Wall clock time and date at job start Tue Mar 31 2020 10:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 111.00003 * 2 1 4 4 C 1.46899 * 110.99707 * 123.94944 * 2 1 3 5 5 H 1.08998 * 109.47208 * 55.00421 * 4 2 1 6 6 C 1.52995 * 109.47410 * 295.00145 * 4 2 1 7 7 C 1.53004 * 109.47549 * 180.02562 * 6 4 2 8 8 C 1.53001 * 109.46894 * 59.99570 * 7 6 4 9 9 C 1.52995 * 109.47374 * 300.00537 * 8 7 6 10 10 H 1.08998 * 109.47160 * 299.99714 * 9 8 7 11 11 C 1.50703 * 109.47035 * 180.02562 * 9 8 7 12 12 O 1.21288 * 119.99595 * 333.44131 * 11 9 8 13 13 N 1.34770 * 120.00060 * 153.44977 * 11 9 8 14 14 C 1.46965 * 120.59616 * 4.62662 * 13 11 9 15 15 C 1.53813 * 108.40197 * 124.76267 * 14 13 11 16 16 N 1.46957 * 108.57705 * 49.63666 * 15 14 13 17 17 C 1.36935 * 120.59537 * 124.62953 * 16 15 14 18 18 H 1.08001 * 120.00224 * 214.04175 * 17 16 15 19 19 C 1.38818 * 119.99997 * 34.04042 * 17 16 15 20 20 N 1.31618 * 119.99795 * 15.84753 * 19 17 16 21 21 Si 1.86792 * 120.00021 * 195.85046 * 19 17 16 22 22 H 1.48501 * 109.47408 * 89.99884 * 21 19 17 23 23 H 1.48506 * 109.47001 * 209.99757 * 21 19 17 24 24 H 1.48494 * 109.47502 * 329.99736 * 21 19 17 25 25 C 1.46969 * 118.81348 * 304.64917 * 16 15 14 26 26 C 1.46967 * 120.59328 * 184.91050 * 13 11 9 27 27 C 1.52995 * 109.47399 * 59.99908 * 9 8 7 28 28 H 1.09002 * 109.47209 * 296.05063 * 1 2 3 29 29 H 1.08999 * 109.46904 * 56.04711 * 1 2 3 30 30 H 1.09003 * 109.47287 * 176.05042 * 1 2 3 31 31 H 1.08999 * 109.46780 * 183.95054 * 3 2 1 32 32 H 1.09001 * 109.46538 * 303.95086 * 3 2 1 33 33 H 1.09003 * 109.47204 * 63.95036 * 3 2 1 34 34 H 1.09008 * 109.47566 * 299.99932 * 6 4 2 35 35 H 1.09004 * 109.47481 * 60.00084 * 6 4 2 36 36 H 1.08998 * 109.46858 * 299.99708 * 7 6 4 37 37 H 1.08995 * 109.47326 * 179.97438 * 7 6 4 38 38 H 1.08999 * 109.46713 * 180.02562 * 8 7 6 39 39 H 1.09008 * 109.46727 * 60.00523 * 8 7 6 40 40 H 1.09007 * 109.60940 * 244.54732 * 14 13 11 41 41 H 1.08999 * 109.60733 * 5.05483 * 14 13 11 42 42 H 1.09001 * 109.73591 * 289.84913 * 15 14 13 43 43 H 1.08997 * 109.67537 * 169.39095 * 15 14 13 44 44 H 0.96994 * 120.00001 * 180.02562 * 20 19 17 45 45 H 1.08996 * 109.61169 * 295.47975 * 25 16 15 46 46 H 1.09003 * 109.60925 * 174.97401 * 25 16 15 47 47 H 1.08996 * 109.61106 * 354.94197 * 26 13 11 48 48 H 1.08997 * 109.60969 * 115.28213 * 26 13 11 49 49 H 1.08995 * 109.47176 * 180.02562 * 27 9 8 50 50 H 1.08998 * 109.47123 * 59.99783 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1377 5 1 1.5753 -1.7716 1.1241 6 6 1.6090 -0.0694 2.4439 7 6 2.1577 -0.8668 3.6289 8 6 3.6821 -0.9489 3.5261 9 6 4.0685 -1.6454 2.2199 10 1 3.6488 -2.6512 2.2065 11 6 5.5699 -1.7267 2.1190 12 8 6.2611 -0.9084 2.6880 13 7 6.1445 -2.7087 1.3966 14 6 5.3210 -3.6459 0.6199 15 6 5.7970 -3.6138 -0.8424 16 7 7.2580 -3.7703 -0.8627 17 6 7.8419 -4.7686 -1.5959 18 1 8.7434 -5.2443 -1.2389 19 6 7.2751 -5.1691 -2.7982 20 7 6.3795 -4.4073 -3.3895 21 14 7.7835 -6.7893 -3.5765 22 1 6.8983 -7.8748 -3.0833 23 1 7.6660 -6.6873 -5.0534 24 1 9.1904 -7.0938 -3.2118 25 6 8.0814 -2.8365 -0.0815 26 6 7.6057 -2.8652 1.3762 27 6 3.5197 -0.8480 1.0350 28 1 -0.3634 0.4513 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3634 -1.0252 -0.0708 31 1 3.0828 1.3432 -0.0708 32 1 1.5898 1.9162 -0.8525 33 1 1.7043 1.8724 0.9233 34 1 2.0291 0.9364 2.4576 35 1 0.5230 -0.0105 2.5170 36 1 1.7380 -1.8726 3.6155 37 1 1.8828 -0.3703 4.5594 38 1 4.0730 -1.5173 4.3700 39 1 4.1018 0.0571 3.5395 40 1 5.4343 -4.6526 1.0224 41 1 4.2750 -3.3438 0.6725 42 1 5.5247 -2.6614 -1.2973 43 1 5.3338 -4.4298 -1.3970 44 1 5.9831 -4.6873 -4.2294 45 1 7.9718 -1.8289 -0.4823 46 1 9.1268 -3.1410 -0.1313 47 1 8.0690 -2.0475 1.9283 48 1 7.8781 -3.8162 1.8340 49 1 3.7946 -1.3445 0.1044 50 1 3.9394 0.1578 1.0484 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957325844.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:01:13 Heat of formation + Delta-G solvation = -30.270547 kcal Electronic energy + Delta-G solvation = -27668.729872 eV Core-core repulsion = 24116.393457 eV Total energy + Delta-G solvation = -3552.336415 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.62364 -39.96831 -38.43420 -36.45469 -35.59537 -33.39160 -32.29276 -31.50726 -30.58072 -28.72684 -28.46852 -25.88189 -25.22020 -24.63509 -23.94590 -22.68358 -21.62451 -20.45586 -19.93419 -18.71891 -17.75664 -17.32919 -16.71383 -16.46224 -16.24709 -16.03391 -15.61307 -15.49144 -15.43198 -15.19035 -15.05020 -14.92529 -14.72618 -14.24042 -13.88416 -13.51094 -13.30980 -13.18830 -13.07745 -12.93243 -12.68737 -12.65319 -12.55798 -12.52066 -12.22866 -12.21348 -12.05575 -11.98841 -11.88080 -11.65755 -11.51466 -11.46197 -11.32589 -10.64437 -10.52817 -9.80387 -9.12809 -8.59761 -7.88866 -5.43719 1.49094 1.50367 1.59390 1.59803 2.05788 2.51204 3.03174 3.25885 3.43406 3.59284 3.66959 3.90874 4.04327 4.07367 4.18103 4.22382 4.24804 4.32397 4.37711 4.42027 4.43445 4.49493 4.52110 4.57787 4.60571 4.66526 4.69599 4.75412 4.78832 4.80579 4.95781 5.02667 5.05770 5.06780 5.10933 5.14186 5.16119 5.18994 5.25094 5.34348 5.46545 5.53157 5.61413 5.65528 6.13401 6.19313 6.38180 6.50830 7.11505 7.17972 7.76732 8.34637 9.15825 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.015749 B = 0.004032 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.493747 B = 6943.400588 C = 8079.771896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.560 5.560 3 C 0.019 3.981 4 C 0.093 3.907 5 H 0.093 0.907 6 C -0.147 4.147 7 C -0.105 4.105 8 C -0.096 4.096 9 C -0.095 4.095 10 H 0.111 0.889 11 C 0.513 3.487 12 O -0.589 6.589 13 N -0.602 5.602 14 C 0.096 3.904 15 C 0.171 3.829 16 N -0.606 5.606 17 C -0.274 4.274 18 H 0.066 0.934 19 C -0.037 4.037 20 N -0.930 5.930 21 Si 0.968 3.032 22 H -0.280 1.280 23 H -0.296 1.296 24 H -0.270 1.270 25 C 0.133 3.867 26 C 0.104 3.896 27 C -0.094 4.094 28 H 0.039 0.961 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.039 0.961 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.072 0.928 41 H 0.105 0.895 42 H -0.002 1.002 43 H 0.065 0.935 44 H 0.253 0.747 45 H 0.003 0.997 46 H 0.071 0.929 47 H 0.083 0.917 48 H 0.073 0.927 49 H 0.057 0.943 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.662 6.339 12.607 19.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.283 5.283 3 C -0.129 4.129 4 C -0.016 4.016 5 H 0.111 0.889 6 C -0.186 4.186 7 C -0.143 4.143 8 C -0.134 4.134 9 C -0.117 4.117 10 H 0.128 0.872 11 C 0.302 3.698 12 O -0.470 6.470 13 N -0.333 5.333 14 C -0.028 4.028 15 C 0.045 3.955 16 N -0.330 5.330 17 C -0.403 4.403 18 H 0.083 0.917 19 C -0.234 4.234 20 N -0.574 5.574 21 Si 0.796 3.204 22 H -0.206 1.206 23 H -0.223 1.223 24 H -0.195 1.195 25 C 0.007 3.993 26 C -0.020 4.020 27 C -0.132 4.132 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.123 0.877 42 H 0.016 0.984 43 H 0.084 0.916 44 H 0.062 0.938 45 H 0.021 0.979 46 H 0.089 0.911 47 H 0.101 0.899 48 H 0.091 0.909 49 H 0.076 0.924 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.207 6.502 12.273 19.166 hybrid contribution 0.453 -0.175 -0.395 0.626 sum -12.753 6.327 11.878 18.541 Atomic orbital electron populations 1.22432 0.86056 1.02808 1.01138 1.62162 1.09147 1.14295 1.42665 1.22445 1.00347 0.89061 1.01096 1.21662 0.93089 0.98402 0.88398 0.88927 1.22189 1.01507 0.99799 0.95135 1.21434 0.93162 1.01424 0.98261 1.21353 0.97138 1.00350 0.94535 1.21314 0.89420 1.02741 0.98184 0.87153 1.21245 0.91801 0.79500 0.77216 1.90603 1.66094 1.41233 1.49115 1.48164 1.07527 1.30937 1.46661 1.22578 0.95056 0.92763 0.92386 1.20953 0.84071 0.98403 0.92121 1.44172 1.01482 1.32926 1.54398 1.19452 1.10650 1.10605 0.99636 0.91681 1.25940 0.99773 1.01684 0.96010 1.70168 1.32390 1.37264 1.17600 0.85269 0.78467 0.79883 0.76778 1.20602 1.22282 1.19467 1.21340 0.95595 0.91967 0.90432 1.21999 0.80425 1.01809 0.97754 1.21439 0.95918 0.99631 0.96219 0.94265 0.91137 0.90918 0.92734 0.90959 0.94255 0.92272 0.90235 0.90315 0.90275 0.91684 0.92716 0.90947 0.87750 0.98421 0.91638 0.93831 0.97899 0.91058 0.89880 0.90903 0.92400 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.31 127.69 1.19 1.56 16 2 N -0.56 -11.93 5.01 -923.27 -4.62 -16.55 16 3 C 0.02 0.38 8.82 127.69 1.13 1.50 16 4 C 0.09 1.87 2.23 44.91 0.10 1.97 16 5 H 0.09 1.74 8.13 -2.39 -0.02 1.72 16 6 C -0.15 -2.39 4.51 30.59 0.14 -2.26 16 7 C -0.10 -1.61 5.92 30.60 0.18 -1.43 16 8 C -0.10 -2.10 4.75 30.59 0.15 -1.95 16 9 C -0.10 -2.40 1.66 -11.54 -0.02 -2.42 16 10 H 0.11 2.38 6.60 -2.39 -0.02 2.37 16 11 C 0.51 17.52 6.78 87.66 0.59 18.12 16 12 O -0.59 -23.71 15.53 -3.05 -0.05 -23.76 16 13 N -0.60 -21.53 2.94 -817.15 -2.40 -23.94 16 14 C 0.10 3.33 6.21 86.57 0.54 3.87 16 15 C 0.17 7.89 5.49 86.57 0.48 8.36 16 16 N -0.61 -30.17 2.93 -697.35 -2.04 -32.22 16 17 C -0.27 -14.71 9.52 84.04 0.80 -13.91 16 18 H 0.07 3.42 7.88 -2.91 -0.02 3.40 16 19 C -0.04 -2.02 4.90 84.86 0.42 -1.60 16 20 N -0.93 -53.77 11.55 21.65 0.25 -53.52 16 21 Si 0.97 43.50 29.58 68.60 2.03 45.53 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 C 0.13 5.79 6.67 86.41 0.58 6.36 16 26 C 0.10 3.88 6.60 86.41 0.57 4.45 16 27 C -0.09 -2.42 4.05 30.59 0.12 -2.30 16 28 H 0.04 0.53 6.44 -2.39 -0.02 0.51 16 29 H 0.07 1.06 8.12 -2.39 -0.02 1.04 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 1.30 6.32 -2.39 -0.02 1.28 16 32 H 0.07 1.34 8.12 -2.39 -0.02 1.32 16 33 H 0.04 0.70 6.28 -2.39 -0.01 0.69 16 34 H 0.06 1.07 6.39 -2.38 -0.02 1.06 16 35 H 0.08 1.07 6.52 -2.38 -0.02 1.06 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.05 1.40 7.86 -2.38 -0.02 1.39 16 40 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 41 H 0.10 2.99 4.91 -2.39 -0.01 2.98 16 42 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 43 H 0.07 3.33 6.40 -2.39 -0.02 3.31 16 44 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 45 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 46 H 0.07 2.96 7.93 -2.39 -0.02 2.94 16 47 H 0.08 3.06 6.99 -2.39 -0.02 3.04 16 48 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 49 H 0.06 1.78 7.32 -2.39 -0.02 1.77 16 50 H 0.05 1.57 6.42 -2.39 -0.02 1.55 16 Total: -1.00 -66.23 368.34 1.02 -65.21 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: 0.91 Total: 18.94 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: 6.95 Total: 20.32 kcal Atomic # 7 Polarization: -117.41 SS G_CDS: -8.82 Total: -126.23 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.05 Total: -23.76 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -66.23 1.02 -65.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957325844.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.940 kcal (2) G-P(sol) polarization free energy of solvation -66.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds