Wall clock time and date at job start Tue Mar 31 2020 09:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36936 * 119.99920 * 2 1 4 4 H 1.08005 * 119.99350 * 221.31282 * 3 2 1 5 5 C 1.38809 * 120.00365 * 41.31361 * 3 2 1 6 6 N 1.31612 * 120.00120 * 202.83421 * 5 3 2 7 7 Si 1.86803 * 119.99918 * 22.83483 * 5 3 2 8 8 H 1.48499 * 109.47183 * 264.39410 * 7 5 3 9 9 H 1.48503 * 109.46823 * 24.39130 * 7 5 3 10 10 H 1.48496 * 109.46932 * 144.38980 * 7 5 3 11 11 C 1.46496 * 119.99742 * 179.97438 * 2 1 3 12 12 H 1.08999 * 109.49958 * 180.02562 * 11 2 1 13 13 C 1.53041 * 109.50086 * 300.16686 * 11 2 1 14 14 C 1.53043 * 109.53807 * 181.31546 * 13 11 2 15 15 C 1.53188 * 109.31326 * 298.63506 * 14 13 11 16 16 N 1.46924 * 108.77692 * 54.63362 * 15 14 13 17 17 C 1.34784 * 120.62763 * 126.36918 * 16 15 14 18 18 O 1.21279 * 119.99363 * 180.02562 * 17 16 15 19 19 C 1.50695 * 119.99998 * 0.02562 * 17 16 15 20 20 H 1.09003 * 109.46213 * 39.97846 * 19 17 16 21 21 C 1.53036 * 109.46531 * 279.99916 * 19 17 16 22 22 C 1.53116 * 109.28234 * 180.80680 * 21 19 17 23 23 C 1.53117 * 109.15859 * 57.65284 * 22 21 19 24 24 C 1.53035 * 109.28163 * 302.34639 * 23 22 21 25 25 N 1.46844 * 109.46029 * 159.94758 * 19 17 16 26 26 C 1.46900 * 111.00239 * 305.85466 * 25 19 17 27 27 C 1.46925 * 118.73867 * 306.39404 * 16 15 14 28 28 H 1.08999 * 109.46802 * 94.45644 * 1 2 3 29 29 H 1.08998 * 109.47416 * 214.45619 * 1 2 3 30 30 H 1.09006 * 109.47403 * 334.46078 * 1 2 3 31 31 H 0.97003 * 120.00324 * 179.97438 * 6 5 3 32 32 H 1.09006 * 109.45810 * 301.33666 * 13 11 2 33 33 H 1.08995 * 109.46042 * 61.29805 * 13 11 2 34 34 H 1.08995 * 109.49620 * 178.67826 * 14 13 11 35 35 H 1.08998 * 109.52064 * 58.60408 * 14 13 11 36 36 H 1.08999 * 109.58438 * 294.84371 * 15 14 13 37 37 H 1.09001 * 109.58607 * 174.42194 * 15 14 13 38 38 H 1.08998 * 109.50395 * 300.75084 * 21 19 17 39 39 H 1.09002 * 109.50213 * 60.86103 * 21 19 17 40 40 H 1.08996 * 109.52537 * 177.55828 * 22 21 19 41 41 H 1.09000 * 109.52086 * 297.75093 * 22 21 19 42 42 H 1.09003 * 109.50443 * 62.29056 * 23 22 21 43 43 H 1.09004 * 109.50250 * 182.40692 * 23 22 21 44 44 H 1.09000 * 109.46737 * 179.19325 * 24 23 22 45 45 H 1.09000 * 109.46232 * 299.17783 * 24 23 22 46 46 H 1.08998 * 109.47304 * 59.99649 * 26 25 19 47 47 H 1.08992 * 109.47458 * 180.02562 * 26 25 19 48 48 H 1.09002 * 109.47055 * 300.00378 * 26 25 19 49 49 H 1.08997 * 109.58585 * 293.81497 * 27 16 15 50 50 H 1.08997 * 109.58249 * 173.39530 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0281 1.3022 -0.6175 5 6 1.7148 2.2385 0.7936 6 7 2.0523 3.4740 0.4908 7 14 0.6506 1.9013 2.2913 8 1 -0.7802 2.0658 1.9292 9 1 0.8853 0.5128 2.7628 10 1 1.0006 2.8570 3.3726 11 6 2.1974 -1.2687 0.0006 12 1 3.2692 -1.0701 0.0009 13 6 1.8250 -2.0731 1.2482 14 6 2.6143 -3.3841 1.2664 15 6 2.2494 -4.2124 0.0304 16 7 2.4681 -3.3930 -1.1694 17 6 3.2418 -3.8435 -2.1769 18 8 3.4149 -3.1573 -3.1618 19 6 3.8916 -5.1996 -2.0795 20 1 3.1929 -5.9058 -1.6308 21 6 5.1471 -5.1022 -1.2098 22 6 5.8150 -6.4778 -1.1302 23 6 6.1448 -6.9589 -2.5458 24 6 4.8605 -7.0026 -3.3768 25 7 4.2603 -5.6631 -3.4232 26 6 3.1014 -5.6366 -4.3256 27 6 1.8278 -2.0730 -1.2497 28 1 -0.3633 -0.0799 -1.0246 29 1 -0.3634 -0.8473 0.5814 30 1 -0.3634 0.9273 0.4431 31 1 1.7481 4.2097 1.0452 32 1 2.0644 -1.4926 2.1393 33 1 0.7574 -2.2922 1.2337 34 1 2.3661 -3.9457 2.1669 35 1 3.6823 -3.1665 1.2562 36 1 1.2017 -4.5081 0.0850 37 1 2.8800 -5.1003 -0.0136 38 1 5.8405 -4.3860 -1.6506 39 1 4.8711 -4.7731 -0.2080 40 1 6.7331 -6.4037 -0.5474 41 1 5.1361 -7.1852 -0.6539 42 1 6.8539 -6.2719 -3.0077 43 1 6.5817 -7.9565 -2.4986 44 1 5.0940 -7.3311 -4.3895 45 1 4.1571 -7.7000 -2.9219 46 1 2.7216 -4.6176 -4.3994 47 1 3.4022 -5.9850 -5.3136 48 1 2.3204 -6.2878 -3.9333 49 1 0.7457 -2.1942 -1.2996 50 1 2.1803 -1.5495 -2.1384 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027464441.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:12 Heat of formation + Delta-G solvation = -2.713113 kcal Electronic energy + Delta-G solvation = -27748.288549 eV Core-core repulsion = 24197.147114 eV Total energy + Delta-G solvation = -3551.141435 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.65968 -38.63417 -37.22036 -35.29807 -33.66054 -32.45918 -31.61463 -31.34930 -29.30985 -27.06297 -26.14251 -25.43473 -24.07557 -23.35259 -22.84601 -21.72683 -20.28222 -19.47052 -18.56806 -17.26206 -16.81283 -16.27758 -15.51911 -15.47074 -15.07097 -14.74839 -14.57721 -14.36823 -14.11428 -13.96522 -13.74735 -13.46196 -13.23274 -13.05672 -12.80010 -12.54063 -12.47563 -12.24735 -12.11063 -12.08658 -11.77617 -11.55679 -11.27184 -11.10023 -10.99250 -10.94123 -10.70551 -10.62473 -10.49611 -10.34844 -10.17962 -9.96699 -9.61218 -9.40061 -8.65501 -8.43526 -8.30825 -6.76184 -6.01168 -3.46350 2.74269 3.01252 3.30885 3.44912 3.50260 3.76617 4.38147 4.51519 4.53964 4.67272 4.73463 4.85168 4.90111 4.97275 5.07425 5.14485 5.20736 5.23654 5.30345 5.32983 5.35847 5.42836 5.47807 5.50626 5.63597 5.67220 5.68655 5.77878 5.85231 5.87302 5.90229 6.01485 6.02902 6.12163 6.13907 6.23671 6.34661 6.39422 6.54229 6.61502 6.74262 6.79717 6.87778 6.91063 6.93257 7.59914 8.05924 8.36438 8.42990 8.98228 9.69024 10.10981 11.14066 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.025317 B = 0.003558 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.726648 B = 7867.876401 C = 8139.319066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.601 5.601 3 C -0.273 4.273 4 H 0.077 0.923 5 C 0.040 3.960 6 N -0.897 5.897 7 Si 0.878 3.122 8 H -0.287 1.287 9 H -0.267 1.267 10 H -0.301 1.301 11 C 0.167 3.833 12 H 0.075 0.925 13 C -0.138 4.138 14 C -0.131 4.131 15 C 0.105 3.895 16 N -0.607 5.607 17 C 0.516 3.484 18 O -0.521 6.521 19 C 0.072 3.928 20 H 0.059 0.941 21 C -0.111 4.111 22 C -0.118 4.118 23 C -0.120 4.120 24 C 0.057 3.943 25 N -0.520 5.520 26 C 0.015 3.985 27 C 0.101 3.899 28 H 0.014 0.986 29 H 0.027 0.973 30 H 0.048 0.952 31 H 0.264 0.736 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.031 0.969 46 H 0.090 0.910 47 H 0.068 0.932 48 H 0.018 0.982 49 H 0.060 0.940 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.960 -24.493 -1.454 24.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.324 5.324 3 C -0.401 4.401 4 H 0.095 0.905 5 C -0.161 4.161 6 N -0.537 5.537 7 Si 0.708 3.292 8 H -0.215 1.215 9 H -0.192 1.192 10 H -0.229 1.229 11 C 0.058 3.942 12 H 0.093 0.907 13 C -0.178 4.178 14 C -0.170 4.170 15 C -0.019 4.019 16 N -0.341 5.341 17 C 0.302 3.698 18 O -0.396 6.396 19 C -0.039 4.039 20 H 0.076 0.924 21 C -0.149 4.149 22 C -0.156 4.156 23 C -0.157 4.157 24 C -0.071 4.071 25 N -0.245 5.245 26 C -0.132 4.132 27 C -0.023 4.023 28 H 0.033 0.967 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.049 0.951 46 H 0.109 0.891 47 H 0.087 0.913 48 H 0.036 0.964 49 H 0.078 0.922 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.387 -23.575 -2.154 23.914 hybrid contribution -1.412 -0.617 1.355 2.051 sum 1.976 -24.192 -0.799 24.285 Atomic orbital electron populations 1.21318 0.84987 0.99198 0.97964 1.44003 1.00442 1.01454 1.86470 1.18771 1.12409 0.87731 1.21203 0.90523 1.25566 0.97817 0.95177 0.97544 1.69890 1.47242 0.98257 1.38313 0.86882 0.79678 0.78118 0.84527 1.21479 1.19165 1.22898 1.20773 0.97136 0.85737 0.90507 0.90726 1.22149 0.99399 0.95169 1.01068 1.21917 1.01290 0.97164 0.96633 1.21811 1.01227 0.93714 0.85099 1.48192 1.49061 1.18974 1.17876 1.20337 0.78535 0.88041 0.82852 1.90681 1.60371 1.57834 1.30708 1.21612 0.97091 0.94230 0.91007 0.92387 1.21606 0.95797 0.98558 0.98899 1.21574 1.00744 0.96213 0.97083 1.21622 0.97395 1.01409 0.95301 1.22134 0.95802 0.88577 1.00576 1.61612 1.30246 1.24711 1.07980 1.22585 0.90861 1.03565 0.96235 1.22298 0.96495 0.81501 1.01989 0.96737 0.95426 0.93314 0.92660 0.91367 0.92540 0.91236 0.91421 0.91617 0.90221 0.90113 0.90633 0.91177 0.92149 0.90758 0.91438 0.90415 0.95089 0.89116 0.91342 0.96393 0.92214 0.88919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.37 8.38 59.85 0.50 2.87 16 2 N -0.60 -14.14 2.29 -173.35 -0.40 -14.54 16 3 C -0.27 -7.66 9.78 -15.06 -0.15 -7.81 16 4 H 0.08 2.36 8.06 -52.48 -0.42 1.94 16 5 C 0.04 1.16 5.23 -17.43 -0.09 1.07 16 6 N -0.90 -27.47 13.97 55.49 0.78 -26.69 16 7 Si 0.88 21.95 25.29 -169.99 -4.30 17.65 16 8 H -0.29 -7.02 6.73 56.52 0.38 -6.64 16 9 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 10 H -0.30 -7.66 7.11 56.52 0.40 -7.25 16 11 C 0.17 3.26 2.75 -67.81 -0.19 3.07 16 12 H 0.07 1.59 7.89 -51.93 -0.41 1.18 16 13 C -0.14 -2.26 5.10 -26.69 -0.14 -2.39 16 14 C -0.13 -1.58 6.08 -26.61 -0.16 -1.74 16 15 C 0.10 1.16 5.82 -3.71 -0.02 1.14 16 16 N -0.61 -8.91 2.97 -172.78 -0.51 -9.43 16 17 C 0.52 7.97 6.14 -10.98 -0.07 7.91 16 18 O -0.52 -10.15 13.94 5.56 0.08 -10.07 16 19 C 0.07 0.86 1.38 -68.88 -0.10 0.76 16 20 H 0.06 0.60 6.80 -51.93 -0.35 0.25 16 21 C -0.11 -1.14 5.09 -26.65 -0.14 -1.28 16 22 C -0.12 -0.93 6.00 -26.61 -0.16 -1.09 16 23 C -0.12 -0.95 6.09 -26.65 -0.16 -1.11 16 24 C 0.06 0.51 5.46 -3.83 -0.02 0.49 16 25 N -0.52 -6.28 4.51 -236.33 -1.07 -7.35 16 26 C 0.02 0.18 9.10 60.06 0.55 0.73 16 27 C 0.10 1.79 5.79 -3.71 -0.02 1.77 16 28 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.03 0.52 6.47 -51.93 -0.34 0.18 16 30 H 0.05 1.14 4.06 -51.93 -0.21 0.93 16 31 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.06 0.89 6.74 -51.93 -0.35 0.54 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.71 4.75 -51.93 -0.25 0.46 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.08 0.72 6.88 -51.93 -0.36 0.37 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.64 8.08 -51.93 -0.42 0.22 16 45 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 46 H 0.09 1.34 5.63 -51.93 -0.29 1.05 16 47 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 48 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 49 H 0.06 1.02 7.51 -51.93 -0.39 0.63 16 50 H 0.09 1.92 7.00 -51.93 -0.36 1.56 16 LS Contribution 366.08 15.07 5.52 5.52 Total: -1.00 -32.41 366.08 -9.07 -41.47 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -8.80 Total: -0.94 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -0.36 Total: 4.37 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: -1.20 Total: -58.00 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.30 Total: 17.65 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.41 -9.07 -41.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027464441.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.761 kcal (2) G-P(sol) polarization free energy of solvation -32.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds