Wall clock time and date at job start Tue Mar 31 2020 09:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47045 * 2 1 4 4 N 1.46906 * 109.47368 * 119.99815 * 2 1 3 5 5 C 1.46850 * 110.99418 * 308.18941 * 4 2 1 6 6 C 1.53042 * 109.50990 * 185.83390 * 5 4 2 7 7 C 1.53124 * 109.27723 * 300.82464 * 6 5 4 8 8 C 1.53112 * 109.15975 * 57.65470 * 7 6 5 9 9 C 1.46824 * 110.98625 * 72.39701 * 4 2 1 10 10 H 1.08998 * 109.46301 * 294.17093 * 9 4 2 11 11 C 1.50708 * 109.46144 * 54.14615 * 9 4 2 12 12 O 1.21280 * 120.00008 * 29.15382 * 11 9 4 13 13 N 1.34773 * 119.99725 * 209.15467 * 11 9 4 14 14 C 1.46501 * 119.99816 * 180.02562 * 13 11 9 15 15 H 1.08998 * 112.85046 * 23.80630 * 14 13 11 16 16 C 1.53783 * 113.61614 * 155.00001 * 14 13 11 17 17 C 1.53777 * 87.08226 * 139.98258 * 16 14 13 18 18 H 1.08999 * 113.61155 * 219.93508 * 17 16 14 19 19 N 1.46495 * 113.61470 * 89.11679 * 17 16 14 20 20 C 1.36938 * 119.99847 * 154.99926 * 19 17 16 21 21 H 1.08003 * 120.00363 * 0.02562 * 20 19 17 22 22 C 1.38816 * 119.99917 * 179.97438 * 20 19 17 23 23 N 1.31616 * 119.99985 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99971 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47071 * 90.00199 * 24 22 20 26 26 H 1.48498 * 109.46860 * 210.00504 * 24 22 20 27 27 H 1.48503 * 109.46934 * 329.99895 * 24 22 20 28 28 C 1.53777 * 113.61568 * 252.49877 * 14 13 11 29 29 H 1.09003 * 109.47052 * 300.00082 * 1 2 3 30 30 H 1.08998 * 109.47180 * 60.00515 * 1 2 3 31 31 H 1.09002 * 109.46766 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47495 * 239.99363 * 2 1 3 33 33 H 1.09000 * 109.47141 * 184.17895 * 3 2 1 34 34 H 1.08999 * 109.47069 * 304.17616 * 3 2 1 35 35 H 1.08995 * 109.47445 * 64.17707 * 3 2 1 36 36 H 1.08996 * 109.46444 * 65.82582 * 5 4 2 37 37 H 1.08997 * 109.46528 * 305.83987 * 5 4 2 38 38 H 1.08992 * 109.50405 * 60.76529 * 6 5 4 39 39 H 1.09000 * 109.50017 * 180.84820 * 6 5 4 40 40 H 1.08996 * 109.52270 * 177.56374 * 7 6 5 41 41 H 1.09001 * 109.52320 * 297.75131 * 7 6 5 42 42 H 1.09006 * 109.50333 * 62.28889 * 8 7 6 43 43 H 1.09001 * 109.50293 * 182.40081 * 8 7 6 44 44 H 0.97002 * 120.00345 * 359.97438 * 13 11 9 45 45 H 1.09005 * 113.61389 * 254.53282 * 16 14 13 46 46 H 1.09000 * 113.61299 * 25.34738 * 16 14 13 47 47 H 0.96995 * 120.00414 * 334.99919 * 19 17 16 48 48 H 0.97000 * 119.99986 * 179.97438 * 23 22 20 49 49 H 1.09003 * 113.61462 * 334.56664 * 28 14 13 50 50 H 1.09001 * 113.61751 * 105.47229 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.3960 -0.1485 2.4126 6 6 2.0339 -0.7900 3.6470 7 6 1.8383 -2.3075 3.5861 8 6 2.4542 -2.8420 2.2902 9 6 1.8042 -2.1411 1.0952 10 1 0.7343 -2.3496 1.0898 11 6 2.4214 -2.6499 -0.1820 12 8 3.3861 -2.0876 -0.6554 13 7 1.9013 -3.7299 -0.7982 14 6 2.5016 -4.2249 -2.0395 15 1 3.5475 -3.9376 -2.1477 16 6 2.2436 -5.7191 -2.2955 17 6 2.0423 -5.3503 -3.7747 18 1 1.2258 -5.8917 -4.2524 19 7 3.2789 -5.3774 -4.5598 20 6 3.2266 -5.5826 -5.9127 21 1 2.2738 -5.7241 -6.4011 22 6 4.3983 -5.6077 -6.6567 23 7 5.5595 -5.4347 -6.0616 24 14 4.3270 -5.8869 -8.5023 25 1 4.2075 -4.5795 -9.1964 26 1 5.5668 -6.5723 -8.9475 27 1 3.1499 -6.7309 -8.8301 28 6 1.6513 -3.9444 -3.2896 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1274 1.4434 -0.0749 34 1 1.6168 1.9774 -0.8502 35 1 1.7391 1.9343 0.9250 36 1 0.3281 -0.3665 2.4009 37 1 1.5461 0.9306 2.4456 38 1 3.0993 -0.5609 3.6666 39 1 1.5604 -0.3973 4.5468 40 1 2.3286 -2.7725 4.4414 41 1 0.7733 -2.5386 3.6057 42 1 3.5263 -2.6452 2.2886 43 1 2.2807 -3.9159 2.2207 44 1 1.1300 -4.1798 -0.4194 45 1 3.1148 -6.3495 -2.1172 46 1 1.3425 -6.0958 -1.8115 47 1 4.1346 -5.2499 -4.1213 48 1 6.3783 -5.4526 -6.5814 49 1 0.5874 -3.8355 -3.0786 50 1 2.0442 -3.1421 -3.9141 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020675820.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:37:46 Heat of formation + Delta-G solvation = -29.027497 kcal Electronic energy + Delta-G solvation = -26849.248266 eV Core-core repulsion = 23296.965754 eV Total energy + Delta-G solvation = -3552.282512 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.69830 -40.24790 -38.78201 -36.13489 -35.69757 -34.26529 -32.34779 -31.48000 -31.18354 -28.14765 -26.68507 -26.51692 -25.62444 -24.99520 -23.90963 -21.70994 -21.49897 -20.52895 -19.86434 -19.36319 -18.14443 -17.64789 -16.88591 -16.63508 -16.36673 -15.92778 -15.62803 -15.41232 -15.24590 -15.06076 -14.73409 -14.60312 -14.35149 -14.25900 -13.84172 -13.62738 -13.46651 -13.30740 -13.27132 -12.93462 -12.81446 -12.69689 -12.61699 -12.39997 -12.18371 -12.10530 -11.99062 -11.82739 -11.73524 -11.59094 -11.53164 -11.31267 -11.17211 -10.91102 -10.52468 -9.96008 -9.17884 -9.04661 -7.96850 -5.26951 1.45951 1.48534 1.56844 1.62115 2.12399 2.54230 2.89429 3.34987 3.61836 3.67526 3.80691 3.84701 3.87904 3.91753 4.03117 4.08396 4.16738 4.28666 4.29278 4.29813 4.35695 4.35999 4.57094 4.65954 4.73801 4.78662 4.79670 4.80836 4.81374 4.91152 4.97513 4.99355 5.03973 5.11398 5.14153 5.19781 5.22837 5.24601 5.27878 5.31525 5.36916 5.49741 5.50008 5.69098 6.05058 6.21578 6.25471 6.66027 7.29787 7.34567 8.06050 8.27333 9.26739 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.022589 B = 0.002883 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.255610 B = 9709.199431 C =10175.130320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.067 3.933 3 C -0.134 4.134 4 N -0.529 5.529 5 C 0.051 3.949 6 C -0.118 4.118 7 C -0.112 4.112 8 C -0.106 4.106 9 C 0.079 3.921 10 H 0.083 0.917 11 C 0.508 3.492 12 O -0.574 6.574 13 N -0.702 5.702 14 C 0.134 3.866 15 H 0.065 0.935 16 C -0.137 4.137 17 C 0.151 3.849 18 H 0.079 0.921 19 N -0.724 5.724 20 C -0.244 4.244 21 H 0.083 0.917 22 C -0.079 4.079 23 N -0.972 5.972 24 Si 0.977 3.023 25 H -0.290 1.290 26 H -0.296 1.296 27 H -0.263 1.263 28 C -0.169 4.169 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.040 0.960 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.083 0.917 38 H 0.055 0.945 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.051 0.949 43 H 0.085 0.915 44 H 0.416 0.584 45 H 0.060 0.940 46 H 0.127 0.873 47 H 0.371 0.629 48 H 0.251 0.749 49 H 0.105 0.895 50 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.452 8.053 23.263 29.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.041 4.041 3 C -0.192 4.192 4 N -0.255 5.255 5 C -0.075 4.075 6 C -0.156 4.156 7 C -0.149 4.149 8 C -0.145 4.145 9 C -0.032 4.032 10 H 0.100 0.900 11 C 0.295 3.705 12 O -0.452 6.452 13 N -0.355 5.355 14 C 0.028 3.972 15 H 0.084 0.916 16 C -0.177 4.177 17 C 0.040 3.960 18 H 0.097 0.903 19 N -0.361 5.361 20 C -0.375 4.375 21 H 0.101 0.899 22 C -0.271 4.271 23 N -0.623 5.623 24 Si 0.805 3.195 25 H -0.217 1.217 26 H -0.223 1.223 27 H -0.188 1.188 28 C -0.211 4.211 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.069 0.931 43 H 0.103 0.897 44 H 0.253 0.747 45 H 0.079 0.921 46 H 0.145 0.855 47 H 0.203 0.797 48 H 0.060 0.940 49 H 0.123 0.877 50 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -15.320 8.476 22.778 28.729 hybrid contribution 0.065 -0.217 -1.297 1.317 sum -15.254 8.259 21.481 27.610 Atomic orbital electron populations 1.22416 0.95701 1.02171 1.03331 1.21741 0.93758 0.96012 0.92634 1.21733 1.00652 0.94353 1.02419 1.61853 1.59507 1.01156 1.02997 1.22285 0.96778 0.99995 0.88480 1.21642 1.01227 0.95518 0.97230 1.21554 1.01625 0.95636 0.96104 1.21569 0.99999 0.99736 0.93147 1.21594 0.99276 0.90071 0.92280 0.89978 1.21187 0.83438 0.80005 0.85853 1.90721 1.28867 1.58306 1.67272 1.45935 1.33975 1.30348 1.25198 1.22129 0.96658 0.95260 0.83139 0.91631 1.23737 1.03313 0.94010 0.96619 1.21244 0.89238 0.94494 0.91008 0.90304 1.42408 1.03735 1.85255 1.04745 1.19720 0.93185 1.39632 0.84996 0.89947 1.25659 0.95094 1.03588 1.02797 1.69844 0.97445 1.58647 1.36323 0.85093 0.76999 0.77499 0.79888 1.21704 1.22276 1.18793 1.24165 1.00316 0.99953 0.96716 0.90427 0.91890 0.92680 0.92975 0.94098 0.91811 0.90875 0.92984 0.89851 0.92641 0.89203 0.90256 0.90267 0.93060 0.89669 0.74690 0.92145 0.85521 0.79750 0.94044 0.87695 0.94996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.99 8.41 71.98 0.61 -2.38 16 2 C 0.07 1.56 2.55 44.91 0.11 1.67 16 3 C -0.13 -2.86 9.26 71.98 0.67 -2.19 16 4 N -0.53 -11.60 4.18 -850.44 -3.56 -15.16 16 5 C 0.05 0.76 4.48 86.33 0.39 1.14 16 6 C -0.12 -1.49 6.09 30.65 0.19 -1.31 16 7 C -0.11 -1.29 6.00 30.67 0.18 -1.11 16 8 C -0.11 -1.85 5.35 30.64 0.16 -1.69 16 9 C 0.08 1.63 1.95 44.20 0.09 1.72 16 10 H 0.08 1.26 6.96 -2.39 -0.02 1.24 16 11 C 0.51 14.94 5.74 87.66 0.50 15.44 16 12 O -0.57 -23.67 14.93 -3.03 -0.05 -23.72 16 13 N -0.70 -17.67 5.35 -440.04 -2.36 -20.03 16 14 C 0.13 4.45 4.12 45.52 0.19 4.64 16 15 H 0.07 2.87 7.46 -2.39 -0.02 2.85 16 16 C -0.14 -4.10 7.58 31.12 0.24 -3.86 16 17 C 0.15 5.80 4.56 45.52 0.21 6.01 16 18 H 0.08 2.85 8.10 -2.39 -0.02 2.84 16 19 N -0.72 -37.48 5.31 -320.45 -1.70 -39.18 16 20 C -0.24 -13.74 9.97 84.03 0.84 -12.90 16 21 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 22 C -0.08 -4.67 5.50 84.86 0.47 -4.21 16 23 N -0.97 -61.71 13.06 21.65 0.28 -61.42 16 24 Si 0.98 47.00 29.55 68.60 2.03 49.03 16 25 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 26 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 27 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 28 C -0.17 -5.91 7.68 31.12 0.24 -5.67 16 29 H 0.08 1.02 6.45 -2.39 -0.02 1.00 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.05 0.88 6.91 -2.39 -0.02 0.87 16 32 H 0.05 1.66 5.72 -2.39 -0.01 1.65 16 33 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.07 1.22 6.35 -2.39 -0.02 1.21 16 36 H 0.05 0.62 6.57 -2.39 -0.02 0.60 16 37 H 0.08 1.17 6.25 -2.39 -0.01 1.15 16 38 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 43 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.42 6.80 8.73 -92.71 -0.81 5.99 16 45 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 46 H 0.13 2.59 8.12 -2.39 -0.02 2.57 16 47 H 0.37 21.12 7.90 -92.71 -0.73 20.38 16 48 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 49 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 50 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -75.89 382.29 -0.89 -76.78 By element: Atomic # 1 Polarization: 39.00 SS G_CDS: -0.61 Total: 38.39 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: 5.07 Total: -4.70 kcal Atomic # 7 Polarization: -128.45 SS G_CDS: -7.33 Total: -135.79 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.05 Total: -23.72 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -75.89 -0.89 -76.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020675820.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.757 kcal (2) G-P(sol) polarization free energy of solvation -75.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds