Wall clock time and date at job start Tue Mar 31 2020 09:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34774 * 119.99813 * 2 1 4 4 O 1.21284 * 120.00216 * 3.61098 * 3 2 1 5 5 C 1.50703 * 119.99938 * 183.60983 * 3 2 1 6 6 C 1.53121 * 109.52237 * 289.44099 * 5 3 2 7 7 C 1.53033 * 109.27902 * 182.43835 * 6 5 3 8 8 N 1.46850 * 109.52292 * 59.18051 * 7 6 5 9 9 C 1.46901 * 111.00202 * 174.15946 * 8 7 6 10 10 C 1.46852 * 111.19654 * 298.25915 * 8 7 6 11 11 C 1.53033 * 109.52583 * 61.73931 * 10 8 7 12 12 C 1.46497 * 120.00193 * 180.02562 * 2 1 3 13 13 C 1.53041 * 109.46261 * 64.26593 * 12 2 1 14 14 C 1.53188 * 109.31392 * 178.61635 * 13 12 2 15 15 N 1.46920 * 108.89242 * 54.56728 * 14 13 12 16 16 C 1.36940 * 120.63135 * 126.46546 * 15 14 13 17 17 H 1.08000 * 119.99843 * 336.55755 * 16 15 14 18 18 C 1.38814 * 120.00259 * 156.55109 * 16 15 14 19 19 N 1.31622 * 119.99980 * 340.62116 * 18 16 15 20 20 Si 1.86793 * 120.00213 * 160.61928 * 18 16 15 21 21 H 1.48503 * 109.46881 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.47328 * 120.00318 * 20 18 16 23 23 H 1.48502 * 109.47093 * 240.00251 * 20 18 16 24 24 C 1.46964 * 118.71556 * 306.64092 * 15 14 13 25 25 C 1.53047 * 109.45699 * 304.20332 * 12 2 1 26 26 H 1.09001 * 109.47556 * 266.68476 * 1 2 3 27 27 H 1.09005 * 109.47573 * 26.68382 * 1 2 3 28 28 H 1.09000 * 109.47435 * 146.68313 * 1 2 3 29 29 H 1.08996 * 109.52372 * 49.62791 * 5 3 2 30 30 H 1.09002 * 109.50345 * 302.38146 * 6 5 3 31 31 H 1.08997 * 109.50187 * 62.49842 * 6 5 3 32 32 H 1.08992 * 109.46557 * 299.16687 * 7 6 5 33 33 H 1.09001 * 109.46204 * 179.19005 * 7 6 5 34 34 H 1.09001 * 109.46912 * 184.20798 * 9 8 7 35 35 H 1.09002 * 109.46641 * 304.21043 * 9 8 7 36 36 H 1.08997 * 109.46920 * 64.20676 * 9 8 7 37 37 H 1.08994 * 109.45901 * 301.72304 * 10 8 7 38 38 H 1.08997 * 109.45150 * 181.75408 * 10 8 7 39 39 H 1.08993 * 109.50603 * 180.87763 * 11 10 8 40 40 H 1.09003 * 109.53158 * 60.78423 * 11 10 8 41 41 H 1.08991 * 109.45201 * 184.24215 * 12 2 1 42 42 H 1.09002 * 109.49062 * 58.66492 * 13 12 2 43 43 H 1.08995 * 109.49977 * 298.57039 * 13 12 2 44 44 H 1.09002 * 109.59025 * 174.42698 * 14 13 12 45 45 H 1.09000 * 109.58580 * 294.70734 * 14 13 12 46 46 H 0.96994 * 120.00346 * 179.97438 * 19 18 16 47 47 H 1.09000 * 109.46528 * 293.57025 * 24 15 14 48 48 H 1.09008 * 109.71253 * 173.28660 * 24 15 14 49 49 H 1.08996 * 109.49518 * 301.33657 * 25 12 2 50 50 H 1.09004 * 109.49858 * 61.40143 * 25 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5342 2.2165 0.0662 5 6 3.6436 1.1685 -0.0822 6 6 4.2283 0.6460 1.2330 7 6 5.7560 0.7069 1.1662 8 7 6.1824 2.0932 0.9368 9 6 7.6450 2.2123 1.0048 10 6 5.6719 2.6008 -0.3432 11 6 4.1418 2.5965 -0.3215 12 6 2.1975 -1.2687 -0.0006 13 6 1.9099 -2.0230 -1.3008 14 6 2.7044 -3.3327 -1.3130 15 7 2.3910 -4.0906 -0.0940 16 6 1.9626 -5.3890 -0.1705 17 1 1.4947 -5.7509 -1.0741 18 6 2.1298 -6.2401 0.9133 19 7 3.0106 -5.9507 1.8476 20 14 1.1047 -7.7960 1.0459 21 1 0.1952 -7.8907 -0.1242 22 1 2.0018 -8.9790 1.0721 23 1 0.3026 -7.7554 2.2950 24 6 2.5426 -3.4271 1.2085 25 6 1.7499 -2.1163 1.1925 26 1 -0.3634 -0.0594 1.0259 27 1 -0.3634 0.9182 -0.4615 28 1 -0.3634 -0.8587 -0.5644 29 1 3.9641 0.5284 -0.9041 30 1 3.8753 1.2635 2.0590 31 1 3.9116 -0.3854 1.3877 32 1 6.1091 0.0784 0.3488 33 1 6.1752 0.3490 2.1066 34 1 7.9291 3.2600 0.9059 35 1 7.9965 1.8293 1.9628 36 1 8.0944 1.6360 0.1961 37 1 6.0255 1.9634 -1.1535 38 1 6.0301 3.6184 -0.4989 39 1 3.7632 2.9586 -1.2773 40 1 3.7868 3.2448 0.4796 41 1 3.2666 -1.0706 0.0755 42 1 2.2074 -1.4090 -2.1508 43 1 0.8444 -2.2432 -1.3656 44 1 2.4283 -3.9194 -2.1892 45 1 3.7715 -3.1125 -1.3423 46 1 3.1272 -6.5451 2.6051 47 1 3.5966 -3.2146 1.3875 48 1 2.1613 -4.0751 1.9978 49 1 1.9335 -1.5688 2.1170 50 1 0.6857 -2.3352 1.1045 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005932651.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:44:55 Heat of formation + Delta-G solvation = -26.875679 kcal Electronic energy + Delta-G solvation = -27749.002427 eV Core-core repulsion = 24196.813224 eV Total energy + Delta-G solvation = -3552.189202 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.70241 -39.55430 -38.97171 -36.57039 -34.62868 -34.06092 -31.96844 -31.75087 -31.22349 -29.16364 -27.34510 -26.75368 -24.41186 -24.10466 -23.79993 -23.55913 -21.16000 -20.81883 -19.90635 -18.74798 -18.19397 -17.19556 -16.84167 -16.57411 -16.21617 -16.02623 -15.74180 -15.46416 -15.31435 -15.00101 -14.79682 -14.63667 -14.48673 -14.17364 -13.95978 -13.65808 -13.40192 -13.34030 -13.14412 -13.07149 -12.96936 -12.61245 -12.56416 -12.43531 -12.28100 -12.18868 -12.00304 -11.88595 -11.80412 -11.69115 -11.46871 -11.44779 -11.30391 -10.65938 -10.51209 -9.62638 -9.27063 -8.72779 -7.85883 -5.25277 1.47250 1.51120 1.56343 1.59694 2.00604 2.53354 2.99413 3.28634 3.38276 3.68307 3.72876 3.77219 3.79970 4.02845 4.12694 4.16992 4.26428 4.35008 4.44118 4.45164 4.47832 4.56010 4.57196 4.58603 4.68410 4.71436 4.73890 4.74931 4.85875 4.90480 4.91553 4.94687 4.97527 5.06288 5.07865 5.08241 5.13260 5.21649 5.31731 5.34446 5.45882 5.60384 5.67122 5.79035 6.10979 6.15113 6.37813 6.41248 7.13090 7.16906 7.89111 8.37142 9.20627 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.017268 B = 0.003921 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.086541 B = 7138.789004 C = 8142.799384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.605 5.605 3 C 0.517 3.483 4 O -0.580 6.580 5 C -0.103 4.103 6 C -0.109 4.109 7 C 0.060 3.940 8 N -0.559 5.559 9 C 0.025 3.975 10 C 0.059 3.941 11 C -0.090 4.090 12 C 0.145 3.855 13 C -0.131 4.131 14 C 0.145 3.855 15 N -0.610 5.610 16 C -0.257 4.257 17 H 0.068 0.932 18 C -0.049 4.049 19 N -0.932 5.932 20 Si 0.959 3.041 21 H -0.269 1.269 22 H -0.295 1.295 23 H -0.292 1.292 24 C 0.177 3.823 25 C -0.133 4.133 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.040 0.960 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.029 0.971 37 H 0.041 0.959 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.103 0.897 42 H 0.079 0.921 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.024 0.976 46 H 0.249 0.751 47 H 0.006 0.994 48 H 0.063 0.937 49 H 0.062 0.938 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.789 15.233 -4.388 16.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.335 5.335 3 C 0.307 3.693 4 O -0.461 6.461 5 C -0.124 4.124 6 C -0.147 4.147 7 C -0.068 4.068 8 N -0.284 5.284 9 C -0.123 4.123 10 C -0.068 4.068 11 C -0.128 4.128 12 C 0.042 3.958 13 C -0.170 4.170 14 C 0.019 3.981 15 N -0.333 5.333 16 C -0.387 4.387 17 H 0.086 0.914 18 C -0.244 4.244 19 N -0.578 5.578 20 Si 0.788 3.212 21 H -0.193 1.193 22 H -0.222 1.222 23 H -0.219 1.219 24 C 0.051 3.949 25 C -0.172 4.172 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.047 0.953 37 H 0.059 0.941 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.121 0.879 42 H 0.097 0.903 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.042 0.958 46 H 0.058 0.942 47 H 0.024 0.976 48 H 0.081 0.919 49 H 0.081 0.919 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.290 15.962 -3.877 16.977 hybrid contribution -0.286 -1.711 -0.180 1.744 sum 4.005 14.251 -4.057 15.349 Atomic orbital electron populations 1.21614 0.79368 1.02980 1.01905 1.48135 1.07348 1.06007 1.72048 1.21023 0.90839 0.82665 0.74792 1.90634 1.71249 1.32247 1.51923 1.21391 0.90013 1.00399 1.00632 1.21699 0.95794 1.01450 0.95733 1.22041 0.94298 0.88720 1.01720 1.61945 1.12149 1.20614 1.33662 1.22393 0.85828 1.02531 1.01512 1.22110 0.94035 1.01077 0.89601 1.21340 0.94986 0.93994 1.02480 1.21329 0.96928 0.81834 0.95665 1.22267 1.01222 0.96811 0.96745 1.20992 0.96096 0.91607 0.89408 1.44364 1.77694 1.09711 1.01537 1.19551 1.30694 0.87626 1.00806 0.91388 1.25566 0.99175 1.00534 0.99152 1.70165 1.34702 1.39336 1.13644 0.85335 0.78585 0.79795 0.77513 1.19310 1.22191 1.21940 1.20630 0.95134 0.90563 0.88588 1.22334 1.00757 0.96922 0.97235 0.92877 0.91085 0.90303 0.87957 0.91675 0.90461 0.94181 0.89775 0.90336 0.90953 0.95253 0.94071 0.89140 0.90853 0.91970 0.87908 0.90281 0.92142 0.92383 0.95787 0.94169 0.97631 0.91911 0.91892 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.20 9.39 127.77 1.20 3.40 16 2 N -0.60 -16.94 2.76 -822.44 -2.27 -19.21 16 3 C 0.52 15.11 6.97 87.66 0.61 15.72 16 4 O -0.58 -20.39 15.50 -3.04 -0.05 -20.44 16 5 C -0.10 -2.45 1.73 -11.46 -0.02 -2.47 16 6 C -0.11 -2.57 4.96 30.65 0.15 -2.41 16 7 C 0.06 1.25 5.46 86.32 0.47 1.72 16 8 N -0.56 -11.03 4.91 -922.60 -4.53 -15.56 16 9 C 0.03 0.38 9.59 127.69 1.22 1.61 16 10 C 0.06 1.08 5.46 86.32 0.47 1.55 16 11 C -0.09 -1.98 4.78 30.64 0.15 -1.84 16 12 C 0.15 4.22 1.65 45.02 0.07 4.29 16 13 C -0.13 -3.86 5.38 30.67 0.17 -3.69 16 14 C 0.14 5.33 6.51 86.36 0.56 5.89 16 15 N -0.61 -28.21 3.02 -699.01 -2.11 -30.32 16 16 C -0.26 -13.38 9.62 84.03 0.81 -12.57 16 17 H 0.07 3.47 7.87 -2.91 -0.02 3.45 16 18 C -0.05 -2.63 4.91 84.86 0.42 -2.21 16 19 N -0.93 -52.68 11.02 21.65 0.24 -52.44 16 20 Si 0.96 43.46 29.60 68.60 2.03 45.49 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 22 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 23 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 24 C 0.18 7.85 5.36 86.35 0.46 8.31 16 25 C -0.13 -4.57 5.10 30.67 0.16 -4.42 16 26 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.07 1.88 7.38 -2.38 -0.02 1.86 16 28 H 0.08 1.93 6.69 -2.39 -0.02 1.91 16 29 H 0.10 2.22 7.48 -2.39 -0.02 2.21 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.08 1.95 5.44 -2.39 -0.01 1.94 16 32 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 1.68 8.09 -2.39 -0.02 1.67 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 1.05 8.09 -2.39 -0.02 1.03 16 36 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.09 1.40 8.12 -2.39 -0.02 1.38 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.06 1.62 7.91 -2.39 -0.02 1.60 16 41 H 0.10 2.87 4.04 -2.39 -0.01 2.86 16 42 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.06 1.86 6.89 -2.39 -0.02 1.85 16 44 H 0.06 2.11 7.91 -2.39 -0.02 2.09 16 45 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 47 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 48 H 0.06 3.26 5.79 -2.38 -0.01 3.24 16 49 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 50 H 0.05 1.97 7.63 -2.38 -0.02 1.95 16 Total: -1.00 -62.47 372.21 1.11 -61.37 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.89 Total: 18.22 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 6.90 Total: 12.88 kcal Atomic # 7 Polarization: -108.86 SS G_CDS: -8.67 Total: -117.53 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.05 Total: -20.44 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -62.47 1.11 -61.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005932651.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.491 kcal (2) G-P(sol) polarization free energy of solvation -62.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds