Wall clock time and date at job start Tue Mar 31 2020 09:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46504 * 109.47049 * 2 1 4 4 C 1.34774 * 120.00353 * 83.62153 * 3 2 1 5 5 O 1.21273 * 120.00155 * 184.46348 * 4 3 2 6 6 C 1.50700 * 119.99682 * 4.74805 * 4 3 2 7 7 H 1.09002 * 109.88314 * 355.37041 * 6 4 3 8 8 C 1.54324 * 109.88554 * 234.17120 * 6 4 3 9 9 C 1.55140 * 103.01731 * 218.30906 * 8 6 4 10 10 C 1.54908 * 101.65424 * 35.65631 * 9 8 6 11 11 N 1.47439 * 109.89178 * 116.40321 * 6 4 3 12 12 C 1.46901 * 110.99775 * 356.14420 * 11 6 4 13 13 C 1.53003 * 109.47297 * 168.78241 * 12 11 6 14 14 C 1.52995 * 109.47174 * 288.78362 * 12 11 6 15 15 C 1.46505 * 119.99359 * 263.62554 * 3 2 1 16 16 C 1.53944 * 113.74323 * 36.67565 * 15 3 2 17 17 N 1.47586 * 86.11245 * 222.04656 * 16 15 3 18 18 C 1.36936 * 134.49025 * 204.64094 * 17 16 15 19 19 H 1.08002 * 120.00382 * 179.97438 * 18 17 16 20 20 C 1.38821 * 120.00086 * 0.02562 * 18 17 16 21 21 N 1.31624 * 119.99585 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00134 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.46996 * 59.99732 * 22 20 18 24 24 H 1.48499 * 109.47282 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47226 * 299.99966 * 22 20 18 26 26 C 1.47581 * 91.01584 * 24.64151 * 17 16 15 27 27 H 1.08996 * 109.47177 * 184.77739 * 1 2 3 28 28 H 1.08998 * 109.47116 * 304.78148 * 1 2 3 29 29 H 1.09003 * 109.46511 * 64.77900 * 1 2 3 30 30 H 1.08994 * 109.47154 * 239.99324 * 2 1 3 31 31 H 1.08999 * 109.46834 * 119.99657 * 2 1 3 32 32 H 1.09000 * 110.70248 * 336.69266 * 8 6 4 33 33 H 1.08994 * 110.70631 * 99.93096 * 8 6 4 34 34 H 1.08996 * 110.99412 * 277.56258 * 9 8 6 35 35 H 1.09006 * 110.98857 * 153.74504 * 9 8 6 36 36 H 1.08999 * 110.37590 * 204.09915 * 10 9 8 37 37 H 1.08993 * 110.46807 * 81.80290 * 10 9 8 38 38 H 1.09006 * 109.47237 * 48.78720 * 12 11 6 39 39 H 1.09006 * 109.46586 * 60.00081 * 13 12 11 40 40 H 1.09001 * 109.47280 * 179.97438 * 13 12 11 41 41 H 1.09000 * 109.47268 * 300.00062 * 13 12 11 42 42 H 1.09003 * 109.47153 * 173.55914 * 14 12 11 43 43 H 1.09002 * 109.47210 * 293.55817 * 14 12 11 44 44 H 1.09001 * 109.47267 * 53.56260 * 14 12 11 45 45 H 1.09006 * 112.93892 * 168.41091 * 15 3 2 46 46 H 1.08996 * 113.77199 * 336.34552 * 16 15 3 47 47 H 1.09000 * 113.76686 * 107.75004 * 16 15 3 48 48 H 0.97001 * 119.98959 * 180.02562 * 21 20 18 49 49 H 1.09000 * 113.76658 * 221.05856 * 26 17 16 50 50 H 1.08997 * 113.76735 * 89.65887 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1208 2.0599 1.1599 5 8 2.4474 3.2278 1.1524 6 6 1.8357 1.3656 2.4667 7 1 1.4848 0.3509 2.2786 8 6 0.7718 2.1543 3.2590 9 6 1.2653 2.0314 4.7246 10 6 2.8029 2.0769 4.5420 11 7 3.0568 1.3290 3.2922 12 6 4.2013 1.8932 2.5643 13 6 5.3699 2.0973 3.5307 14 6 4.6220 0.9316 1.4512 15 6 2.3953 2.0248 -1.2610 16 6 1.4991 1.6321 -2.4494 17 7 2.7466 1.5512 -3.2339 18 6 3.0525 1.6610 -4.5641 19 1 4.0762 1.5591 -4.8930 20 6 2.0470 1.9042 -5.4898 21 7 0.7996 2.0288 -5.0889 22 14 2.4643 2.0533 -7.3045 23 1 3.0868 0.7896 -7.7747 24 1 1.2233 2.3109 -8.0782 25 1 3.4145 3.1771 -7.5033 26 6 3.5318 1.3044 -2.0089 27 1 -0.3633 -1.0241 0.0856 28 1 -0.3633 0.5862 0.8440 29 1 -0.3632 0.4379 -0.9298 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 0.7526 3.1979 2.9449 33 1 -0.2113 1.6979 3.1439 34 1 0.9521 1.0844 5.1641 35 1 0.9184 2.8724 5.3252 36 1 3.2994 1.5915 5.3822 37 1 3.1448 3.1072 4.4438 38 1 3.9183 2.8516 2.1289 39 1 5.6529 1.1389 3.9661 40 1 6.2193 2.5155 2.9905 41 1 5.0702 2.7824 4.3237 42 1 5.3943 1.3988 0.8401 43 1 5.0128 0.0144 1.8918 44 1 3.7588 0.6965 0.8285 45 1 2.5481 3.0994 -1.1605 46 1 0.9967 0.6731 -2.3229 47 1 0.8268 2.4264 -2.7739 48 1 0.0970 2.1985 -5.7359 49 1 4.4824 1.8371 -1.9818 50 1 3.6265 0.2492 -1.7530 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950063260.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:37:56 Heat of formation + Delta-G solvation = 49.853386 kcal Electronic energy + Delta-G solvation = -28265.402299 eV Core-core repulsion = 24716.540318 eV Total energy + Delta-G solvation = -3548.861981 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.15001 -38.73373 -37.06661 -35.15034 -34.45480 -32.12686 -30.22149 -29.91153 -29.19416 -27.42452 -26.85367 -24.83264 -23.87471 -23.38183 -22.24593 -21.30674 -20.61844 -19.12256 -18.21838 -17.49344 -16.71513 -16.53823 -15.99767 -15.68468 -14.99977 -14.80354 -14.12141 -13.98097 -13.83274 -13.66965 -13.54750 -12.98243 -12.67382 -12.58548 -12.43069 -12.33010 -12.09841 -11.91367 -11.85053 -11.55987 -11.50495 -11.26416 -11.18299 -11.16228 -11.04183 -10.93339 -10.80661 -10.77182 -10.68806 -10.65536 -10.21627 -10.08100 -9.70383 -9.55178 -8.81785 -8.31013 -7.99407 -6.92623 -5.80559 -3.13231 2.68621 3.23172 3.39009 3.42990 3.43961 3.91269 4.39960 4.44944 4.53748 4.65599 4.95016 5.06222 5.09871 5.13327 5.19362 5.27548 5.34003 5.34623 5.45628 5.52219 5.53870 5.62722 5.65331 5.68942 5.71893 5.77619 5.81155 5.87822 5.92219 5.94752 5.98275 6.03525 6.06211 6.09490 6.18688 6.28174 6.36718 6.42556 6.46596 6.57951 6.79942 6.87581 7.03302 7.17646 7.32715 7.49956 7.74654 7.93822 8.39377 9.00749 9.66763 10.53854 11.36489 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.024242 B = 0.003777 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.728932 B = 7411.813887 C = 7991.842563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.098 3.902 3 N -0.590 5.590 4 C 0.510 3.490 5 O -0.543 6.543 6 C 0.046 3.954 7 H 0.105 0.895 8 C -0.129 4.129 9 C -0.127 4.127 10 C 0.040 3.960 11 N -0.499 5.499 12 C 0.030 3.970 13 C -0.143 4.143 14 C -0.157 4.157 15 C 0.089 3.911 16 C 0.157 3.843 17 N -0.605 5.605 18 C -0.224 4.224 19 H 0.081 0.919 20 C -0.005 4.005 21 N -0.920 5.920 22 Si 0.914 3.086 23 H -0.285 1.285 24 H -0.289 1.289 25 H -0.284 1.284 26 C 0.110 3.890 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.051 0.949 38 H 0.092 0.908 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.075 0.925 45 H 0.113 0.887 46 H 0.036 0.964 47 H 0.075 0.925 48 H 0.255 0.745 49 H 0.045 0.955 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.996 -3.906 19.974 20.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.025 4.025 3 N -0.322 5.322 4 C 0.298 3.702 5 O -0.421 6.421 6 C -0.065 4.065 7 H 0.123 0.877 8 C -0.168 4.168 9 C -0.165 4.165 10 C -0.087 4.087 11 N -0.225 5.225 12 C -0.078 4.078 13 C -0.201 4.201 14 C -0.215 4.215 15 C -0.014 4.014 16 C 0.031 3.969 17 N -0.332 5.332 18 C -0.352 4.352 19 H 0.098 0.902 20 C -0.202 4.202 21 N -0.567 5.567 22 Si 0.744 3.256 23 H -0.211 1.211 24 H -0.215 1.215 25 H -0.210 1.210 26 C -0.017 4.017 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.069 0.931 38 H 0.109 0.891 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.131 0.869 46 H 0.053 0.947 47 H 0.093 0.907 48 H 0.065 0.935 49 H 0.063 0.937 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.233 -3.752 19.691 20.083 hybrid contribution 0.008 0.627 -1.327 1.467 sum 1.241 -3.125 18.364 18.669 Atomic orbital electron populations 1.22323 0.95629 1.02040 1.03209 1.21633 0.94714 0.82820 1.03320 1.48303 1.63139 1.13802 1.06951 1.20811 0.76964 0.86735 0.85729 1.90570 1.47895 1.16570 1.87078 1.22788 0.92288 1.00639 0.90771 0.87699 1.22756 0.97969 1.01307 0.94735 1.22692 0.95207 1.02366 0.96204 1.23086 0.95668 0.97161 0.92796 1.64187 1.02472 1.51938 1.03927 1.22567 0.90588 0.99728 0.94873 1.21895 0.97591 1.01589 0.98989 1.22138 1.02641 0.99011 0.97749 1.24022 0.98322 0.98448 0.80656 1.22688 0.90738 0.99046 0.84464 1.45648 1.03368 1.82934 1.01246 1.18944 0.93508 1.42568 0.80135 0.90152 1.24788 0.95261 1.02039 0.98127 1.69807 0.99058 1.54730 1.33122 0.86178 0.76989 0.77982 0.84469 1.21143 1.21518 1.21012 1.22966 0.95137 0.96852 0.86764 0.91688 0.92819 0.90997 0.89278 0.90515 0.90212 0.90340 0.90561 0.90683 0.90109 0.93073 0.89115 0.92369 0.92307 0.92830 0.92461 0.92620 0.90684 0.86913 0.94686 0.90707 0.93528 0.93679 0.94747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 9.81 37.16 0.36 -1.73 16 2 C 0.10 1.28 4.05 -4.04 -0.02 1.27 16 3 N -0.59 -9.30 1.45 -167.91 -0.24 -9.54 16 4 C 0.51 7.97 3.76 -10.99 -0.04 7.93 16 5 O -0.54 -10.28 13.33 5.56 0.07 -10.20 16 6 C 0.05 0.57 2.91 -67.88 -0.20 0.38 16 7 H 0.11 1.18 5.29 -51.93 -0.27 0.91 16 8 C -0.13 -1.41 6.43 -24.91 -0.16 -1.57 16 9 C -0.13 -1.13 7.08 -24.59 -0.17 -1.30 16 10 C 0.04 0.42 5.31 -2.30 -0.01 0.41 16 11 N -0.50 -6.07 5.03 -216.81 -1.09 -7.16 16 12 C 0.03 0.40 2.11 -67.71 -0.14 0.26 16 13 C -0.14 -1.59 8.83 37.16 0.33 -1.26 16 14 C -0.16 -2.14 8.93 37.16 0.33 -1.81 16 15 C 0.09 1.75 4.41 -70.15 -0.31 1.44 16 16 C 0.16 3.60 6.57 -2.97 -0.02 3.58 16 17 N -0.61 -15.41 3.70 -178.11 -0.66 -16.07 16 18 C -0.22 -6.26 10.70 -15.06 -0.16 -6.42 16 19 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 20 C -0.01 -0.15 5.50 -17.42 -0.10 -0.25 16 21 N -0.92 -27.00 11.38 55.49 0.63 -26.37 16 22 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 C 0.11 2.26 8.44 -2.98 -0.03 2.24 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.60 7.77 -51.93 -0.40 0.20 16 29 H 0.07 1.04 6.59 -51.93 -0.34 0.70 16 30 H 0.09 1.28 6.12 -51.93 -0.32 0.96 16 31 H 0.08 0.85 5.96 -51.93 -0.31 0.54 16 32 H 0.08 1.03 7.42 -51.93 -0.39 0.65 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.57 6.94 -51.93 -0.36 0.21 16 38 H 0.09 1.50 4.84 -51.94 -0.25 1.25 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.05 0.55 6.41 -51.93 -0.33 0.22 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 1.08 3.62 -51.93 -0.19 0.90 16 45 H 0.11 2.46 7.22 -51.93 -0.38 2.08 16 46 H 0.04 0.79 5.28 -51.93 -0.27 0.51 16 47 H 0.07 1.96 7.15 -51.93 -0.37 1.59 16 48 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 49 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.04 0.67 7.07 -51.93 -0.37 0.30 16 LS Contribution 365.84 15.07 5.51 5.51 Total: -1.00 -31.12 365.84 -9.45 -40.58 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -8.33 Total: 3.07 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -0.33 Total: 3.15 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: -1.36 Total: -59.13 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.07 Total: -10.20 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.12 -9.45 -40.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950063260.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.430 kcal (2) G-P(sol) polarization free energy of solvation -31.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds