Wall clock time and date at job start Tue Mar 31 2020 09:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47843 * 111.00275 * 2 1 4 4 C 1.54913 * 104.79635 * 146.36642 * 3 2 1 5 5 C 1.55398 * 101.73821 * 323.01277 * 4 3 2 6 6 C 1.47457 * 110.99880 * 120.84190 * 2 1 3 7 7 H 1.08997 * 109.88949 * 117.16962 * 6 2 1 8 8 C 1.50700 * 109.88500 * 356.14337 * 6 2 1 9 9 O 1.21283 * 120.00413 * 308.76702 * 8 6 2 10 10 N 1.34784 * 119.99675 * 128.76693 * 8 6 2 11 11 C 1.46491 * 119.99594 * 179.97438 * 10 8 6 12 12 C 1.53009 * 109.46943 * 180.02562 * 11 10 8 13 13 H 1.09006 * 109.44633 * 65.05400 * 12 11 10 14 14 C 1.54858 * 109.45084 * 185.00097 * 12 11 10 15 15 C 1.47094 * 110.32189 * 191.30829 * 14 12 11 16 16 C 1.52574 * 114.32621 * 297.19676 * 15 14 12 17 17 C 1.50886 * 109.35646 * 85.01313 * 16 15 14 18 18 C 1.53950 * 110.09367 * 268.11395 * 17 16 15 19 19 N 1.44584 * 109.44672 * 305.13625 * 12 11 10 20 20 C 1.36934 * 118.64352 * 329.22634 * 19 12 11 21 21 H 1.08002 * 119.99979 * 321.70879 * 20 19 12 22 22 C 1.38814 * 119.99861 * 141.70075 * 20 19 12 23 23 N 1.31627 * 119.99842 * 350.87142 * 22 20 19 24 24 Si 1.86801 * 120.00127 * 170.86547 * 22 20 19 25 25 H 1.48502 * 109.47065 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.47002 * 120.00329 * 24 22 20 27 27 H 1.48493 * 109.47165 * 240.00321 * 24 22 20 28 28 H 1.09006 * 109.46743 * 309.08225 * 1 2 3 29 29 H 1.09000 * 109.47037 * 69.07980 * 1 2 3 30 30 H 1.08995 * 109.47611 * 189.08724 * 1 2 3 31 31 H 1.09004 * 110.37079 * 265.19206 * 3 2 1 32 32 H 1.08998 * 110.37701 * 27.42009 * 3 2 1 33 33 H 1.08993 * 110.99509 * 81.01673 * 4 3 2 34 34 H 1.09005 * 110.98473 * 204.79935 * 4 3 2 35 35 H 1.08998 * 110.68317 * 277.17852 * 5 4 3 36 36 H 1.09006 * 110.84399 * 153.86516 * 5 4 3 37 37 H 0.96999 * 119.99393 * 359.97438 * 10 8 6 38 38 H 1.08994 * 109.47713 * 299.99754 * 11 10 8 39 39 H 1.09003 * 109.47392 * 60.00475 * 11 10 8 40 40 H 1.08997 * 109.33270 * 311.56785 * 14 12 11 41 41 H 1.08993 * 109.32736 * 71.04896 * 14 12 11 42 42 H 1.08996 * 108.51259 * 58.45334 * 15 14 12 43 43 H 1.09003 * 108.51736 * 175.94554 * 15 14 12 44 44 H 1.08989 * 109.49074 * 204.97528 * 16 15 14 45 45 H 1.08999 * 109.48552 * 325.05213 * 16 15 14 46 46 H 1.08997 * 109.36817 * 28.30565 * 17 16 15 47 47 H 1.08995 * 109.36298 * 148.05349 * 17 16 15 48 48 H 1.09000 * 108.94931 * 161.24943 * 18 17 16 49 49 H 1.08992 * 108.94926 * 279.88198 * 18 17 16 50 50 H 0.96992 * 119.99301 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3802 0.0000 4 6 3.3049 1.3026 0.8296 5 6 2.9182 0.2789 1.9329 6 6 1.9974 -0.7058 1.1820 7 1 2.5672 -1.5802 0.8677 8 6 0.8610 -1.1290 2.0767 9 8 0.0252 -0.3198 2.4194 10 7 0.7736 -2.4070 2.4962 11 6 -0.3307 -2.8182 3.3664 12 6 -0.1950 -4.3068 3.6935 13 1 0.7093 -4.4685 4.2803 14 6 -1.4279 -4.7702 4.5080 15 6 -1.1987 -6.1135 5.0619 16 6 -1.0094 -7.2029 4.0106 17 6 0.4362 -7.2361 3.5796 18 6 0.6440 -6.3267 2.3549 19 7 -0.1128 -5.0641 2.4647 20 6 -0.7640 -4.5907 1.3570 21 1 -1.7330 -4.1246 1.4584 22 6 -0.1787 -4.7099 0.1040 23 7 1.0705 -5.1105 -0.0035 24 14 -1.1639 -4.3017 -1.4298 25 1 -2.5328 -3.8776 -1.0405 26 1 -0.4962 -3.2001 -2.1684 27 1 -1.2458 -5.5025 -2.2995 28 1 -0.3633 0.6479 0.7978 29 1 -0.3633 0.3669 -0.9599 30 1 -0.3634 -1.0147 0.1623 31 1 2.2148 1.7037 -1.0183 32 1 1.2882 2.0596 0.4705 33 1 4.1303 0.9280 0.2243 34 1 3.5500 2.2721 1.2634 35 1 2.3783 0.7706 2.7421 36 1 3.8018 -0.2336 2.3134 37 1 1.4420 -3.0542 2.2217 38 1 -0.3008 -2.2396 4.2896 39 1 -1.2788 -2.6426 2.8580 40 1 -1.6058 -4.0693 5.3235 41 1 -2.3022 -4.7926 3.8576 42 1 -0.3092 -6.0812 5.6910 43 1 -2.0509 -6.3802 5.6870 44 1 -1.2848 -8.1687 4.4341 45 1 -1.6412 -6.9899 3.1484 46 1 1.0658 -6.8887 4.3987 47 1 0.7124 -8.2580 3.3196 48 1 1.7052 -6.0961 2.2612 49 1 0.3186 -6.8577 1.4605 50 1 1.4792 -5.1941 -0.8791 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968780349.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:50:13 Heat of formation + Delta-G solvation = -12.170274 kcal Electronic energy + Delta-G solvation = -28398.841447 eV Core-core repulsion = 24847.289919 eV Total energy + Delta-G solvation = -3551.551528 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.13533 -38.35338 -37.01702 -34.43230 -33.39179 -31.90400 -31.63949 -30.75224 -29.30201 -26.86176 -25.60865 -25.16498 -23.47641 -22.66182 -21.17547 -21.06495 -19.91809 -19.24319 -19.00537 -16.90775 -16.30921 -15.72570 -15.39991 -15.18266 -14.76077 -14.64855 -14.32552 -14.10439 -13.65034 -13.55550 -13.25761 -13.00935 -12.90491 -12.58271 -12.26716 -11.94955 -11.88603 -11.60168 -11.39167 -11.27515 -11.17577 -11.08961 -11.00452 -10.84753 -10.80859 -10.63326 -10.56682 -10.20481 -10.07419 -9.98856 -9.71137 -9.59181 -9.54054 -9.32974 -8.44819 -8.20678 -7.79005 -6.54129 -5.82097 -3.39071 3.17744 3.36320 3.46559 3.47786 3.96805 4.36073 4.47917 4.72817 4.84997 5.14692 5.22334 5.34420 5.40983 5.46240 5.51252 5.58619 5.64114 5.65107 5.83227 5.86155 5.90669 5.93016 5.97229 6.01579 6.01977 6.10593 6.15432 6.27183 6.31080 6.36209 6.38277 6.53154 6.56696 6.63522 6.65317 6.71229 6.77034 6.83242 7.00479 7.10474 7.18843 7.27019 7.33451 7.37223 7.61379 7.83317 8.38511 8.50343 8.97096 9.22618 9.82593 10.34257 11.22978 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.014670 B = 0.005468 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.257445 B = 5119.595983 C = 6073.300171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 N -0.507 5.507 3 C 0.039 3.961 4 C -0.126 4.126 5 C -0.127 4.127 6 C 0.056 3.944 7 H 0.102 0.898 8 C 0.501 3.499 9 O -0.568 6.568 10 N -0.681 5.681 11 C 0.132 3.868 12 C 0.174 3.826 13 H 0.042 0.958 14 C -0.136 4.136 15 C -0.100 4.100 16 C -0.106 4.106 17 C -0.143 4.143 18 C 0.181 3.819 19 N -0.580 5.580 20 C -0.257 4.257 21 H 0.055 0.945 22 C 0.027 3.973 23 N -0.896 5.896 24 Si 0.886 3.114 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.291 1.291 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.413 0.587 38 H 0.046 0.954 39 H 0.066 0.934 40 H 0.047 0.953 41 H 0.062 0.938 42 H 0.046 0.954 43 H 0.039 0.961 44 H 0.039 0.961 45 H 0.073 0.927 46 H 0.044 0.956 47 H 0.048 0.952 48 H 0.027 0.973 49 H 0.062 0.938 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.417 4.992 5.529 8.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.232 5.232 3 C -0.089 4.089 4 C -0.164 4.164 5 C -0.166 4.166 6 C -0.056 4.056 7 H 0.120 0.880 8 C 0.286 3.714 9 O -0.449 6.449 10 N -0.330 5.330 11 C 0.007 3.993 12 C 0.065 3.935 13 H 0.060 0.940 14 C -0.177 4.177 15 C -0.138 4.138 16 C -0.144 4.144 17 C -0.182 4.182 18 C 0.057 3.943 19 N -0.302 5.302 20 C -0.387 4.387 21 H 0.073 0.927 22 C -0.173 4.173 23 N -0.538 5.538 24 Si 0.716 3.284 25 H -0.204 1.204 26 H -0.211 1.211 27 H -0.218 1.218 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.250 0.750 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.092 0.908 46 H 0.063 0.937 47 H 0.067 0.933 48 H 0.045 0.955 49 H 0.080 0.920 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.103 5.218 5.176 7.979 hybrid contribution -0.615 0.055 -0.435 0.755 sum 2.488 5.273 4.741 7.515 Atomic orbital electron populations 1.22926 0.86838 1.03291 1.00892 1.63970 1.09323 1.13723 1.36164 1.23125 0.95533 0.90064 1.00164 1.22718 0.97830 0.98986 0.96826 1.22764 0.99060 0.96565 0.98195 1.22546 0.94621 0.98879 0.89533 0.87961 1.20749 0.86933 0.82805 0.80956 1.90582 1.43112 1.52521 1.58667 1.45807 1.28635 1.09721 1.48794 1.21413 0.90785 0.95017 0.92133 1.20522 0.94825 0.89060 0.89072 0.93969 1.21363 1.01088 0.96045 0.99185 1.20285 1.00023 0.95771 0.97722 1.20942 0.97980 0.96301 0.99140 1.22060 0.95933 0.99771 1.00393 1.20956 0.94815 0.84954 0.93618 1.43592 1.59842 1.20670 1.06132 1.18896 0.98644 1.36056 0.85146 0.92712 1.25136 0.94894 0.99203 0.98115 1.69948 1.10907 1.50095 1.22868 0.86487 0.79963 0.77888 0.84102 1.20426 1.21057 1.21785 0.91923 0.92737 0.91072 0.90350 0.93399 0.90564 0.90887 0.90785 0.90349 0.74974 0.93571 0.91561 0.93434 0.91940 0.93559 0.94174 0.94228 0.90821 0.93729 0.93315 0.95520 0.91990 0.93637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 8.18 60.06 0.49 0.65 16 2 N -0.51 -8.93 5.44 -232.94 -1.27 -10.20 16 3 C 0.04 0.55 6.73 -2.30 -0.02 0.53 16 4 C -0.13 -1.50 7.08 -24.45 -0.17 -1.68 16 5 C -0.13 -1.75 6.48 -24.77 -0.16 -1.91 16 6 C 0.06 0.96 3.83 -67.87 -0.26 0.70 16 7 H 0.10 1.83 7.96 -51.93 -0.41 1.42 16 8 C 0.50 9.76 4.95 -10.98 -0.05 9.71 16 9 O -0.57 -12.21 13.73 5.55 0.08 -12.13 16 10 N -0.68 -13.39 4.71 -60.29 -0.28 -13.67 16 11 C 0.13 2.53 4.52 -4.04 -0.02 2.51 16 12 C 0.17 3.25 2.19 -67.97 -0.15 3.11 16 13 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 14 C -0.14 -2.28 5.06 -28.59 -0.14 -2.43 16 15 C -0.10 -1.56 5.15 -29.78 -0.15 -1.72 16 16 C -0.11 -1.77 5.51 -28.01 -0.15 -1.92 16 17 C -0.14 -2.48 5.71 -27.30 -0.16 -2.64 16 18 C 0.18 3.85 4.67 -2.94 -0.01 3.83 16 19 N -0.58 -12.41 1.72 -164.46 -0.28 -12.69 16 20 C -0.26 -6.25 7.24 -15.06 -0.11 -6.36 16 21 H 0.06 1.42 7.17 -52.49 -0.38 1.04 16 22 C 0.03 0.68 5.00 -17.43 -0.09 0.59 16 23 N -0.90 -23.12 11.49 55.49 0.64 -22.49 16 24 Si 0.89 21.21 29.56 -169.99 -5.03 16.18 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 H 0.06 1.22 5.80 -51.93 -0.30 0.92 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 1.56 6.93 -51.93 -0.36 1.20 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.05 0.68 7.62 -51.93 -0.40 0.28 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 1.09 7.73 -51.93 -0.40 0.68 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.41 8.55 7.94 -40.82 -0.32 8.22 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.07 1.43 7.08 -51.93 -0.37 1.06 16 40 H 0.05 0.72 8.11 -51.93 -0.42 0.30 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.05 0.69 7.36 -51.93 -0.38 0.31 16 43 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.04 0.59 8.14 -51.94 -0.42 0.17 16 45 H 0.07 1.41 7.48 -51.93 -0.39 1.03 16 46 H 0.04 0.74 7.32 -51.93 -0.38 0.36 16 47 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.03 0.61 7.94 -51.93 -0.41 0.20 16 49 H 0.06 1.49 7.02 -51.93 -0.36 1.13 16 50 H 0.25 6.58 8.31 -40.82 -0.34 6.24 16 LS Contribution 371.54 15.07 5.60 5.60 Total: -1.00 -26.33 371.54 -10.78 -37.10 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -9.07 Total: 9.31 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -1.16 Total: 2.98 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -1.20 Total: -59.05 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.08 Total: -12.13 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -26.33 -10.78 -37.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968780349.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.931 kcal (2) G-P(sol) polarization free energy of solvation -26.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds