Wall clock time and date at job start Tue Mar 31 2020 09:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46504 * 109.47049 * 2 1 4 4 C 1.34774 * 120.00353 * 83.62153 * 3 2 1 5 5 O 1.21273 * 120.00155 * 184.46348 * 4 3 2 6 6 C 1.50700 * 119.99682 * 4.74805 * 4 3 2 7 7 H 1.09002 * 109.88314 * 355.37041 * 6 4 3 8 8 C 1.54324 * 109.88554 * 234.17120 * 6 4 3 9 9 C 1.55140 * 103.01731 * 218.30906 * 8 6 4 10 10 C 1.54908 * 101.65424 * 35.65631 * 9 8 6 11 11 N 1.47439 * 109.89178 * 116.40321 * 6 4 3 12 12 C 1.46901 * 110.99775 * 356.14420 * 11 6 4 13 13 C 1.53003 * 109.47297 * 168.78241 * 12 11 6 14 14 C 1.52995 * 109.47174 * 288.78362 * 12 11 6 15 15 C 1.46505 * 119.99359 * 263.62554 * 3 2 1 16 16 C 1.53944 * 113.74323 * 36.67565 * 15 3 2 17 17 N 1.47586 * 86.11245 * 222.04656 * 16 15 3 18 18 C 1.36936 * 134.49025 * 204.64094 * 17 16 15 19 19 H 1.08002 * 120.00382 * 179.97438 * 18 17 16 20 20 C 1.38821 * 120.00086 * 0.02562 * 18 17 16 21 21 N 1.31624 * 119.99585 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00134 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.46996 * 59.99732 * 22 20 18 24 24 H 1.48499 * 109.47282 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47226 * 299.99966 * 22 20 18 26 26 C 1.47581 * 91.01584 * 24.64151 * 17 16 15 27 27 H 1.08996 * 109.47177 * 184.77739 * 1 2 3 28 28 H 1.08998 * 109.47116 * 304.78148 * 1 2 3 29 29 H 1.09003 * 109.46511 * 64.77900 * 1 2 3 30 30 H 1.08994 * 109.47154 * 239.99324 * 2 1 3 31 31 H 1.08999 * 109.46834 * 119.99657 * 2 1 3 32 32 H 1.09000 * 110.70248 * 336.69266 * 8 6 4 33 33 H 1.08994 * 110.70631 * 99.93096 * 8 6 4 34 34 H 1.08996 * 110.99412 * 277.56258 * 9 8 6 35 35 H 1.09006 * 110.98857 * 153.74504 * 9 8 6 36 36 H 1.08999 * 110.37590 * 204.09915 * 10 9 8 37 37 H 1.08993 * 110.46807 * 81.80290 * 10 9 8 38 38 H 1.09006 * 109.47237 * 48.78720 * 12 11 6 39 39 H 1.09006 * 109.46586 * 60.00081 * 13 12 11 40 40 H 1.09001 * 109.47280 * 179.97438 * 13 12 11 41 41 H 1.09000 * 109.47268 * 300.00062 * 13 12 11 42 42 H 1.09003 * 109.47153 * 173.55914 * 14 12 11 43 43 H 1.09002 * 109.47210 * 293.55817 * 14 12 11 44 44 H 1.09001 * 109.47267 * 53.56260 * 14 12 11 45 45 H 1.09006 * 112.93892 * 168.41091 * 15 3 2 46 46 H 1.08996 * 113.77199 * 336.34552 * 16 15 3 47 47 H 1.09000 * 113.76686 * 107.75004 * 16 15 3 48 48 H 0.97001 * 119.98959 * 180.02562 * 21 20 18 49 49 H 1.09000 * 113.76658 * 221.05856 * 26 17 16 50 50 H 1.08997 * 113.76735 * 89.65887 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1208 2.0599 1.1599 5 8 2.4474 3.2278 1.1524 6 6 1.8357 1.3656 2.4667 7 1 1.4848 0.3509 2.2786 8 6 0.7718 2.1543 3.2590 9 6 1.2653 2.0314 4.7246 10 6 2.8029 2.0769 4.5420 11 7 3.0568 1.3290 3.2922 12 6 4.2013 1.8932 2.5643 13 6 5.3699 2.0973 3.5307 14 6 4.6220 0.9316 1.4512 15 6 2.3953 2.0248 -1.2610 16 6 1.4991 1.6321 -2.4494 17 7 2.7466 1.5512 -3.2339 18 6 3.0525 1.6610 -4.5641 19 1 4.0762 1.5591 -4.8930 20 6 2.0470 1.9042 -5.4898 21 7 0.7996 2.0288 -5.0889 22 14 2.4643 2.0533 -7.3045 23 1 3.0868 0.7896 -7.7747 24 1 1.2233 2.3109 -8.0782 25 1 3.4145 3.1771 -7.5033 26 6 3.5318 1.3044 -2.0089 27 1 -0.3633 -1.0241 0.0856 28 1 -0.3633 0.5862 0.8440 29 1 -0.3632 0.4379 -0.9298 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 0.7526 3.1979 2.9449 33 1 -0.2113 1.6979 3.1439 34 1 0.9521 1.0844 5.1641 35 1 0.9184 2.8724 5.3252 36 1 3.2994 1.5915 5.3822 37 1 3.1448 3.1072 4.4438 38 1 3.9183 2.8516 2.1289 39 1 5.6529 1.1389 3.9661 40 1 6.2193 2.5155 2.9905 41 1 5.0702 2.7824 4.3237 42 1 5.3943 1.3988 0.8401 43 1 5.0128 0.0144 1.8918 44 1 3.7588 0.6965 0.8285 45 1 2.5481 3.0994 -1.1605 46 1 0.9967 0.6731 -2.3229 47 1 0.8268 2.4264 -2.7739 48 1 0.0970 2.1985 -5.7359 49 1 4.4824 1.8371 -1.9818 50 1 3.6265 0.2492 -1.7530 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950063260.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:37:55 Heat of formation + Delta-G solvation = 30.282399 kcal Electronic energy + Delta-G solvation = -28266.250961 eV Core-core repulsion = 24716.540318 eV Total energy + Delta-G solvation = -3549.710642 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.33296 -40.17514 -38.40507 -36.55174 -35.39932 -34.14763 -31.43684 -30.97506 -30.11270 -29.26366 -27.83579 -26.62711 -25.48914 -24.50550 -23.51581 -22.31706 -21.67550 -20.61954 -19.51697 -18.97821 -18.40788 -17.68988 -17.14747 -16.99542 -16.70662 -16.06073 -15.72404 -15.17120 -15.02003 -14.90465 -14.58801 -14.32751 -13.97977 -13.94753 -13.62423 -13.43967 -13.25913 -13.20920 -13.06886 -12.96362 -12.82188 -12.79673 -12.62419 -12.39399 -12.17432 -12.14737 -12.06757 -12.02247 -11.96143 -11.75237 -11.72077 -11.60358 -11.45792 -10.93865 -10.87822 -9.57721 -9.17542 -8.96634 -7.94112 -5.28418 1.44430 1.46767 1.48072 1.54171 1.92897 2.47273 2.94729 3.24394 3.35387 3.43205 3.67569 3.74057 3.81433 4.00642 4.13329 4.15730 4.19334 4.25406 4.34353 4.40746 4.43503 4.52306 4.55922 4.58444 4.71180 4.76573 4.79024 4.82561 4.88209 4.89506 4.93170 4.93529 4.97484 5.05273 5.08991 5.10847 5.16956 5.25624 5.27085 5.33607 5.40014 5.42358 5.45531 5.70436 5.87978 5.92978 6.03762 6.45615 6.87521 7.12852 7.55813 8.49469 9.22516 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.024242 B = 0.003777 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.728932 B = 7411.813887 C = 7991.842563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.096 3.904 3 N -0.589 5.589 4 C 0.509 3.491 5 O -0.580 6.580 6 C 0.050 3.950 7 H 0.126 0.874 8 C -0.131 4.131 9 C -0.116 4.116 10 C 0.035 3.965 11 N -0.494 5.494 12 C 0.030 3.970 13 C -0.137 4.137 14 C -0.155 4.155 15 C 0.116 3.884 16 C 0.164 3.836 17 N -0.636 5.636 18 C -0.239 4.239 19 H 0.085 0.915 20 C -0.062 4.062 21 N -0.951 5.951 22 Si 0.981 3.019 23 H -0.274 1.274 24 H -0.293 1.293 25 H -0.278 1.278 26 C 0.119 3.881 27 H 0.093 0.907 28 H 0.064 0.936 29 H 0.039 0.961 30 H 0.077 0.923 31 H 0.109 0.891 32 H 0.052 0.948 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.037 0.963 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.045 0.955 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.085 0.915 46 H 0.044 0.956 47 H 0.034 0.966 48 H 0.250 0.750 49 H 0.046 0.954 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.283 -5.857 22.137 22.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.026 4.026 3 N -0.320 5.320 4 C 0.299 3.701 5 O -0.460 6.460 6 C -0.060 4.060 7 H 0.143 0.857 8 C -0.170 4.170 9 C -0.154 4.154 10 C -0.092 4.092 11 N -0.220 5.220 12 C -0.078 4.078 13 C -0.195 4.195 14 C -0.213 4.213 15 C 0.011 3.989 16 C 0.038 3.962 17 N -0.363 5.363 18 C -0.367 4.367 19 H 0.102 0.898 20 C -0.255 4.255 21 N -0.600 5.600 22 Si 0.809 3.191 23 H -0.200 1.200 24 H -0.219 1.219 25 H -0.204 1.204 26 C -0.007 4.007 27 H 0.112 0.888 28 H 0.083 0.917 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.127 0.873 32 H 0.071 0.929 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.106 0.894 36 H 0.119 0.881 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.064 0.936 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.104 0.896 46 H 0.061 0.939 47 H 0.052 0.948 48 H 0.059 0.941 49 H 0.064 0.936 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.534 -5.730 21.899 22.688 hybrid contribution -0.054 1.258 -1.918 2.295 sum 1.480 -4.472 19.981 20.529 Atomic orbital electron populations 1.22280 0.94653 1.03774 1.01973 1.21851 0.95475 0.81019 1.04238 1.48251 1.63352 1.14855 1.05549 1.21480 0.75792 0.86284 0.86547 1.90570 1.49332 1.18541 1.87606 1.22932 0.93092 1.01260 0.88753 0.85691 1.22797 0.98642 0.99616 0.95920 1.22704 0.93738 1.04073 0.94866 1.23228 0.97136 0.96447 0.92412 1.64308 1.01824 1.51755 1.04116 1.22448 0.91958 0.97928 0.95440 1.21842 0.96567 1.02416 0.98637 1.22101 1.01909 0.99601 0.97679 1.23215 0.96673 0.97115 0.81897 1.22533 0.90005 0.98043 0.85638 1.45967 1.05195 1.83435 1.01693 1.19344 0.93856 1.41898 0.81645 0.89772 1.25635 0.95198 1.02317 1.02377 1.70003 0.99840 1.56034 1.34074 0.85123 0.76531 0.78267 0.79211 1.20019 1.21880 1.20425 1.23021 0.94927 0.97997 0.84719 0.88824 0.91695 0.94169 0.90469 0.87343 0.92911 0.88245 0.88459 0.89383 0.88104 0.94487 0.92639 0.91138 0.92471 0.92094 0.93616 0.91065 0.91642 0.89641 0.93855 0.94764 0.94139 0.93618 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.76 9.81 71.98 0.71 -3.05 16 2 C 0.10 2.33 4.05 86.38 0.35 2.68 16 3 N -0.59 -18.44 1.45 -803.53 -1.16 -19.61 16 4 C 0.51 15.79 3.76 87.66 0.33 16.12 16 5 O -0.58 -22.74 13.33 -3.01 -0.04 -22.78 16 6 C 0.05 1.14 2.91 44.51 0.13 1.27 16 7 H 0.13 2.33 5.29 -2.39 -0.01 2.32 16 8 C -0.13 -2.57 6.43 31.78 0.20 -2.37 16 9 C -0.12 -1.68 7.08 31.98 0.23 -1.45 16 10 C 0.03 0.63 5.31 86.77 0.46 1.09 16 11 N -0.49 -10.83 5.03 -839.84 -4.22 -15.05 16 12 C 0.03 0.78 2.11 44.91 0.09 0.87 16 13 C -0.14 -2.82 8.83 71.98 0.64 -2.19 16 14 C -0.15 -4.02 8.93 71.98 0.64 -3.38 16 15 C 0.12 4.72 4.41 46.75 0.21 4.93 16 16 C 0.16 7.86 6.57 86.48 0.57 8.42 16 17 N -0.64 -33.21 3.70 -717.41 -2.65 -35.87 16 18 C -0.24 -13.63 10.70 84.04 0.90 -12.73 16 19 H 0.08 4.58 7.83 -2.91 -0.02 4.55 16 20 C -0.06 -3.55 5.50 84.86 0.47 -3.09 16 21 N -0.95 -57.61 11.38 21.66 0.25 -57.37 16 22 Si 0.98 45.98 29.55 68.60 2.03 48.01 16 23 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 25 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 26 C 0.12 4.97 8.44 86.48 0.73 5.70 16 27 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.06 1.30 7.77 -2.39 -0.02 1.28 16 29 H 0.04 1.16 6.59 -2.39 -0.02 1.14 16 30 H 0.08 2.10 6.12 -2.39 -0.01 2.09 16 31 H 0.11 2.00 5.96 -2.39 -0.01 1.99 16 32 H 0.05 1.34 7.42 -2.39 -0.02 1.32 16 33 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.04 0.78 6.94 -2.39 -0.02 0.76 16 38 H 0.06 1.88 4.84 -2.68 -0.01 1.86 16 39 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.06 1.15 6.41 -2.39 -0.02 1.14 16 42 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.06 1.80 3.62 -2.39 -0.01 1.79 16 45 H 0.09 3.96 7.22 -2.38 -0.02 3.94 16 46 H 0.04 2.01 5.28 -2.39 -0.01 1.99 16 47 H 0.03 1.90 7.15 -2.39 -0.02 1.89 16 48 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 49 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 50 H 0.06 2.17 7.07 -2.39 -0.02 2.15 16 Total: -1.00 -70.35 365.84 1.77 -68.58 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.92 Total: 21.24 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 6.65 Total: 12.84 kcal Atomic # 7 Polarization: -120.10 SS G_CDS: -7.79 Total: -127.89 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.04 Total: -22.78 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -70.35 1.77 -68.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950063260.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.863 kcal (2) G-P(sol) polarization free energy of solvation -70.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds