Wall clock time and date at job start Tue Mar 31 2020 09:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47843 * 111.00275 * 2 1 4 4 C 1.54913 * 104.79635 * 146.36642 * 3 2 1 5 5 C 1.55398 * 101.73821 * 323.01277 * 4 3 2 6 6 C 1.47457 * 110.99880 * 120.84190 * 2 1 3 7 7 H 1.08997 * 109.88949 * 117.16962 * 6 2 1 8 8 C 1.50700 * 109.88500 * 356.14337 * 6 2 1 9 9 O 1.21283 * 120.00413 * 308.76702 * 8 6 2 10 10 N 1.34784 * 119.99675 * 128.76693 * 8 6 2 11 11 C 1.46491 * 119.99594 * 179.97438 * 10 8 6 12 12 C 1.53009 * 109.46943 * 180.02562 * 11 10 8 13 13 H 1.09006 * 109.44633 * 65.05400 * 12 11 10 14 14 C 1.54858 * 109.45084 * 185.00097 * 12 11 10 15 15 C 1.47094 * 110.32189 * 191.30829 * 14 12 11 16 16 C 1.52574 * 114.32621 * 297.19676 * 15 14 12 17 17 C 1.50886 * 109.35646 * 85.01313 * 16 15 14 18 18 C 1.53950 * 110.09367 * 268.11395 * 17 16 15 19 19 N 1.44584 * 109.44672 * 305.13625 * 12 11 10 20 20 C 1.36934 * 118.64352 * 329.22634 * 19 12 11 21 21 H 1.08002 * 119.99979 * 321.70879 * 20 19 12 22 22 C 1.38814 * 119.99861 * 141.70075 * 20 19 12 23 23 N 1.31627 * 119.99842 * 350.87142 * 22 20 19 24 24 Si 1.86801 * 120.00127 * 170.86547 * 22 20 19 25 25 H 1.48502 * 109.47065 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.47002 * 120.00329 * 24 22 20 27 27 H 1.48493 * 109.47165 * 240.00321 * 24 22 20 28 28 H 1.09006 * 109.46743 * 309.08225 * 1 2 3 29 29 H 1.09000 * 109.47037 * 69.07980 * 1 2 3 30 30 H 1.08995 * 109.47611 * 189.08724 * 1 2 3 31 31 H 1.09004 * 110.37079 * 265.19206 * 3 2 1 32 32 H 1.08998 * 110.37701 * 27.42009 * 3 2 1 33 33 H 1.08993 * 110.99509 * 81.01673 * 4 3 2 34 34 H 1.09005 * 110.98473 * 204.79935 * 4 3 2 35 35 H 1.08998 * 110.68317 * 277.17852 * 5 4 3 36 36 H 1.09006 * 110.84399 * 153.86516 * 5 4 3 37 37 H 0.96999 * 119.99393 * 359.97438 * 10 8 6 38 38 H 1.08994 * 109.47713 * 299.99754 * 11 10 8 39 39 H 1.09003 * 109.47392 * 60.00475 * 11 10 8 40 40 H 1.08997 * 109.33270 * 311.56785 * 14 12 11 41 41 H 1.08993 * 109.32736 * 71.04896 * 14 12 11 42 42 H 1.08996 * 108.51259 * 58.45334 * 15 14 12 43 43 H 1.09003 * 108.51736 * 175.94554 * 15 14 12 44 44 H 1.08989 * 109.49074 * 204.97528 * 16 15 14 45 45 H 1.08999 * 109.48552 * 325.05213 * 16 15 14 46 46 H 1.08997 * 109.36817 * 28.30565 * 17 16 15 47 47 H 1.08995 * 109.36298 * 148.05349 * 17 16 15 48 48 H 1.09000 * 108.94931 * 161.24943 * 18 17 16 49 49 H 1.08992 * 108.94926 * 279.88198 * 18 17 16 50 50 H 0.96992 * 119.99301 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3802 0.0000 4 6 3.3049 1.3026 0.8296 5 6 2.9182 0.2789 1.9329 6 6 1.9974 -0.7058 1.1820 7 1 2.5672 -1.5802 0.8677 8 6 0.8610 -1.1290 2.0767 9 8 0.0252 -0.3198 2.4194 10 7 0.7736 -2.4070 2.4962 11 6 -0.3307 -2.8182 3.3664 12 6 -0.1950 -4.3068 3.6935 13 1 0.7093 -4.4685 4.2803 14 6 -1.4279 -4.7702 4.5080 15 6 -1.1987 -6.1135 5.0619 16 6 -1.0094 -7.2029 4.0106 17 6 0.4362 -7.2361 3.5796 18 6 0.6440 -6.3267 2.3549 19 7 -0.1128 -5.0641 2.4647 20 6 -0.7640 -4.5907 1.3570 21 1 -1.7330 -4.1246 1.4584 22 6 -0.1787 -4.7099 0.1040 23 7 1.0705 -5.1105 -0.0035 24 14 -1.1639 -4.3017 -1.4298 25 1 -2.5328 -3.8776 -1.0405 26 1 -0.4962 -3.2001 -2.1684 27 1 -1.2458 -5.5025 -2.2995 28 1 -0.3633 0.6479 0.7978 29 1 -0.3633 0.3669 -0.9599 30 1 -0.3634 -1.0147 0.1623 31 1 2.2148 1.7037 -1.0183 32 1 1.2882 2.0596 0.4705 33 1 4.1303 0.9280 0.2243 34 1 3.5500 2.2721 1.2634 35 1 2.3783 0.7706 2.7421 36 1 3.8018 -0.2336 2.3134 37 1 1.4420 -3.0542 2.2217 38 1 -0.3008 -2.2396 4.2896 39 1 -1.2788 -2.6426 2.8580 40 1 -1.6058 -4.0693 5.3235 41 1 -2.3022 -4.7926 3.8576 42 1 -0.3092 -6.0812 5.6910 43 1 -2.0509 -6.3802 5.6870 44 1 -1.2848 -8.1687 4.4341 45 1 -1.6412 -6.9899 3.1484 46 1 1.0658 -6.8887 4.3987 47 1 0.7124 -8.2580 3.3196 48 1 1.7052 -6.0961 2.2612 49 1 0.3186 -6.8577 1.4605 50 1 1.4792 -5.1941 -0.8791 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968780349.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:50:12 Heat of formation + Delta-G solvation = -27.908474 kcal Electronic energy + Delta-G solvation = -28399.523907 eV Core-core repulsion = 24847.289919 eV Total energy + Delta-G solvation = -3552.233988 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.59503 -39.87648 -38.43268 -35.97218 -35.14534 -33.34773 -32.97924 -32.52494 -30.61173 -28.47091 -27.19512 -26.58322 -25.20775 -24.12658 -22.59815 -22.18971 -21.40106 -20.77324 -20.58723 -18.43643 -17.94398 -17.35317 -16.92511 -16.58236 -16.36456 -16.09091 -15.84787 -15.71803 -15.19751 -15.06312 -14.74722 -14.43298 -14.40017 -13.99175 -13.67709 -13.42723 -13.37017 -13.07197 -12.95375 -12.89937 -12.80294 -12.69841 -12.48383 -12.35739 -12.25796 -12.07372 -12.03691 -11.72339 -11.59065 -11.38971 -11.28387 -11.19427 -11.05611 -10.80009 -10.40703 -9.80575 -9.24267 -8.39426 -7.78307 -5.34849 1.37189 1.45931 1.47876 1.64638 2.45534 2.52547 3.02679 3.37053 3.56085 3.62345 3.71600 3.89977 4.04880 4.10442 4.19903 4.28028 4.30642 4.38963 4.43873 4.51418 4.52552 4.59963 4.62502 4.67362 4.79958 4.81961 4.85941 4.95036 4.99796 5.01283 5.05689 5.09213 5.13637 5.25869 5.27187 5.27733 5.38634 5.43251 5.56309 5.64790 5.72185 5.77231 5.81454 5.82202 5.86908 5.95068 6.53547 6.77211 7.30342 7.37923 7.99505 8.43451 9.21969 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.014670 B = 0.005468 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.257445 B = 5119.595983 C = 6073.300171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.523 5.523 3 C 0.034 3.966 4 C -0.114 4.114 5 C -0.121 4.121 6 C 0.054 3.946 7 H 0.092 0.908 8 C 0.498 3.502 9 O -0.590 6.590 10 N -0.683 5.683 11 C 0.136 3.864 12 C 0.174 3.826 13 H 0.055 0.945 14 C -0.128 4.128 15 C -0.100 4.100 16 C -0.103 4.103 17 C -0.132 4.132 18 C 0.190 3.810 19 N -0.584 5.584 20 C -0.240 4.240 21 H 0.036 0.964 22 C -0.005 4.005 23 N -0.907 5.907 24 Si 0.920 3.080 25 H -0.284 1.284 26 H -0.295 1.295 27 H -0.293 1.293 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.032 0.968 31 H 0.095 0.905 32 H 0.045 0.955 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.065 0.935 36 H 0.099 0.901 37 H 0.409 0.591 38 H 0.062 0.938 39 H 0.036 0.964 40 H 0.070 0.930 41 H 0.039 0.961 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.041 0.959 46 H 0.060 0.940 47 H 0.061 0.939 48 H 0.006 0.994 49 H 0.026 0.974 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.515 5.400 7.299 10.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.248 5.248 3 C -0.093 4.093 4 C -0.152 4.152 5 C -0.160 4.160 6 C -0.058 4.058 7 H 0.110 0.890 8 C 0.285 3.715 9 O -0.473 6.473 10 N -0.331 5.331 11 C 0.011 3.989 12 C 0.067 3.933 13 H 0.073 0.927 14 C -0.168 4.168 15 C -0.137 4.137 16 C -0.141 4.141 17 C -0.170 4.170 18 C 0.066 3.934 19 N -0.307 5.307 20 C -0.371 4.371 21 H 0.053 0.947 22 C -0.203 4.203 23 N -0.552 5.552 24 Si 0.751 3.249 25 H -0.209 1.209 26 H -0.222 1.222 27 H -0.220 1.220 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.051 0.949 31 H 0.113 0.887 32 H 0.064 0.936 33 H 0.107 0.893 34 H 0.119 0.881 35 H 0.084 0.916 36 H 0.118 0.882 37 H 0.244 0.756 38 H 0.080 0.920 39 H 0.055 0.945 40 H 0.089 0.911 41 H 0.058 0.942 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.060 0.940 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.024 0.976 49 H 0.045 0.955 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.194 5.626 6.966 9.888 hybrid contribution -1.005 -0.054 -0.977 1.403 sum 3.189 5.572 5.989 8.780 Atomic orbital electron populations 1.22692 0.88147 1.00588 1.01206 1.63990 1.08156 1.16216 1.36423 1.23278 0.96461 0.87857 1.01712 1.22738 0.96823 0.99809 0.95780 1.22775 0.98806 0.96229 0.98173 1.22600 0.94121 0.99565 0.89467 0.89021 1.21206 0.87215 0.82394 0.80709 1.90560 1.44123 1.53021 1.59608 1.45874 1.28477 1.09787 1.48978 1.21381 0.89369 0.95835 0.92284 1.20676 0.96384 0.88185 0.88103 0.92675 1.21271 0.98739 0.97724 0.99071 1.20269 1.01712 0.94205 0.97554 1.20905 0.96571 0.98134 0.98459 1.21930 0.96978 0.99389 0.98736 1.20752 0.93218 0.85113 0.94350 1.43626 1.59453 1.21297 1.06319 1.18744 0.97739 1.34496 0.86141 0.94683 1.25398 0.95415 1.00289 0.99199 1.70014 1.11316 1.51470 1.22370 0.85957 0.78986 0.77071 0.82891 1.20936 1.22185 1.22000 0.92792 0.91455 0.94909 0.88713 0.93612 0.89325 0.88103 0.91641 0.88211 0.75552 0.91956 0.94536 0.91101 0.94235 0.91972 0.92045 0.91780 0.94008 0.92100 0.92003 0.97569 0.95510 0.94323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.86 8.18 127.69 1.04 1.90 16 2 N -0.52 -18.28 5.44 -890.88 -4.85 -23.13 16 3 C 0.03 0.89 6.73 86.78 0.58 1.48 16 4 C -0.11 -2.38 7.08 32.07 0.23 -2.15 16 5 C -0.12 -3.11 6.48 31.87 0.21 -2.90 16 6 C 0.05 1.84 3.83 44.51 0.17 2.01 16 7 H 0.09 3.32 7.96 -2.39 -0.02 3.30 16 8 C 0.50 19.78 4.95 87.66 0.43 20.21 16 9 O -0.59 -25.88 13.73 -3.04 -0.04 -25.92 16 10 N -0.68 -27.38 4.71 -463.05 -2.18 -29.56 16 11 C 0.14 5.28 4.52 86.38 0.39 5.67 16 12 C 0.17 6.38 2.19 45.99 0.10 6.48 16 13 H 0.06 1.92 8.07 -2.38 -0.02 1.90 16 14 C -0.13 -4.06 5.06 29.39 0.15 -3.91 16 15 C -0.10 -2.79 5.15 28.62 0.15 -2.64 16 16 C -0.10 -3.20 5.51 29.77 0.16 -3.04 16 17 C -0.13 -4.32 5.71 30.23 0.17 -4.15 16 18 C 0.19 8.13 4.67 86.49 0.40 8.53 16 19 N -0.58 -25.29 1.72 -674.23 -1.16 -26.45 16 20 C -0.24 -12.05 7.24 84.03 0.61 -11.44 16 21 H 0.04 1.91 7.17 -2.91 -0.02 1.89 16 22 C 0.00 -0.24 5.00 84.86 0.42 0.18 16 23 N -0.91 -48.26 11.49 21.65 0.25 -48.01 16 24 Si 0.92 45.03 29.56 68.60 2.03 47.05 16 25 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 26 H -0.29 -14.84 7.11 99.48 0.71 -14.14 16 27 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 28 H 0.05 2.16 5.80 -2.38 -0.01 2.15 16 29 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.03 1.49 6.93 -2.39 -0.02 1.47 16 31 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 32 H 0.05 1.23 7.62 -2.39 -0.02 1.21 16 33 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.06 1.81 7.73 -2.39 -0.02 1.79 16 36 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 37 H 0.41 17.23 7.94 -92.71 -0.74 16.50 16 38 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.04 1.63 7.08 -2.39 -0.02 1.61 16 40 H 0.07 1.94 8.11 -2.39 -0.02 1.92 16 41 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.06 1.58 7.36 -2.39 -0.02 1.57 16 43 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.04 1.57 7.48 -2.39 -0.02 1.55 16 46 H 0.06 1.83 7.32 -2.39 -0.02 1.81 16 47 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.01 0.29 7.94 -2.39 -0.02 0.27 16 49 H 0.03 1.31 7.02 -2.39 -0.02 1.29 16 50 H 0.25 13.20 8.31 -92.71 -0.77 12.43 16 Total: -1.00 -59.09 371.54 -0.56 -59.66 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: 0.17 Total: 30.13 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: 5.23 Total: 16.24 kcal Atomic # 7 Polarization: -119.21 SS G_CDS: -7.94 Total: -127.15 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.04 Total: -25.92 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -59.09 -0.56 -59.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968780349.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.747 kcal (2) G-P(sol) polarization free energy of solvation -59.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds