Wall clock time and date at job start Tue Mar 31 2020 09:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47223 * 2 1 4 4 N 1.46902 * 109.47449 * 120.00197 * 2 1 3 5 5 C 1.46846 * 110.99617 * 299.21154 * 4 2 1 6 6 C 1.53040 * 109.51964 * 174.15808 * 5 4 2 7 7 C 1.53119 * 109.28089 * 59.17912 * 6 5 4 8 8 C 1.50693 * 109.57354 * 182.40778 * 7 6 5 9 9 O 1.21289 * 119.99994 * 119.71770 * 8 7 6 10 10 N 1.34772 * 120.00123 * 299.71232 * 8 7 6 11 11 C 1.46506 * 120.00040 * 180.02562 * 10 8 7 12 12 H 1.09003 * 112.84741 * 23.80193 * 11 10 8 13 13 C 1.53773 * 113.61836 * 155.00210 * 11 10 8 14 14 C 1.53779 * 87.08612 * 139.97770 * 13 11 10 15 15 H 1.08998 * 113.61688 * 219.93365 * 14 13 11 16 16 N 1.46499 * 113.61340 * 89.11321 * 14 13 11 17 17 C 1.36935 * 120.00094 * 154.99832 * 16 14 13 18 18 H 1.08003 * 119.99599 * 0.02562 * 17 16 14 19 19 C 1.38812 * 120.00330 * 180.02562 * 17 16 14 20 20 N 1.31618 * 119.99538 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99996 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47446 * 60.00233 * 21 19 17 23 23 H 1.48500 * 109.46954 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47117 * 299.99943 * 21 19 17 25 25 C 1.53785 * 113.61167 * 252.50122 * 11 10 8 26 26 C 1.53124 * 109.15841 * 302.34776 * 7 6 5 27 27 C 1.46846 * 111.00204 * 175.00049 * 4 2 1 28 28 H 1.09000 * 109.47095 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47253 * 299.99648 * 1 2 3 30 30 H 1.09005 * 109.46829 * 60.00015 * 1 2 3 31 31 H 1.09005 * 109.47527 * 240.00343 * 2 1 3 32 32 H 1.09005 * 109.47521 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47556 * 300.00044 * 3 2 1 34 34 H 1.09001 * 109.46798 * 60.00230 * 3 2 1 35 35 H 1.08996 * 109.46231 * 294.17554 * 5 4 2 36 36 H 1.09004 * 109.46418 * 54.14394 * 5 4 2 37 37 H 1.09004 * 109.50602 * 299.23671 * 6 5 4 38 38 H 1.09001 * 109.53370 * 179.14510 * 6 5 4 39 39 H 1.08999 * 109.51878 * 62.24548 * 7 6 5 40 40 H 0.96996 * 120.00670 * 0.02562 * 10 8 7 41 41 H 1.08996 * 113.61615 * 254.53358 * 13 11 10 42 42 H 1.09003 * 113.61199 * 25.42474 * 13 11 10 43 43 H 0.96998 * 119.99803 * 335.00586 * 16 14 13 44 44 H 0.97004 * 119.99345 * 179.97438 * 20 19 17 45 45 H 1.08995 * 113.61370 * 334.56332 * 25 11 10 46 46 H 1.08998 * 113.61727 * 105.47056 * 25 11 10 47 47 H 1.08999 * 109.49853 * 297.70868 * 26 7 6 48 48 H 1.08994 * 109.53481 * 177.61659 * 26 7 6 49 49 H 1.09001 * 109.45990 * 305.85570 * 27 4 2 50 50 H 1.08997 * 109.46419 * 65.82250 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 1.5644 -0.0158 2.4205 6 6 1.9682 -0.8420 3.6438 7 6 3.4907 -1.0033 3.6649 8 6 3.8909 -1.8655 4.8342 9 8 4.4808 -2.9082 4.6449 10 7 3.5936 -1.4778 6.0902 11 6 3.9832 -2.3158 7.2270 12 1 4.8250 -2.9705 7.0014 13 6 4.1455 -1.5343 8.5414 14 6 3.4723 -2.7263 9.2419 15 1 2.7711 -2.4343 10.0236 16 7 4.4151 -3.7585 9.6799 17 6 4.0886 -4.5871 10.7201 18 1 3.1358 -4.4800 11.2172 19 6 4.9822 -5.5648 11.1355 20 7 6.1435 -5.6950 10.5300 21 14 4.5364 -6.6956 12.5539 22 1 3.3064 -7.4550 12.2139 23 1 5.6521 -7.6441 12.8003 24 1 4.2965 -5.8862 13.7757 25 6 2.8005 -3.0378 7.8940 26 6 3.9438 -1.6664 2.3612 27 6 3.4828 -0.8164 1.1751 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 2.0229 0.9711 2.4813 36 1 0.4797 0.0887 2.3948 37 1 1.4989 -1.8244 3.5907 38 1 1.6436 -0.3323 4.5511 39 1 3.9595 -0.0236 3.7572 40 1 3.1216 -0.6441 6.2417 41 1 5.1845 -1.3851 8.8352 42 1 3.5581 -0.6169 8.5793 43 1 5.2707 -3.8548 9.2332 44 1 6.7680 -6.3779 10.8206 45 1 1.8453 -2.5315 7.7550 46 1 2.7536 -4.1025 7.6652 47 1 3.5056 -2.6617 2.2878 48 1 5.0308 -1.7458 2.3513 49 1 3.7914 -1.2933 0.2448 50 1 3.9323 0.1743 1.2417 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020865569.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:31:20 Heat of formation + Delta-G solvation = -35.533000 kcal Electronic energy + Delta-G solvation = -25999.563654 eV Core-core repulsion = 22446.999042 eV Total energy + Delta-G solvation = -3552.564612 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.46576 -40.26276 -39.22486 -35.91839 -35.73622 -34.23025 -32.09149 -31.59846 -31.16870 -28.05995 -26.83133 -26.50482 -25.79253 -24.21581 -24.10368 -22.22197 -21.13096 -20.30616 -20.04756 -19.35177 -18.14725 -17.46281 -16.91055 -16.65389 -16.28235 -15.88390 -15.80246 -15.54753 -15.24072 -15.02230 -14.91409 -14.60955 -14.33717 -14.16838 -13.66002 -13.56866 -13.36597 -13.27144 -13.11550 -12.88060 -12.79706 -12.76157 -12.57951 -12.33755 -12.22706 -12.18717 -11.93707 -11.82164 -11.71063 -11.65286 -11.54237 -11.34176 -11.21739 -10.89453 -10.60722 -9.94598 -9.13371 -9.03645 -7.96150 -5.26103 1.46449 1.50412 1.56350 1.65772 2.25916 2.55036 2.96585 3.35542 3.60294 3.65623 3.77152 3.80365 3.88604 3.92739 4.01569 4.18670 4.26459 4.30863 4.31785 4.35856 4.40109 4.43524 4.53200 4.66557 4.74811 4.78282 4.80154 4.82676 4.85324 4.91026 4.94235 5.00480 5.05461 5.09216 5.16544 5.19581 5.21713 5.26047 5.32067 5.34561 5.38494 5.46328 5.50735 5.71170 6.22521 6.26084 6.26839 6.64930 7.30400 7.35165 8.07047 8.28227 9.27214 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.034681 B = 0.002242 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.156344 B =12487.811839 C =12644.776618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.074 3.926 3 C -0.182 4.182 4 N -0.548 5.548 5 C 0.055 3.945 6 C -0.102 4.102 7 C -0.096 4.096 8 C 0.508 3.492 9 O -0.595 6.595 10 N -0.699 5.699 11 C 0.130 3.870 12 H 0.065 0.935 13 C -0.137 4.137 14 C 0.150 3.850 15 H 0.079 0.921 16 N -0.724 5.724 17 C -0.244 4.244 18 H 0.083 0.917 19 C -0.081 4.081 20 N -0.972 5.972 21 Si 0.978 3.022 22 H -0.279 1.279 23 H -0.298 1.298 24 H -0.272 1.272 25 C -0.170 4.170 26 C -0.095 4.095 27 C 0.064 3.936 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.091 0.909 37 H 0.054 0.946 38 H 0.096 0.904 39 H 0.119 0.881 40 H 0.417 0.583 41 H 0.059 0.941 42 H 0.127 0.873 43 H 0.371 0.629 44 H 0.251 0.749 45 H 0.107 0.893 46 H 0.030 0.970 47 H 0.050 0.950 48 H 0.062 0.938 49 H 0.077 0.923 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.465 20.931 -21.178 32.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.034 4.034 3 C -0.241 4.241 4 N -0.273 5.273 5 C -0.072 4.072 6 C -0.140 4.140 7 C -0.117 4.117 8 C 0.296 3.704 9 O -0.475 6.475 10 N -0.351 5.351 11 C 0.024 3.976 12 H 0.084 0.916 13 C -0.176 4.176 14 C 0.039 3.961 15 H 0.097 0.903 16 N -0.361 5.361 17 C -0.376 4.376 18 H 0.100 0.900 19 C -0.273 4.273 20 N -0.623 5.623 21 Si 0.807 3.193 22 H -0.205 1.205 23 H -0.225 1.225 24 H -0.198 1.198 25 C -0.212 4.212 26 C -0.134 4.134 27 C -0.064 4.064 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.109 0.891 37 H 0.073 0.927 38 H 0.114 0.886 39 H 0.136 0.864 40 H 0.255 0.745 41 H 0.078 0.922 42 H 0.145 0.855 43 H 0.202 0.798 44 H 0.059 0.941 45 H 0.125 0.875 46 H 0.049 0.951 47 H 0.068 0.932 48 H 0.080 0.920 49 H 0.096 0.904 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.337 19.645 -21.139 31.384 hybrid contribution 0.874 -0.335 0.613 1.119 sum -11.463 19.309 -20.526 30.423 Atomic orbital electron populations 1.21857 0.93713 1.02054 1.02406 1.21737 0.96232 0.92803 0.92606 1.22436 1.01293 0.97447 1.02943 1.62144 1.10562 1.51972 1.02649 1.22161 1.01432 0.95335 0.88311 1.21589 0.91635 1.01332 0.99469 1.21392 0.99128 0.99512 0.91667 1.21407 0.77558 0.86089 0.85346 1.90716 1.43514 1.27191 1.86067 1.45885 1.58940 1.25455 1.04791 1.22157 0.97370 0.93453 0.84579 0.91633 1.23729 1.01880 0.98807 0.93212 1.21260 0.92187 0.89015 0.93599 0.90306 1.42400 1.18179 1.37271 1.38294 1.19687 1.00900 1.09285 1.07712 0.89954 1.25673 0.96691 1.01876 1.03031 1.69842 1.09675 1.37380 1.45379 0.85142 0.76579 0.78347 0.79271 1.20470 1.22452 1.19822 1.24171 0.98666 0.99239 0.99121 1.21341 1.00302 0.98989 0.92745 1.22010 0.87679 0.98695 0.98012 0.92891 0.92053 0.91195 0.90345 0.92783 0.91299 0.92009 0.93020 0.89112 0.92676 0.88598 0.86357 0.74477 0.92202 0.85466 0.79768 0.94068 0.87507 0.95072 0.93158 0.91975 0.90437 0.93289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.99 71.98 0.65 -0.76 16 2 C 0.07 0.84 2.96 44.91 0.13 0.97 16 3 C -0.18 -1.61 8.50 71.98 0.61 -1.00 16 4 N -0.55 -8.04 4.64 -871.12 -4.04 -12.08 16 5 C 0.06 0.66 4.63 86.33 0.40 1.06 16 6 C -0.10 -1.50 5.26 30.65 0.16 -1.34 16 7 C -0.10 -1.80 2.59 -11.46 -0.03 -1.83 16 8 C 0.51 14.46 7.16 87.66 0.63 15.09 16 9 O -0.59 -24.17 15.58 -3.06 -0.05 -24.21 16 10 N -0.70 -17.08 5.26 -440.03 -2.32 -19.39 16 11 C 0.13 4.30 4.12 45.52 0.19 4.49 16 12 H 0.07 2.85 7.46 -2.39 -0.02 2.83 16 13 C -0.14 -4.05 7.58 31.12 0.24 -3.82 16 14 C 0.15 5.76 4.56 45.52 0.21 5.96 16 15 H 0.08 2.84 8.10 -2.39 -0.02 2.82 16 16 N -0.72 -37.44 5.31 -320.44 -1.70 -39.14 16 17 C -0.24 -13.77 9.97 84.03 0.84 -12.94 16 18 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 19 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 20 N -0.97 -61.69 13.06 21.65 0.28 -61.41 16 21 Si 0.98 47.02 29.55 68.60 2.03 49.05 16 22 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 23 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 24 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 25 C -0.17 -5.91 7.68 31.12 0.24 -5.67 16 26 C -0.10 -2.03 4.68 30.65 0.14 -1.89 16 27 C 0.06 0.99 5.02 86.32 0.43 1.42 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.55 6.30 -2.39 -0.02 0.53 16 30 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.08 0.94 8.08 -2.38 -0.02 0.92 16 32 H 0.05 0.52 6.65 -2.38 -0.02 0.50 16 33 H 0.07 0.50 8.14 -2.39 -0.02 0.49 16 34 H 0.06 0.52 6.52 -2.39 -0.02 0.50 16 35 H 0.05 0.50 6.62 -2.39 -0.02 0.48 16 36 H 0.09 0.95 6.03 -2.38 -0.01 0.93 16 37 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.10 0.95 7.67 -2.39 -0.02 0.93 16 39 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.42 6.38 8.22 -92.71 -0.76 5.62 16 41 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.13 2.55 8.12 -2.39 -0.02 2.53 16 43 H 0.37 21.08 7.90 -92.71 -0.73 20.34 16 44 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 45 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 46 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.05 1.37 8.04 -2.39 -0.02 1.35 16 48 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.08 1.18 8.08 -2.39 -0.02 1.16 16 50 H 0.05 0.64 6.73 -2.39 -0.02 0.62 16 Total: -1.00 -75.47 383.85 -1.06 -76.53 By element: Atomic # 1 Polarization: 35.76 SS G_CDS: -0.57 Total: 35.20 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 5.30 Total: -4.54 kcal Atomic # 7 Polarization: -124.24 SS G_CDS: -7.78 Total: -132.02 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.05 Total: -24.21 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -75.47 -1.06 -76.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020865569.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.995 kcal (2) G-P(sol) polarization free energy of solvation -75.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds