.604 3 C 0.497 3.503 4 O -0.581 6.581 5 C 0.052 3.948 6 H 0.130 0.870 7 C -0.130 4.130 8 C -0.116 4.116 9 C 0.032 3.968 10 N -0.510 5.510 11 C 0.017 3.983 12 C 0.157 3.843 13 H 0.072 0.928 14 C -0.102 4.102 15 C -0.129 4.129 16 C 0.154 3.846 17 N -0.604 5.604 18 C -0.351 4.351 19 H 0.043 0.957 20 C -0.068 4.068 21 N -0.937 5.937 22 Si 1.118 2.882 23 H -0.272 1.272 24 H -0.292 1.292 25 H -0.285 1.285 26 C 0.152 3.848 27 C -0.122 4.122 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.050 0.950 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.036 0.964 37 H 0.040 0.960 38 H 0.075 0.925 39 H 0.045 0.955 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.056 0.944 44 H 0.021 0.979 45 H 0.017 0.983 46 H 0.252 0.748 47 H 0.010 0.990 48 H 0.053 0.947 49 H 0.055 0.945 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.738 20.154 6.698 23.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.335 5.335 3 C 0.286 3.714 4 O -0.461 6.461 5 C -0.059 4.059 6 H 0.147 0.853 7 C -0.169 4.169 8 C -0.154 4.154 9 C -0.096 4.096 10 N -0.235 5.235 11 C -0.132 4.132 12 C 0.053 3.947 13 H 0.090 0.910 14 C -0.140 4.140 15 C -0.170 4.170 16 C 0.026 3.974 17 N -0.327 5.327 18 C -0.481 4.481 19 H 0.061 0.939 20 C -0.265 4.265 21 N -0.578 5.578 22 Si 0.943 3.057 23 H -0.197 1.197 24 H -0.219 1.219 25 H -0.211 1.211 26 C 0.027 3.973 27 C -0.161 4.161 28 H 0.094 0.906 29 H 0.113 0.887 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.124 0.876 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.119 0.881 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.039 0.961 45 H 0.035 0.965 46 H 0.062 0.938 47 H 0.028 0.972 48 H 0.072 0.928 49 H 0.073 0.927 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.873 19.092 5.927 22.757 hybrid contribution 1.757 0.349 0.487 1.856 sum -9.116 19.442 6.414 22.411 Atomic orbital electron populations 1.22080 0.77262 1.04556 1.03472 1.48188 1.08469 1.04871 1.71988 1.21702 0.87831 0.86655 0.75245 1.90660 1.16305 1.87666 1.51463 1.22906 1.00509 0.88584 0.93904 0.85262 1.22782 1.03344 0.95894 0.94854 1.22708 1.01627 0.94944 0.96101 1.23291 0.97423 0.92459 0.96384 1.64186 1.29904 1.04749 1.24668 1.22767 0.93784 0.97704 0.98909 1.20079 0.96528 0.82586 0.95493 0.90984 1.21621 0.98207 0.97442 0.96755 1.22581 0.97388 0.99039 0.97975 1.20346 0.92915 0.95483 0.88638 1.44094 1.68474 1.05005 1.15167 1.20055 1.41862 0.87164 0.99039 0.93908 1.27332 0.99193 1.05098 0.94863 1.70834 1.21516 1.27810 1.37590 0.82826 0.74781 0.72063 0.76048 1.19689 1.21937 1.21101 1.20109 0.94775 0.90707 0.91676 1.21088 1.00104 0.97432 0.97520 0.90649 0.88657 0.90427 0.93163 0.87567 0.88260 0.89252 0.88053 0.94583 0.94128 0.90605 0.93620 0.91238 0.92120 0.91345 0.92530 0.96100 0.96460 0.93799 0.97188 0.92843 0.92689 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.22 8.79 127.77 1.12 2.35 16 2 N -0.60 -16.47 2.64 -828.68 -2.19 -18.66 16 3 C 0.50 14.32 4.84 87.66 0.42 14.74 16 4 O -0.58 -21.76 13.00 -3.04 -0.04 -21.80 16 5 C 0.05 1.07 3.26 44.51 0.15 1.22 16 6 H 0.13 2.03 6.00 -2.39 -0.01 2.02 16 7 C -0.13 -2.26 6.46 31.77 0.21 -2.06 16 8 C -0.12 -1.53 7.08 31.98 0.23 -1.31 16 9 C 0.03 0.55 6.73 86.77 0.58 1.14 16 10 N -0.51 -11.03 5.44 -890.91 -4.85 -15.88 16 11 C 0.02 0.43 8.16 127.69 1.04 1.47 16 12 C 0.16 5.40 2.29 43.91 0.10 5.50 16 13 H 0.07 3.00 5.13 -2.39 -0.01 2.98 16 14 C -0.10 -3.33 4.82 30.30 0.15 -3.18 16 15 C -0.13 -4.66 6.40 31.70 0.20 -4.46 16 16 C 0.15 6.93 5.13 87.42 0.45 7.38 16 17 N -0.60 -30.72 2.27 -708.87 -1.61 -32.33 16 18 C -0.35 -19.65 9.42 84.03 0.79 -18.86 16 19 H 0.04 2.42 7.92 -2.91 -0.02 2.40 16 20 C -0.07 -3.83 4.79 84.86 0.41 -3.43 16 21 N -0.94 -57.45 12.45 21.65 0.27 -57.18 16 22 Si 1.12 50.68 29.97 68.60 2.06 52.73 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 24 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 C 0.15 7.27 4.70 83.58 0.39 7.67 16 27 C -0.12 -4.64 4.03 28.36 0.11 -4.53 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.09 1.19 6.73 -2.39 -0.02 1.17 16 30 H 0.08 1.47 7.14 -2.39 -0.02 1.45 16 31 H 0.05 1.16 7.77 -2.39 -0.02 1.14 16 32 H 0.11 1.30 8.14 -2.39 -0.02 1.29 16 33 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.04 0.74 7.61 -2.39 -0.02 0.73 16 37 H 0.04 1.27 5.79 -2.39 -0.01 1.25 16 38 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.04 1.30 6.87 -2.39 -0.02 1.28 16 40 H 0.07 1.96 7.83 -2.38 -0.02 1.94 16 41 H 0.06 2.11 6.83 -2.39 -0.02 2.09 16 42 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 43 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.02 0.99 8.00 -2.39 -0.02 0.97 16 45 H 0.02 0.78 6.89 -2.39 -0.02 0.77 16 46 H 0.25 16.00 7.19 -92.71 -0.67 15.33 16 47 H 0.01 0.49 8.13 -2.38 -0.02 0.48 16 48 H 0.05 2.87 6.34 -2.39 -0.02 2.86 16 49 H 0.05 1.95 8.02 -2.38 -0.02 1.93 16 50 H 0.06 2.46 6.67 -2.39 -0.02 2.44 16 Total: -1.00 -70.66 365.97 1.00 -69.67 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 1.01 Total: 19.81 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: 6.35 Total: 3.64 kcal Atomic # 7 Polarization: -115.67 SS G_CDS: -8.38 Total: -124.05 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.04 Total: -21.80 kcal Atomic # 14 Polarization: 50.68 SS G_CDS: 2.06 Total: 52.73 kcal Total: -70.66 1.00 -69.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948242543.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.975 kcal (2) G-P(sol) polarization free energy of solvation -70.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds