Wall clock time and date at job start Tue Mar 31 2020 09:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47223 * 2 1 4 4 N 1.46902 * 109.47449 * 120.00197 * 2 1 3 5 5 C 1.46846 * 110.99617 * 299.21154 * 4 2 1 6 6 C 1.53040 * 109.51964 * 174.15808 * 5 4 2 7 7 C 1.53119 * 109.28089 * 59.17912 * 6 5 4 8 8 C 1.50693 * 109.57354 * 182.40778 * 7 6 5 9 9 O 1.21289 * 119.99994 * 119.71770 * 8 7 6 10 10 N 1.34772 * 120.00123 * 299.71232 * 8 7 6 11 11 C 1.46506 * 120.00040 * 180.02562 * 10 8 7 12 12 H 1.09003 * 112.84741 * 23.80193 * 11 10 8 13 13 C 1.53773 * 113.61836 * 155.00210 * 11 10 8 14 14 C 1.53779 * 87.08612 * 139.97770 * 13 11 10 15 15 H 1.08998 * 113.61688 * 219.93365 * 14 13 11 16 16 N 1.46499 * 113.61340 * 89.11321 * 14 13 11 17 17 C 1.36935 * 120.00094 * 154.99832 * 16 14 13 18 18 H 1.08003 * 119.99599 * 0.02562 * 17 16 14 19 19 C 1.38812 * 120.00330 * 180.02562 * 17 16 14 20 20 N 1.31618 * 119.99538 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99996 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47446 * 60.00233 * 21 19 17 23 23 H 1.48500 * 109.46954 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47117 * 299.99943 * 21 19 17 25 25 C 1.53785 * 113.61167 * 252.50122 * 11 10 8 26 26 C 1.53124 * 109.15841 * 302.34776 * 7 6 5 27 27 C 1.46846 * 111.00204 * 175.00049 * 4 2 1 28 28 H 1.09000 * 109.47095 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47253 * 299.99648 * 1 2 3 30 30 H 1.09005 * 109.46829 * 60.00015 * 1 2 3 31 31 H 1.09005 * 109.47527 * 240.00343 * 2 1 3 32 32 H 1.09005 * 109.47521 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47556 * 300.00044 * 3 2 1 34 34 H 1.09001 * 109.46798 * 60.00230 * 3 2 1 35 35 H 1.08996 * 109.46231 * 294.17554 * 5 4 2 36 36 H 1.09004 * 109.46418 * 54.14394 * 5 4 2 37 37 H 1.09004 * 109.50602 * 299.23671 * 6 5 4 38 38 H 1.09001 * 109.53370 * 179.14510 * 6 5 4 39 39 H 1.08999 * 109.51878 * 62.24548 * 7 6 5 40 40 H 0.96996 * 120.00670 * 0.02562 * 10 8 7 41 41 H 1.08996 * 113.61615 * 254.53358 * 13 11 10 42 42 H 1.09003 * 113.61199 * 25.42474 * 13 11 10 43 43 H 0.96998 * 119.99803 * 335.00586 * 16 14 13 44 44 H 0.97004 * 119.99345 * 179.97438 * 20 19 17 45 45 H 1.08995 * 113.61370 * 334.56332 * 25 11 10 46 46 H 1.08998 * 113.61727 * 105.47056 * 25 11 10 47 47 H 1.08999 * 109.49853 * 297.70868 * 26 7 6 48 48 H 1.08994 * 109.53481 * 177.61659 * 26 7 6 49 49 H 1.09001 * 109.45990 * 305.85570 * 27 4 2 50 50 H 1.08997 * 109.46419 * 65.82250 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 1.5644 -0.0158 2.4205 6 6 1.9682 -0.8420 3.6438 7 6 3.4907 -1.0033 3.6649 8 6 3.8909 -1.8655 4.8342 9 8 4.4808 -2.9082 4.6449 10 7 3.5936 -1.4778 6.0902 11 6 3.9832 -2.3158 7.2270 12 1 4.8250 -2.9705 7.0014 13 6 4.1455 -1.5343 8.5414 14 6 3.4723 -2.7263 9.2419 15 1 2.7711 -2.4343 10.0236 16 7 4.4151 -3.7585 9.6799 17 6 4.0886 -4.5871 10.7201 18 1 3.1358 -4.4800 11.2172 19 6 4.9822 -5.5648 11.1355 20 7 6.1435 -5.6950 10.5300 21 14 4.5364 -6.6956 12.5539 22 1 3.3064 -7.4550 12.2139 23 1 5.6521 -7.6441 12.8003 24 1 4.2965 -5.8862 13.7757 25 6 2.8005 -3.0378 7.8940 26 6 3.9438 -1.6664 2.3612 27 6 3.4828 -0.8164 1.1751 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 2.0229 0.9711 2.4813 36 1 0.4797 0.0887 2.3948 37 1 1.4989 -1.8244 3.5907 38 1 1.6436 -0.3323 4.5511 39 1 3.9595 -0.0236 3.7572 40 1 3.1216 -0.6441 6.2417 41 1 5.1845 -1.3851 8.8352 42 1 3.5581 -0.6169 8.5793 43 1 5.2707 -3.8548 9.2332 44 1 6.7680 -6.3779 10.8206 45 1 1.8453 -2.5315 7.7550 46 1 2.7536 -4.1025 7.6652 47 1 3.5056 -2.6617 2.2878 48 1 5.0308 -1.7458 2.3513 49 1 3.7914 -1.2933 0.2448 50 1 3.9323 0.1743 1.2417 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020865569.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:31:21 Heat of formation + Delta-G solvation = -12.277494 kcal Electronic energy + Delta-G solvation = -25998.555219 eV Core-core repulsion = 22446.999042 eV Total energy + Delta-G solvation = -3551.556178 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.43675 -39.26283 -37.93032 -35.14619 -34.00798 -32.64230 -31.23081 -30.64854 -29.61324 -27.61776 -25.72529 -25.07931 -24.09665 -23.43669 -22.71545 -21.29669 -20.16900 -19.48698 -18.71560 -17.35110 -17.09829 -16.38723 -15.87312 -15.45500 -15.09794 -14.86060 -14.66981 -14.51986 -14.16050 -13.90552 -13.77278 -13.49313 -13.07748 -12.99936 -12.68317 -12.53637 -12.37273 -12.20109 -12.01097 -11.91644 -11.75690 -11.60310 -11.45726 -11.30616 -11.07901 -10.84997 -10.80149 -10.77604 -10.57104 -10.24694 -10.14963 -9.85095 -9.68944 -9.39687 -8.89049 -8.63556 -8.56518 -6.98753 -5.77276 -3.07334 2.81247 3.38888 3.44885 3.49019 3.50427 3.54279 4.39299 4.47242 4.57803 4.58811 4.60938 4.76210 4.89810 4.98504 5.00629 5.05715 5.12460 5.20830 5.25546 5.26241 5.29573 5.35413 5.41896 5.42750 5.48147 5.50597 5.54665 5.57596 5.67994 5.80580 5.86272 5.90078 5.90541 5.98504 6.02822 6.11270 6.22128 6.26635 6.41068 6.66067 6.75919 6.81355 6.82277 6.82822 7.07314 7.69836 7.74424 8.40917 8.45211 9.51480 10.08096 10.42087 11.44847 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.034681 B = 0.002242 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.156344 B =12487.811839 C =12644.776618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.075 3.925 3 C -0.188 4.188 4 N -0.532 5.532 5 C 0.052 3.948 6 C -0.107 4.107 7 C -0.108 4.108 8 C 0.513 3.487 9 O -0.537 6.537 10 N -0.718 5.718 11 C 0.125 3.875 12 H 0.112 0.888 13 C -0.165 4.165 14 C 0.172 3.828 15 H 0.067 0.933 16 N -0.705 5.705 17 C -0.246 4.246 18 H 0.072 0.928 19 C -0.012 4.012 20 N -0.930 5.930 21 Si 0.910 3.090 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.285 1.285 25 C -0.183 4.183 26 C -0.096 4.096 27 C 0.055 3.945 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.037 0.963 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.394 0.606 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.386 0.614 44 H 0.257 0.743 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.080 0.920 48 H 0.074 0.926 49 H 0.076 0.924 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.172 17.740 -21.000 29.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.033 4.033 3 C -0.247 4.247 4 N -0.256 5.256 5 C -0.075 4.075 6 C -0.145 4.145 7 C -0.129 4.129 8 C 0.299 3.701 9 O -0.413 6.413 10 N -0.368 5.368 11 C 0.021 3.979 12 H 0.130 0.870 13 C -0.205 4.205 14 C 0.058 3.942 15 H 0.085 0.915 16 N -0.344 5.344 17 C -0.377 4.377 18 H 0.090 0.910 19 C -0.208 4.208 20 N -0.578 5.578 21 Si 0.741 3.259 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.226 4.226 26 C -0.135 4.135 27 C -0.073 4.073 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.228 0.772 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.220 0.780 44 H 0.067 0.933 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.099 0.901 48 H 0.092 0.908 49 H 0.095 0.905 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -9.962 16.367 -20.956 28.394 hybrid contribution 0.224 0.624 0.634 0.917 sum -9.738 16.991 -20.322 28.222 Atomic orbital electron populations 1.21883 0.94277 1.02588 1.01612 1.21702 0.95827 0.92318 0.93451 1.22496 1.01554 0.98250 1.02383 1.62170 1.10897 1.50888 1.01648 1.22150 1.00747 0.95226 0.89423 1.21582 0.93518 1.01926 0.97489 1.21394 0.97597 0.99582 0.94352 1.20575 0.78846 0.86488 0.84203 1.90730 1.40894 1.24402 1.85254 1.46145 1.59349 1.25215 1.06076 1.22619 0.99243 0.93235 0.82801 0.86988 1.23892 1.02136 0.98663 0.95763 1.20910 0.92118 0.88599 0.92533 0.91452 1.42189 1.17690 1.35916 1.38590 1.19222 1.00971 1.09615 1.07853 0.90995 1.24789 0.96467 0.99675 0.99886 1.69662 1.08397 1.36402 1.43318 0.86229 0.77159 0.80472 0.82069 1.21185 1.21675 1.21213 1.24301 0.96683 1.01074 1.00500 1.21398 1.01173 0.99838 0.91041 1.22131 0.87171 0.98657 0.99292 0.91706 0.92491 0.92348 0.89977 0.92479 0.92122 0.92311 0.94489 0.90079 0.90334 0.91049 0.89227 0.77220 0.90954 0.90424 0.77979 0.93325 0.91343 0.91111 0.90112 0.90775 0.90515 0.94671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 8.99 37.16 0.33 -0.54 16 2 C 0.08 0.50 2.96 -67.71 -0.20 0.30 16 3 C -0.19 -1.10 8.50 37.16 0.32 -0.78 16 4 N -0.53 -4.37 4.64 -226.69 -1.05 -5.42 16 5 C 0.05 0.39 4.63 -3.83 -0.02 0.37 16 6 C -0.11 -0.92 5.26 -26.65 -0.14 -1.06 16 7 C -0.11 -1.10 2.59 -91.65 -0.24 -1.34 16 8 C 0.51 7.40 7.16 -10.99 -0.08 7.32 16 9 O -0.54 -10.37 15.58 5.55 0.09 -10.28 16 10 N -0.72 -9.45 5.26 -53.02 -0.28 -9.73 16 11 C 0.12 2.09 4.12 -67.12 -0.28 1.82 16 12 H 0.11 2.29 7.46 -51.93 -0.39 1.91 16 13 C -0.16 -2.62 7.58 -25.92 -0.20 -2.81 16 14 C 0.17 3.38 4.56 -67.12 -0.31 3.07 16 15 H 0.07 1.30 8.10 -51.93 -0.42 0.87 16 16 N -0.71 -17.85 5.31 -52.64 -0.28 -18.13 16 17 C -0.25 -6.86 9.97 -15.06 -0.15 -7.01 16 18 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 19 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -28.48 13.06 55.49 0.72 -27.76 16 21 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 C -0.18 -3.26 7.68 -25.91 -0.20 -3.46 16 26 C -0.10 -1.02 4.68 -26.65 -0.12 -1.15 16 27 C 0.06 0.46 5.02 -3.84 -0.02 0.44 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.33 6.30 -51.93 -0.33 0.01 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.55 8.08 -51.93 -0.42 0.13 16 32 H 0.06 0.35 6.65 -51.93 -0.35 0.01 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.35 6.52 -51.93 -0.34 0.01 16 35 H 0.04 0.26 6.62 -51.93 -0.34 -0.09 16 36 H 0.08 0.56 6.03 -51.93 -0.31 0.24 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.51 7.67 -51.93 -0.40 0.11 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.39 3.86 8.22 -40.82 -0.34 3.52 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.08 0.98 8.12 -51.93 -0.42 0.56 16 43 H 0.39 10.47 7.90 -40.82 -0.32 10.15 16 44 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 45 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 47 H 0.08 1.03 8.04 -51.93 -0.42 0.61 16 48 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 50 H 0.04 0.27 6.73 -51.93 -0.35 -0.08 16 LS Contribution 383.85 15.07 5.78 5.78 Total: -1.00 -32.52 383.85 -10.34 -42.86 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -8.91 Total: 10.43 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -1.39 Total: -5.27 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: -0.89 Total: -61.04 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.52 -10.34 -42.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020865569.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.587 kcal (2) G-P(sol) polarization free energy of solvation -32.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds