Wall clock time and date at job start Tue Mar 31 2020 10:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 111.00003 * 2 1 4 4 C 1.46899 * 110.99707 * 123.94944 * 2 1 3 5 5 H 1.08998 * 109.47208 * 55.00421 * 4 2 1 6 6 C 1.52995 * 109.47410 * 295.00145 * 4 2 1 7 7 C 1.53004 * 109.47549 * 180.02562 * 6 4 2 8 8 C 1.53001 * 109.46894 * 59.99570 * 7 6 4 9 9 C 1.52995 * 109.47374 * 300.00537 * 8 7 6 10 10 H 1.08998 * 109.47160 * 299.99714 * 9 8 7 11 11 C 1.50703 * 109.47035 * 180.02562 * 9 8 7 12 12 O 1.21288 * 119.99595 * 333.44131 * 11 9 8 13 13 N 1.34770 * 120.00060 * 153.44977 * 11 9 8 14 14 C 1.46965 * 120.59616 * 4.62662 * 13 11 9 15 15 C 1.53813 * 108.40197 * 124.76267 * 14 13 11 16 16 N 1.46957 * 108.57705 * 49.63666 * 15 14 13 17 17 C 1.36935 * 120.59537 * 124.62953 * 16 15 14 18 18 H 1.08001 * 120.00224 * 214.04175 * 17 16 15 19 19 C 1.38818 * 119.99997 * 34.04042 * 17 16 15 20 20 N 1.31618 * 119.99795 * 15.84753 * 19 17 16 21 21 Si 1.86792 * 120.00021 * 195.85046 * 19 17 16 22 22 H 1.48501 * 109.47408 * 89.99884 * 21 19 17 23 23 H 1.48506 * 109.47001 * 209.99757 * 21 19 17 24 24 H 1.48494 * 109.47502 * 329.99736 * 21 19 17 25 25 C 1.46969 * 118.81348 * 304.64917 * 16 15 14 26 26 C 1.46967 * 120.59328 * 184.91050 * 13 11 9 27 27 C 1.52995 * 109.47399 * 59.99908 * 9 8 7 28 28 H 1.09002 * 109.47209 * 296.05063 * 1 2 3 29 29 H 1.08999 * 109.46904 * 56.04711 * 1 2 3 30 30 H 1.09003 * 109.47287 * 176.05042 * 1 2 3 31 31 H 1.08999 * 109.46780 * 183.95054 * 3 2 1 32 32 H 1.09001 * 109.46538 * 303.95086 * 3 2 1 33 33 H 1.09003 * 109.47204 * 63.95036 * 3 2 1 34 34 H 1.09008 * 109.47566 * 299.99932 * 6 4 2 35 35 H 1.09004 * 109.47481 * 60.00084 * 6 4 2 36 36 H 1.08998 * 109.46858 * 299.99708 * 7 6 4 37 37 H 1.08995 * 109.47326 * 179.97438 * 7 6 4 38 38 H 1.08999 * 109.46713 * 180.02562 * 8 7 6 39 39 H 1.09008 * 109.46727 * 60.00523 * 8 7 6 40 40 H 1.09007 * 109.60940 * 244.54732 * 14 13 11 41 41 H 1.08999 * 109.60733 * 5.05483 * 14 13 11 42 42 H 1.09001 * 109.73591 * 289.84913 * 15 14 13 43 43 H 1.08997 * 109.67537 * 169.39095 * 15 14 13 44 44 H 0.96994 * 120.00001 * 180.02562 * 20 19 17 45 45 H 1.08996 * 109.61169 * 295.47975 * 25 16 15 46 46 H 1.09003 * 109.60925 * 174.97401 * 25 16 15 47 47 H 1.08996 * 109.61106 * 354.94197 * 26 13 11 48 48 H 1.08997 * 109.60969 * 115.28213 * 26 13 11 49 49 H 1.08995 * 109.47176 * 180.02562 * 27 9 8 50 50 H 1.08998 * 109.47123 * 59.99783 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1377 5 1 1.5753 -1.7716 1.1241 6 6 1.6090 -0.0694 2.4439 7 6 2.1577 -0.8668 3.6289 8 6 3.6821 -0.9489 3.5261 9 6 4.0685 -1.6454 2.2199 10 1 3.6488 -2.6512 2.2065 11 6 5.5699 -1.7267 2.1190 12 8 6.2611 -0.9084 2.6880 13 7 6.1445 -2.7087 1.3966 14 6 5.3210 -3.6459 0.6199 15 6 5.7970 -3.6138 -0.8424 16 7 7.2580 -3.7703 -0.8627 17 6 7.8419 -4.7686 -1.5959 18 1 8.7434 -5.2443 -1.2389 19 6 7.2751 -5.1691 -2.7982 20 7 6.3795 -4.4073 -3.3895 21 14 7.7835 -6.7893 -3.5765 22 1 6.8983 -7.8748 -3.0833 23 1 7.6660 -6.6873 -5.0534 24 1 9.1904 -7.0938 -3.2118 25 6 8.0814 -2.8365 -0.0815 26 6 7.6057 -2.8652 1.3762 27 6 3.5197 -0.8480 1.0350 28 1 -0.3634 0.4513 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3634 -1.0252 -0.0708 31 1 3.0828 1.3432 -0.0708 32 1 1.5898 1.9162 -0.8525 33 1 1.7043 1.8724 0.9233 34 1 2.0291 0.9364 2.4576 35 1 0.5230 -0.0105 2.5170 36 1 1.7380 -1.8726 3.6155 37 1 1.8828 -0.3703 4.5594 38 1 4.0730 -1.5173 4.3700 39 1 4.1018 0.0571 3.5395 40 1 5.4343 -4.6526 1.0224 41 1 4.2750 -3.3438 0.6725 42 1 5.5247 -2.6614 -1.2973 43 1 5.3338 -4.4298 -1.3970 44 1 5.9831 -4.6873 -4.2294 45 1 7.9718 -1.8289 -0.4823 46 1 9.1268 -3.1410 -0.1313 47 1 8.0690 -2.0475 1.9283 48 1 7.8781 -3.8162 1.8340 49 1 3.7946 -1.3445 0.1044 50 1 3.9394 0.1578 1.0484 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957325844.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:01:14 Heat of formation + Delta-G solvation = -11.544342 kcal Electronic energy + Delta-G solvation = -27667.917842 eV Core-core repulsion = 24116.393457 eV Total energy + Delta-G solvation = -3551.524386 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.38876 -38.83771 -36.81061 -35.47595 -33.82450 -31.79556 -30.80277 -30.03288 -29.64496 -27.73800 -26.91225 -24.61959 -23.89420 -23.14235 -22.62064 -21.53080 -20.16299 -19.52643 -18.41038 -17.16717 -16.16705 -16.04777 -15.42261 -15.12089 -14.89471 -14.72699 -14.69447 -14.31963 -14.19404 -13.72053 -13.56492 -13.30169 -13.27503 -13.08874 -12.50149 -12.44475 -12.28407 -12.05268 -11.87968 -11.68270 -11.59579 -11.35966 -11.22007 -11.04892 -10.83567 -10.74830 -10.63682 -10.56320 -10.47710 -10.37410 -10.21536 -10.03840 -9.80062 -9.18763 -8.56726 -8.32762 -8.19882 -6.62445 -5.85027 -3.35135 2.99137 3.34192 3.41359 3.42519 3.48130 3.87210 4.44293 4.54730 4.58933 4.83265 4.96365 5.02630 5.06433 5.17537 5.25271 5.27050 5.31481 5.34296 5.36744 5.41625 5.46168 5.51286 5.61123 5.74773 5.80026 5.82144 5.86624 5.88548 5.93064 5.95975 6.01042 6.05448 6.12196 6.13743 6.22956 6.32511 6.36204 6.38506 6.47952 6.82954 6.95012 6.95500 6.97914 7.22830 7.42742 7.75387 7.96550 8.40766 8.61382 9.13609 9.74503 10.35717 11.22339 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.015749 B = 0.004032 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.493747 B = 6943.400588 C = 8079.771896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.538 5.538 3 C 0.016 3.984 4 C 0.088 3.912 5 H 0.085 0.915 6 C -0.154 4.154 7 C -0.112 4.112 8 C -0.100 4.100 9 C -0.103 4.103 10 H 0.091 0.909 11 C 0.516 3.484 12 O -0.561 6.561 13 N -0.595 5.595 14 C 0.078 3.922 15 C 0.163 3.837 16 N -0.589 5.589 17 C -0.262 4.262 18 H 0.064 0.936 19 C 0.011 3.989 20 N -0.897 5.897 21 Si 0.903 3.097 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.278 1.278 25 C 0.132 3.868 26 C 0.095 3.905 27 C -0.101 4.101 28 H 0.026 0.974 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.028 0.972 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.026 0.974 43 H 0.089 0.911 44 H 0.256 0.744 45 H 0.023 0.977 46 H 0.065 0.935 47 H 0.080 0.920 48 H 0.061 0.939 49 H 0.083 0.917 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.998 7.164 11.019 17.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.260 5.260 3 C -0.132 4.132 4 C -0.020 4.020 5 H 0.103 0.897 6 C -0.193 4.193 7 C -0.150 4.150 8 C -0.138 4.138 9 C -0.124 4.124 10 H 0.109 0.891 11 C 0.303 3.697 12 O -0.440 6.440 13 N -0.327 5.327 14 C -0.046 4.046 15 C 0.037 3.963 16 N -0.312 5.312 17 C -0.392 4.392 18 H 0.082 0.918 19 C -0.189 4.189 20 N -0.540 5.540 21 Si 0.732 3.268 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.203 1.203 25 C 0.005 3.995 26 C -0.030 4.030 27 C -0.139 4.139 28 H 0.045 0.955 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.047 0.953 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.045 0.955 43 H 0.107 0.893 44 H 0.066 0.934 45 H 0.041 0.959 46 H 0.084 0.916 47 H 0.099 0.901 48 H 0.079 0.921 49 H 0.101 0.899 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.538 7.323 10.658 17.331 hybrid contribution -0.129 -0.521 0.134 0.553 sum -11.667 6.802 10.792 17.288 Atomic orbital electron populations 1.22399 0.87629 1.02258 1.00288 1.62190 1.07610 1.14019 1.42186 1.22490 1.01510 0.88947 1.00226 1.21720 0.95165 0.97671 0.87467 0.89731 1.22251 1.00539 1.00426 0.96108 1.21460 0.95554 1.00334 0.97701 1.21376 0.95037 1.01716 0.95684 1.21271 0.92618 1.01382 0.97169 0.89109 1.20504 0.90119 0.80703 0.78333 1.90619 1.64946 1.40441 1.47998 1.48067 1.07748 1.30486 1.46364 1.22816 0.93811 0.92092 0.95924 1.21139 0.84864 1.00994 0.89340 1.43904 1.00490 1.32651 1.54160 1.19143 1.10527 1.10197 0.99322 0.91807 1.25210 0.99505 0.98705 0.95499 1.70019 1.31062 1.35631 1.17294 0.86298 0.78477 0.83706 0.78296 1.21289 1.21679 1.20321 1.21298 0.95368 0.93647 0.89141 1.22196 0.79698 1.01095 0.99965 1.21546 0.93853 1.00949 0.97595 0.95529 0.91534 0.91372 0.90825 0.91626 0.95333 0.91517 0.91966 0.91861 0.91856 0.91782 0.90879 0.91984 0.90730 0.95545 0.89253 0.93445 0.95908 0.91630 0.90146 0.92108 0.89880 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.31 60.06 0.56 0.76 16 2 N -0.54 -6.07 5.01 -243.18 -1.22 -7.29 16 3 C 0.02 0.17 8.82 60.07 0.53 0.70 16 4 C 0.09 0.97 2.23 -67.71 -0.15 0.82 16 5 H 0.08 0.91 8.13 -51.93 -0.42 0.49 16 6 C -0.15 -1.47 4.51 -26.73 -0.12 -1.59 16 7 C -0.11 -1.05 5.92 -26.73 -0.16 -1.21 16 8 C -0.10 -1.19 4.75 -26.73 -0.13 -1.32 16 9 C -0.10 -1.37 1.66 -91.78 -0.15 -1.52 16 10 H 0.09 1.11 6.60 -51.93 -0.34 0.77 16 11 C 0.52 8.97 6.78 -10.99 -0.07 8.89 16 12 O -0.56 -11.30 15.53 5.55 0.09 -11.22 16 13 N -0.60 -10.83 2.94 -172.21 -0.51 -11.33 16 14 C 0.08 1.39 6.21 -3.37 -0.02 1.36 16 15 C 0.16 3.69 5.49 -3.37 -0.02 3.67 16 16 N -0.59 -14.42 2.93 -171.77 -0.50 -14.93 16 17 C -0.26 -7.00 9.52 -15.06 -0.14 -7.15 16 18 H 0.06 1.68 7.88 -52.49 -0.41 1.27 16 19 C 0.01 0.29 4.90 -17.43 -0.09 0.21 16 20 N -0.90 -25.37 11.55 55.49 0.64 -24.72 16 21 Si 0.90 21.08 29.58 -169.99 -5.03 16.06 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 C 0.13 2.83 6.67 -3.60 -0.02 2.81 16 26 C 0.09 1.78 6.60 -3.60 -0.02 1.75 16 27 C -0.10 -1.33 4.05 -26.73 -0.11 -1.44 16 28 H 0.03 0.22 6.44 -51.93 -0.33 -0.12 16 29 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.85 6.32 -51.93 -0.33 0.52 16 32 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 33 H 0.03 0.27 6.28 -51.93 -0.33 -0.05 16 34 H 0.07 0.67 6.39 -51.92 -0.33 0.34 16 35 H 0.06 0.54 6.52 -51.93 -0.34 0.20 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.97 7.86 -51.92 -0.41 0.56 16 40 H 0.06 1.10 8.14 -51.92 -0.42 0.67 16 41 H 0.07 1.13 4.91 -51.93 -0.25 0.87 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 2.21 6.40 -51.93 -0.33 1.88 16 44 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.07 1.34 7.93 -51.93 -0.41 0.93 16 47 H 0.08 1.49 6.99 -51.93 -0.36 1.13 16 48 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.08 1.26 7.32 -51.93 -0.38 0.88 16 50 H 0.07 0.98 6.42 -51.93 -0.33 0.65 16 LS Contribution 368.34 15.07 5.55 5.55 Total: -1.00 -30.30 368.34 -9.78 -40.08 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -8.68 Total: 1.06 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -0.12 Total: 6.74 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: -1.59 Total: -58.28 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.30 -9.78 -40.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957325844.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.537 kcal (2) G-P(sol) polarization free energy of solvation -30.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds