Wall clock time and date at job start Tue Mar 31 2020 09:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47045 * 2 1 4 4 N 1.46906 * 109.47368 * 119.99815 * 2 1 3 5 5 C 1.46850 * 110.99418 * 308.18941 * 4 2 1 6 6 C 1.53042 * 109.50990 * 185.83390 * 5 4 2 7 7 C 1.53124 * 109.27723 * 300.82464 * 6 5 4 8 8 C 1.53112 * 109.15975 * 57.65470 * 7 6 5 9 9 C 1.46824 * 110.98625 * 72.39701 * 4 2 1 10 10 H 1.08998 * 109.46301 * 294.17093 * 9 4 2 11 11 C 1.50708 * 109.46144 * 54.14615 * 9 4 2 12 12 O 1.21280 * 120.00008 * 29.15382 * 11 9 4 13 13 N 1.34773 * 119.99725 * 209.15467 * 11 9 4 14 14 C 1.46501 * 119.99816 * 180.02562 * 13 11 9 15 15 H 1.08998 * 112.85046 * 23.80630 * 14 13 11 16 16 C 1.53783 * 113.61614 * 155.00001 * 14 13 11 17 17 C 1.53777 * 87.08226 * 139.98258 * 16 14 13 18 18 H 1.08999 * 113.61155 * 219.93508 * 17 16 14 19 19 N 1.46495 * 113.61470 * 89.11679 * 17 16 14 20 20 C 1.36938 * 119.99847 * 154.99926 * 19 17 16 21 21 H 1.08003 * 120.00363 * 0.02562 * 20 19 17 22 22 C 1.38816 * 119.99917 * 179.97438 * 20 19 17 23 23 N 1.31616 * 119.99985 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99971 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47071 * 90.00199 * 24 22 20 26 26 H 1.48498 * 109.46860 * 210.00504 * 24 22 20 27 27 H 1.48503 * 109.46934 * 329.99895 * 24 22 20 28 28 C 1.53777 * 113.61568 * 252.49877 * 14 13 11 29 29 H 1.09003 * 109.47052 * 300.00082 * 1 2 3 30 30 H 1.08998 * 109.47180 * 60.00515 * 1 2 3 31 31 H 1.09002 * 109.46766 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47495 * 239.99363 * 2 1 3 33 33 H 1.09000 * 109.47141 * 184.17895 * 3 2 1 34 34 H 1.08999 * 109.47069 * 304.17616 * 3 2 1 35 35 H 1.08995 * 109.47445 * 64.17707 * 3 2 1 36 36 H 1.08996 * 109.46444 * 65.82582 * 5 4 2 37 37 H 1.08997 * 109.46528 * 305.83987 * 5 4 2 38 38 H 1.08992 * 109.50405 * 60.76529 * 6 5 4 39 39 H 1.09000 * 109.50017 * 180.84820 * 6 5 4 40 40 H 1.08996 * 109.52270 * 177.56374 * 7 6 5 41 41 H 1.09001 * 109.52320 * 297.75131 * 7 6 5 42 42 H 1.09006 * 109.50333 * 62.28889 * 8 7 6 43 43 H 1.09001 * 109.50293 * 182.40081 * 8 7 6 44 44 H 0.97002 * 120.00345 * 359.97438 * 13 11 9 45 45 H 1.09005 * 113.61389 * 254.53282 * 16 14 13 46 46 H 1.09000 * 113.61299 * 25.34738 * 16 14 13 47 47 H 0.96995 * 120.00414 * 334.99919 * 19 17 16 48 48 H 0.97000 * 119.99986 * 179.97438 * 23 22 20 49 49 H 1.09003 * 113.61462 * 334.56664 * 28 14 13 50 50 H 1.09001 * 113.61751 * 105.47229 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.3960 -0.1485 2.4126 6 6 2.0339 -0.7900 3.6470 7 6 1.8383 -2.3075 3.5861 8 6 2.4542 -2.8420 2.2902 9 6 1.8042 -2.1411 1.0952 10 1 0.7343 -2.3496 1.0898 11 6 2.4214 -2.6499 -0.1820 12 8 3.3861 -2.0876 -0.6554 13 7 1.9013 -3.7299 -0.7982 14 6 2.5016 -4.2249 -2.0395 15 1 3.5475 -3.9376 -2.1477 16 6 2.2436 -5.7191 -2.2955 17 6 2.0423 -5.3503 -3.7747 18 1 1.2258 -5.8917 -4.2524 19 7 3.2789 -5.3774 -4.5598 20 6 3.2266 -5.5826 -5.9127 21 1 2.2738 -5.7241 -6.4011 22 6 4.3983 -5.6077 -6.6567 23 7 5.5595 -5.4347 -6.0616 24 14 4.3270 -5.8869 -8.5023 25 1 4.2075 -4.5795 -9.1964 26 1 5.5668 -6.5723 -8.9475 27 1 3.1499 -6.7309 -8.8301 28 6 1.6513 -3.9444 -3.2896 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1274 1.4434 -0.0749 34 1 1.6168 1.9774 -0.8502 35 1 1.7391 1.9343 0.9250 36 1 0.3281 -0.3665 2.4009 37 1 1.5461 0.9306 2.4456 38 1 3.0993 -0.5609 3.6666 39 1 1.5604 -0.3973 4.5468 40 1 2.3286 -2.7725 4.4414 41 1 0.7733 -2.5386 3.6057 42 1 3.5263 -2.6452 2.2886 43 1 2.2807 -3.9159 2.2207 44 1 1.1300 -4.1798 -0.4194 45 1 3.1148 -6.3495 -2.1172 46 1 1.3425 -6.0958 -1.8115 47 1 4.1346 -5.2499 -4.1213 48 1 6.3783 -5.4526 -6.5814 49 1 0.5874 -3.8355 -3.0786 50 1 2.0442 -3.1421 -3.9141 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020675820.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:37:47 Heat of formation + Delta-G solvation = -5.909577 kcal Electronic energy + Delta-G solvation = -26848.245798 eV Core-core repulsion = 23296.965754 eV Total energy + Delta-G solvation = -3551.280044 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.66694 -39.00651 -37.51395 -35.36769 -33.96923 -32.68120 -31.36010 -30.43976 -29.62912 -27.35411 -25.37606 -25.09872 -24.36911 -23.80465 -22.50726 -20.78638 -20.53601 -19.46182 -18.59614 -17.37751 -17.06133 -16.50539 -15.72183 -15.35673 -14.98131 -14.75083 -14.57388 -14.35594 -13.94694 -13.88295 -13.75065 -13.47730 -13.15385 -12.98846 -12.75564 -12.59805 -12.22695 -12.05371 -11.94902 -11.91997 -11.65478 -11.56072 -11.31984 -11.23690 -10.96282 -10.87526 -10.78433 -10.71342 -10.47586 -10.22158 -10.15410 -9.83582 -9.70261 -9.34374 -8.90400 -8.65025 -8.39516 -6.99725 -5.78198 -3.08341 2.76681 3.19475 3.43760 3.48440 3.50467 3.75322 4.50317 4.55440 4.56939 4.64931 4.78099 4.91135 4.95691 4.99734 5.00440 5.12166 5.16146 5.25561 5.27309 5.38077 5.40929 5.43748 5.48624 5.49893 5.54618 5.62408 5.69842 5.74134 5.80250 5.87072 5.88606 5.89698 6.00617 6.08621 6.09432 6.11425 6.23055 6.24512 6.39069 6.63583 6.73824 6.80223 6.88268 6.97303 7.06254 7.69447 7.73504 8.39897 8.45065 9.50641 10.07092 10.41076 11.43956 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.022589 B = 0.002883 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.255610 B = 9709.199431 C =10175.130320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.068 3.932 3 C -0.138 4.138 4 N -0.508 5.508 5 C 0.052 3.948 6 C -0.119 4.119 7 C -0.118 4.118 8 C -0.107 4.107 9 C 0.071 3.929 10 H 0.056 0.944 11 C 0.512 3.488 12 O -0.517 6.517 13 N -0.719 5.719 14 C 0.127 3.873 15 H 0.113 0.887 16 C -0.165 4.165 17 C 0.172 3.828 18 H 0.067 0.933 19 N -0.705 5.705 20 C -0.246 4.246 21 H 0.072 0.928 22 C -0.011 4.011 23 N -0.930 5.930 24 Si 0.909 3.091 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 C -0.184 4.184 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.036 0.964 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.394 0.606 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.386 0.614 48 H 0.257 0.743 49 H 0.067 0.933 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.753 8.521 21.238 26.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.040 4.040 3 C -0.195 4.195 4 N -0.232 5.232 5 C -0.076 4.076 6 C -0.157 4.157 7 C -0.156 4.156 8 C -0.145 4.145 9 C -0.041 4.041 10 H 0.074 0.926 11 C 0.297 3.703 12 O -0.391 6.391 13 N -0.370 5.370 14 C 0.023 3.977 15 H 0.131 0.869 16 C -0.205 4.205 17 C 0.059 3.941 18 H 0.086 0.914 19 N -0.344 5.344 20 C -0.377 4.377 21 H 0.090 0.910 22 C -0.208 4.208 23 N -0.577 5.577 24 Si 0.740 3.260 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.207 1.207 28 C -0.226 4.226 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.113 0.887 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.227 0.773 45 H 0.091 0.909 46 H 0.096 0.904 47 H 0.220 0.780 48 H 0.066 0.934 49 H 0.086 0.914 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.519 8.965 20.706 25.334 hybrid contribution -1.047 -0.409 -0.727 1.339 sum -12.566 8.556 19.979 25.105 Atomic orbital electron populations 1.22504 0.97878 1.01707 1.02406 1.21863 0.92105 0.96197 0.93874 1.21765 1.02294 0.94377 1.01078 1.61888 1.58191 1.00963 1.02201 1.22185 0.96056 0.99803 0.89534 1.21623 1.02137 0.95159 0.96779 1.21564 1.00627 0.96027 0.97345 1.21535 1.01665 0.98882 0.92434 1.21597 0.98271 0.90028 0.94209 0.92648 1.20402 0.84261 0.80625 0.85055 1.90739 1.26162 1.56619 1.65591 1.46191 1.33679 1.30630 1.26531 1.22614 0.98977 0.94309 0.81801 0.86919 1.23896 1.01687 0.95156 0.99712 1.20901 0.91010 0.92976 0.89242 0.91446 1.42196 1.02398 1.84852 1.04940 1.19264 0.92949 1.41844 0.83609 0.90959 1.24786 0.95295 1.02470 0.98204 1.69667 0.96931 1.56263 1.34845 0.86168 0.76819 0.77706 0.85340 1.21640 1.21730 1.20701 1.24309 0.98306 1.02790 0.97208 0.92332 0.91867 0.92984 0.88727 0.91593 0.92410 0.92939 0.94590 0.90166 0.90856 0.91562 0.91364 0.92189 0.90172 0.91065 0.77314 0.90895 0.90413 0.77957 0.93353 0.91425 0.91107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.78 8.41 37.16 0.31 -1.47 16 2 C 0.07 0.80 2.55 -67.71 -0.17 0.62 16 3 C -0.14 -1.46 9.26 37.16 0.34 -1.12 16 4 N -0.51 -5.78 4.18 -220.15 -0.92 -6.70 16 5 C 0.05 0.45 4.48 -3.83 -0.02 0.43 16 6 C -0.12 -0.91 6.09 -26.65 -0.16 -1.07 16 7 C -0.12 -0.88 6.00 -26.61 -0.16 -1.04 16 8 C -0.11 -1.03 5.35 -26.66 -0.14 -1.17 16 9 C 0.07 0.79 1.95 -68.89 -0.13 0.65 16 10 H 0.06 0.53 6.96 -51.93 -0.36 0.17 16 11 C 0.51 7.48 5.74 -10.98 -0.06 7.41 16 12 O -0.52 -9.99 14.93 5.56 0.08 -9.91 16 13 N -0.72 -9.51 5.35 -53.02 -0.28 -9.79 16 14 C 0.13 2.10 4.12 -67.12 -0.28 1.83 16 15 H 0.11 2.29 7.46 -51.93 -0.39 1.90 16 16 C -0.16 -2.60 7.58 -25.92 -0.20 -2.80 16 17 C 0.17 3.36 4.56 -67.12 -0.31 3.06 16 18 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 19 N -0.71 -17.77 5.31 -52.64 -0.28 -18.04 16 20 C -0.25 -6.83 9.97 -15.06 -0.15 -6.98 16 21 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 22 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 23 N -0.93 -28.38 13.06 55.49 0.72 -27.65 16 24 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 28 C -0.18 -3.24 7.68 -25.92 -0.20 -3.44 16 29 H 0.06 0.49 6.45 -51.93 -0.33 0.15 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.50 6.91 -51.93 -0.36 0.14 16 32 H 0.09 1.44 5.72 -51.93 -0.30 1.14 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.47 6.35 -51.93 -0.33 0.14 16 36 H 0.04 0.29 6.57 -51.93 -0.34 -0.05 16 37 H 0.08 0.66 6.25 -51.93 -0.32 0.34 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.39 3.92 8.73 -40.82 -0.36 3.56 16 45 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 46 H 0.08 0.98 8.12 -51.93 -0.42 0.56 16 47 H 0.39 10.43 7.90 -40.82 -0.32 10.11 16 48 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 49 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 50 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 LS Contribution 382.29 15.07 5.76 5.76 Total: -1.00 -32.27 382.29 -10.23 -42.50 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: -8.87 Total: 11.89 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -1.42 Total: -5.49 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: -0.76 Total: -62.19 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.91 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.27 -10.23 -42.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020675820.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.589 kcal (2) G-P(sol) polarization free energy of solvation -32.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds