Wall clock time and date at job start Tue Mar 31 2020 09:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34774 * 119.99813 * 2 1 4 4 O 1.21284 * 120.00216 * 3.61098 * 3 2 1 5 5 C 1.50703 * 119.99938 * 183.60983 * 3 2 1 6 6 C 1.53121 * 109.52237 * 289.44099 * 5 3 2 7 7 C 1.53033 * 109.27902 * 182.43835 * 6 5 3 8 8 N 1.46850 * 109.52292 * 59.18051 * 7 6 5 9 9 C 1.46901 * 111.00202 * 174.15946 * 8 7 6 10 10 C 1.46852 * 111.19654 * 298.25915 * 8 7 6 11 11 C 1.53033 * 109.52583 * 61.73931 * 10 8 7 12 12 C 1.46497 * 120.00193 * 180.02562 * 2 1 3 13 13 C 1.53041 * 109.46261 * 64.26593 * 12 2 1 14 14 C 1.53188 * 109.31392 * 178.61635 * 13 12 2 15 15 N 1.46920 * 108.89242 * 54.56728 * 14 13 12 16 16 C 1.36940 * 120.63135 * 126.46546 * 15 14 13 17 17 H 1.08000 * 119.99843 * 336.55755 * 16 15 14 18 18 C 1.38814 * 120.00259 * 156.55109 * 16 15 14 19 19 N 1.31622 * 119.99980 * 340.62116 * 18 16 15 20 20 Si 1.86793 * 120.00213 * 160.61928 * 18 16 15 21 21 H 1.48503 * 109.46881 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.47328 * 120.00318 * 20 18 16 23 23 H 1.48502 * 109.47093 * 240.00251 * 20 18 16 24 24 C 1.46964 * 118.71556 * 306.64092 * 15 14 13 25 25 C 1.53047 * 109.45699 * 304.20332 * 12 2 1 26 26 H 1.09001 * 109.47556 * 266.68476 * 1 2 3 27 27 H 1.09005 * 109.47573 * 26.68382 * 1 2 3 28 28 H 1.09000 * 109.47435 * 146.68313 * 1 2 3 29 29 H 1.08996 * 109.52372 * 49.62791 * 5 3 2 30 30 H 1.09002 * 109.50345 * 302.38146 * 6 5 3 31 31 H 1.08997 * 109.50187 * 62.49842 * 6 5 3 32 32 H 1.08992 * 109.46557 * 299.16687 * 7 6 5 33 33 H 1.09001 * 109.46204 * 179.19005 * 7 6 5 34 34 H 1.09001 * 109.46912 * 184.20798 * 9 8 7 35 35 H 1.09002 * 109.46641 * 304.21043 * 9 8 7 36 36 H 1.08997 * 109.46920 * 64.20676 * 9 8 7 37 37 H 1.08994 * 109.45901 * 301.72304 * 10 8 7 38 38 H 1.08997 * 109.45150 * 181.75408 * 10 8 7 39 39 H 1.08993 * 109.50603 * 180.87763 * 11 10 8 40 40 H 1.09003 * 109.53158 * 60.78423 * 11 10 8 41 41 H 1.08991 * 109.45201 * 184.24215 * 12 2 1 42 42 H 1.09002 * 109.49062 * 58.66492 * 13 12 2 43 43 H 1.08995 * 109.49977 * 298.57039 * 13 12 2 44 44 H 1.09002 * 109.59025 * 174.42698 * 14 13 12 45 45 H 1.09000 * 109.58580 * 294.70734 * 14 13 12 46 46 H 0.96994 * 120.00346 * 179.97438 * 19 18 16 47 47 H 1.09000 * 109.46528 * 293.57025 * 24 15 14 48 48 H 1.09008 * 109.71253 * 173.28660 * 24 15 14 49 49 H 1.08996 * 109.49518 * 301.33657 * 25 12 2 50 50 H 1.09004 * 109.49858 * 61.40143 * 25 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5342 2.2165 0.0662 5 6 3.6436 1.1685 -0.0822 6 6 4.2283 0.6460 1.2330 7 6 5.7560 0.7069 1.1662 8 7 6.1824 2.0932 0.9368 9 6 7.6450 2.2123 1.0048 10 6 5.6719 2.6008 -0.3432 11 6 4.1418 2.5965 -0.3215 12 6 2.1975 -1.2687 -0.0006 13 6 1.9099 -2.0230 -1.3008 14 6 2.7044 -3.3327 -1.3130 15 7 2.3910 -4.0906 -0.0940 16 6 1.9626 -5.3890 -0.1705 17 1 1.4947 -5.7509 -1.0741 18 6 2.1298 -6.2401 0.9133 19 7 3.0106 -5.9507 1.8476 20 14 1.1047 -7.7960 1.0459 21 1 0.1952 -7.8907 -0.1242 22 1 2.0018 -8.9790 1.0721 23 1 0.3026 -7.7554 2.2950 24 6 2.5426 -3.4271 1.2085 25 6 1.7499 -2.1163 1.1925 26 1 -0.3634 -0.0594 1.0259 27 1 -0.3634 0.9182 -0.4615 28 1 -0.3634 -0.8587 -0.5644 29 1 3.9641 0.5284 -0.9041 30 1 3.8753 1.2635 2.0590 31 1 3.9116 -0.3854 1.3877 32 1 6.1091 0.0784 0.3488 33 1 6.1752 0.3490 2.1066 34 1 7.9291 3.2600 0.9059 35 1 7.9965 1.8293 1.9628 36 1 8.0944 1.6360 0.1961 37 1 6.0255 1.9634 -1.1535 38 1 6.0301 3.6184 -0.4989 39 1 3.7632 2.9586 -1.2773 40 1 3.7868 3.2448 0.4796 41 1 3.2666 -1.0706 0.0755 42 1 2.2074 -1.4090 -2.1508 43 1 0.8444 -2.2432 -1.3656 44 1 2.4283 -3.9194 -2.1892 45 1 3.7715 -3.1125 -1.3423 46 1 3.1272 -6.5451 2.6051 47 1 3.5966 -3.2146 1.3875 48 1 2.1613 -4.0751 1.9978 49 1 1.9335 -1.5688 2.1170 50 1 0.6857 -2.3352 1.1045 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005932651.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:44:56 Heat of formation + Delta-G solvation = -9.634178 kcal Electronic energy + Delta-G solvation = -27748.254779 eV Core-core repulsion = 24196.813224 eV Total energy + Delta-G solvation = -3551.441555 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.52601 -38.48987 -37.58929 -35.03600 -33.69199 -32.31181 -30.99628 -30.24464 -29.56590 -28.14709 -26.24643 -25.11102 -23.37345 -23.12047 -22.28300 -22.10697 -20.13771 -19.34881 -18.70239 -17.00840 -16.97248 -15.99691 -15.56148 -15.21662 -15.11100 -14.87697 -14.64940 -14.13273 -13.76309 -13.67179 -13.57110 -13.41355 -13.14460 -12.66921 -12.63852 -12.56066 -12.45141 -12.35550 -11.91185 -11.74391 -11.56860 -11.36290 -11.29523 -11.13431 -10.78414 -10.74393 -10.71259 -10.52744 -10.42273 -10.25842 -10.14203 -9.80302 -9.77467 -9.38010 -8.58716 -8.47879 -8.30735 -6.83044 -5.86331 -3.24653 2.77941 3.20560 3.33508 3.42050 3.43578 3.78740 4.43998 4.47413 4.66410 4.74689 5.00645 5.02516 5.11021 5.19418 5.28139 5.31895 5.36594 5.38061 5.41329 5.45485 5.50611 5.53062 5.60164 5.69225 5.69450 5.73771 5.75147 5.83058 5.91929 5.95775 5.97121 6.11451 6.16138 6.28423 6.31295 6.36309 6.49724 6.52243 6.65841 6.73222 6.85361 6.90883 6.93193 7.26848 7.54830 7.64317 7.73080 8.34367 8.35364 9.12859 9.77027 10.30380 11.22191 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.017268 B = 0.003921 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.086541 B = 7138.789004 C = 8142.799384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.607 5.607 3 C 0.519 3.481 4 O -0.552 6.552 5 C -0.107 4.107 6 C -0.115 4.115 7 C 0.057 3.943 8 N -0.545 5.545 9 C 0.025 3.975 10 C 0.056 3.944 11 C -0.095 4.095 12 C 0.133 3.867 13 C -0.143 4.143 14 C 0.148 3.852 15 N -0.592 5.592 16 C -0.251 4.251 17 H 0.068 0.932 18 C 0.000 4.000 19 N -0.903 5.903 20 Si 0.900 3.100 21 H -0.278 1.278 22 H -0.291 1.291 23 H -0.289 1.289 24 C 0.169 3.831 25 C -0.148 4.148 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.038 0.962 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.025 0.975 37 H 0.033 0.967 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.052 0.948 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.018 0.982 46 H 0.254 0.746 47 H 0.018 0.982 48 H 0.099 0.901 49 H 0.053 0.947 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.434 14.332 -3.218 15.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.338 5.338 3 C 0.307 3.693 4 O -0.431 6.431 5 C -0.129 4.129 6 C -0.153 4.153 7 C -0.070 4.070 8 N -0.270 5.270 9 C -0.123 4.123 10 C -0.072 4.072 11 C -0.133 4.133 12 C 0.031 3.969 13 C -0.183 4.183 14 C 0.021 3.979 15 N -0.315 5.315 16 C -0.380 4.380 17 H 0.086 0.914 18 C -0.198 4.198 19 N -0.548 5.548 20 Si 0.730 3.270 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.215 1.215 24 C 0.043 3.957 25 C -0.188 4.188 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.109 0.891 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.043 0.957 37 H 0.052 0.948 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.112 0.888 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.036 0.964 46 H 0.064 0.936 47 H 0.036 0.964 48 H 0.117 0.883 49 H 0.072 0.928 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.940 15.045 -2.681 15.782 hybrid contribution -0.183 -1.466 -0.527 1.569 sum 3.757 13.578 -3.208 14.449 Atomic orbital electron populations 1.21542 0.79918 1.02592 1.01626 1.48166 1.06924 1.06390 1.72348 1.20589 0.89850 0.83201 0.75671 1.90644 1.70439 1.31356 1.50621 1.21362 0.91910 0.99419 1.00162 1.21790 0.94744 1.02437 0.96324 1.22090 0.95399 0.88157 1.01391 1.61946 1.10755 1.21067 1.33198 1.22346 0.87202 1.01636 1.01126 1.22121 0.95421 1.00062 0.89602 1.21393 0.93695 0.95119 1.03091 1.21532 0.96426 0.81995 0.96946 1.22427 1.02023 0.98212 0.95657 1.20846 0.95301 0.90646 0.91114 1.44128 1.77407 1.10017 0.99952 1.19257 1.31402 0.86388 1.00952 0.91386 1.24919 0.98041 0.97770 0.99037 1.70031 1.33207 1.38350 1.13171 0.86250 0.80035 0.83006 0.77665 1.20302 1.21764 1.21534 1.20875 0.95537 0.89483 0.89840 1.22586 1.02010 0.98654 0.95525 0.92985 0.91098 0.91157 0.89117 0.90502 0.89557 0.94397 0.90109 0.91476 0.91295 0.95678 0.94833 0.90548 0.91173 0.90075 0.88836 0.92903 0.91768 0.92436 0.96368 0.93623 0.96363 0.88326 0.92846 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.20 9.39 59.85 0.56 1.76 16 2 N -0.61 -9.04 2.76 -173.88 -0.48 -9.52 16 3 C 0.52 7.97 6.97 -10.99 -0.08 7.89 16 4 O -0.55 -9.98 15.50 5.55 0.09 -9.89 16 5 C -0.11 -1.37 1.73 -91.65 -0.16 -1.53 16 6 C -0.12 -1.43 4.96 -26.65 -0.13 -1.56 16 7 C 0.06 0.65 5.46 -3.83 -0.02 0.62 16 8 N -0.54 -5.92 4.91 -242.97 -1.19 -7.12 16 9 C 0.03 0.22 9.59 60.07 0.58 0.80 16 10 C 0.06 0.57 5.46 -3.83 -0.02 0.55 16 11 C -0.09 -1.13 4.78 -26.65 -0.13 -1.25 16 12 C 0.13 2.06 1.65 -67.89 -0.11 1.95 16 13 C -0.14 -2.29 5.38 -26.61 -0.14 -2.43 16 14 C 0.15 2.84 6.51 -3.72 -0.02 2.82 16 15 N -0.59 -13.80 3.02 -172.29 -0.52 -14.32 16 16 C -0.25 -6.54 9.62 -15.06 -0.14 -6.69 16 17 H 0.07 1.75 7.87 -52.49 -0.41 1.34 16 18 C 0.00 0.01 4.91 -17.43 -0.09 -0.07 16 19 N -0.90 -25.03 11.02 55.49 0.61 -24.42 16 20 Si 0.90 20.99 29.60 -169.99 -5.03 15.95 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 C 0.17 3.72 5.36 -3.69 -0.02 3.70 16 25 C -0.15 -2.60 5.10 -26.61 -0.14 -2.74 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.99 7.38 -51.93 -0.38 0.60 16 28 H 0.07 0.93 6.69 -51.93 -0.35 0.58 16 29 H 0.09 1.11 7.48 -51.93 -0.39 0.73 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.09 1.14 5.44 -51.93 -0.28 0.86 16 32 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 36 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.69 8.12 -51.93 -0.42 0.27 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.08 1.09 7.91 -51.93 -0.41 0.68 16 41 H 0.09 1.40 4.04 -51.93 -0.21 1.19 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.06 1.07 6.89 -51.93 -0.36 0.71 16 44 H 0.06 1.09 7.91 -51.93 -0.41 0.68 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.25 6.82 8.31 -40.82 -0.34 6.49 16 47 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.10 2.49 5.79 -51.92 -0.30 2.19 16 49 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 50 H 0.06 1.12 7.63 -51.93 -0.40 0.72 16 LS Contribution 372.21 15.07 5.61 5.61 Total: -1.00 -29.33 372.21 -9.93 -39.26 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -8.95 Total: 0.64 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -0.06 Total: 3.81 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -1.58 Total: -55.38 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.33 -9.93 -39.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005932651.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.622 kcal (2) G-P(sol) polarization free energy of solvation -29.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds