Wall clock time and date at job start Tue Mar 31 2020 09:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36936 * 119.99920 * 2 1 4 4 H 1.08005 * 119.99350 * 221.31282 * 3 2 1 5 5 C 1.38809 * 120.00365 * 41.31361 * 3 2 1 6 6 N 1.31612 * 120.00120 * 202.83421 * 5 3 2 7 7 Si 1.86803 * 119.99918 * 22.83483 * 5 3 2 8 8 H 1.48499 * 109.47183 * 264.39410 * 7 5 3 9 9 H 1.48503 * 109.46823 * 24.39130 * 7 5 3 10 10 H 1.48496 * 109.46932 * 144.38980 * 7 5 3 11 11 C 1.46496 * 119.99742 * 179.97438 * 2 1 3 12 12 H 1.08999 * 109.49958 * 180.02562 * 11 2 1 13 13 C 1.53041 * 109.50086 * 300.16686 * 11 2 1 14 14 C 1.53043 * 109.53807 * 181.31546 * 13 11 2 15 15 C 1.53188 * 109.31326 * 298.63506 * 14 13 11 16 16 N 1.46924 * 108.77692 * 54.63362 * 15 14 13 17 17 C 1.34784 * 120.62763 * 126.36918 * 16 15 14 18 18 O 1.21279 * 119.99363 * 180.02562 * 17 16 15 19 19 C 1.50695 * 119.99998 * 0.02562 * 17 16 15 20 20 H 1.09003 * 109.46213 * 39.97846 * 19 17 16 21 21 C 1.53036 * 109.46531 * 279.99916 * 19 17 16 22 22 C 1.53116 * 109.28234 * 180.80680 * 21 19 17 23 23 C 1.53117 * 109.15859 * 57.65284 * 22 21 19 24 24 C 1.53035 * 109.28163 * 302.34639 * 23 22 21 25 25 N 1.46844 * 109.46029 * 159.94758 * 19 17 16 26 26 C 1.46900 * 111.00239 * 305.85466 * 25 19 17 27 27 C 1.46925 * 118.73867 * 306.39404 * 16 15 14 28 28 H 1.08999 * 109.46802 * 94.45644 * 1 2 3 29 29 H 1.08998 * 109.47416 * 214.45619 * 1 2 3 30 30 H 1.09006 * 109.47403 * 334.46078 * 1 2 3 31 31 H 0.97003 * 120.00324 * 179.97438 * 6 5 3 32 32 H 1.09006 * 109.45810 * 301.33666 * 13 11 2 33 33 H 1.08995 * 109.46042 * 61.29805 * 13 11 2 34 34 H 1.08995 * 109.49620 * 178.67826 * 14 13 11 35 35 H 1.08998 * 109.52064 * 58.60408 * 14 13 11 36 36 H 1.08999 * 109.58438 * 294.84371 * 15 14 13 37 37 H 1.09001 * 109.58607 * 174.42194 * 15 14 13 38 38 H 1.08998 * 109.50395 * 300.75084 * 21 19 17 39 39 H 1.09002 * 109.50213 * 60.86103 * 21 19 17 40 40 H 1.08996 * 109.52537 * 177.55828 * 22 21 19 41 41 H 1.09000 * 109.52086 * 297.75093 * 22 21 19 42 42 H 1.09003 * 109.50443 * 62.29056 * 23 22 21 43 43 H 1.09004 * 109.50250 * 182.40692 * 23 22 21 44 44 H 1.09000 * 109.46737 * 179.19325 * 24 23 22 45 45 H 1.09000 * 109.46232 * 299.17783 * 24 23 22 46 46 H 1.08998 * 109.47304 * 59.99649 * 26 25 19 47 47 H 1.08992 * 109.47458 * 180.02562 * 26 25 19 48 48 H 1.09002 * 109.47055 * 300.00378 * 26 25 19 49 49 H 1.08997 * 109.58585 * 293.81497 * 27 16 15 50 50 H 1.08997 * 109.58249 * 173.39530 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0281 1.3022 -0.6175 5 6 1.7148 2.2385 0.7936 6 7 2.0523 3.4740 0.4908 7 14 0.6506 1.9013 2.2913 8 1 -0.7802 2.0658 1.9292 9 1 0.8853 0.5128 2.7628 10 1 1.0006 2.8570 3.3726 11 6 2.1974 -1.2687 0.0006 12 1 3.2692 -1.0701 0.0009 13 6 1.8250 -2.0731 1.2482 14 6 2.6143 -3.3841 1.2664 15 6 2.2494 -4.2124 0.0304 16 7 2.4681 -3.3930 -1.1694 17 6 3.2418 -3.8435 -2.1769 18 8 3.4149 -3.1573 -3.1618 19 6 3.8916 -5.1996 -2.0795 20 1 3.1929 -5.9058 -1.6308 21 6 5.1471 -5.1022 -1.2098 22 6 5.8150 -6.4778 -1.1302 23 6 6.1448 -6.9589 -2.5458 24 6 4.8605 -7.0026 -3.3768 25 7 4.2603 -5.6631 -3.4232 26 6 3.1014 -5.6366 -4.3256 27 6 1.8278 -2.0730 -1.2497 28 1 -0.3633 -0.0799 -1.0246 29 1 -0.3634 -0.8473 0.5814 30 1 -0.3634 0.9273 0.4431 31 1 1.7481 4.2097 1.0452 32 1 2.0644 -1.4926 2.1393 33 1 0.7574 -2.2922 1.2337 34 1 2.3661 -3.9457 2.1669 35 1 3.6823 -3.1665 1.2562 36 1 1.2017 -4.5081 0.0850 37 1 2.8800 -5.1003 -0.0136 38 1 5.8405 -4.3860 -1.6506 39 1 4.8711 -4.7731 -0.2080 40 1 6.7331 -6.4037 -0.5474 41 1 5.1361 -7.1852 -0.6539 42 1 6.8539 -6.2719 -3.0077 43 1 6.5817 -7.9565 -2.4986 44 1 5.0940 -7.3311 -4.3895 45 1 4.1571 -7.7000 -2.9219 46 1 2.7216 -4.6176 -4.3994 47 1 3.4022 -5.9850 -5.3136 48 1 2.3204 -6.2878 -3.9333 49 1 0.7457 -2.1942 -1.2996 50 1 2.1803 -1.5495 -2.1384 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027464441.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:11 Heat of formation + Delta-G solvation = -25.268529 kcal Electronic energy + Delta-G solvation = -27749.266625 eV Core-core repulsion = 24197.147114 eV Total energy + Delta-G solvation = -3552.119511 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.76181 -39.74389 -38.49818 -36.89075 -34.49529 -34.11679 -33.11771 -32.40456 -30.70932 -28.07057 -27.90576 -26.57133 -25.58268 -24.33880 -23.77219 -23.08931 -21.25916 -20.70960 -19.74554 -18.93856 -18.35141 -17.41528 -17.17722 -16.57347 -16.20634 -15.82534 -15.67877 -15.44918 -15.36651 -15.24076 -15.08886 -14.70214 -14.34253 -14.19318 -14.05670 -13.96273 -13.90099 -13.71525 -13.58223 -12.98847 -12.85496 -12.68341 -12.65340 -12.36758 -12.15028 -12.12059 -11.92478 -11.88166 -11.76322 -11.67026 -11.61029 -11.37053 -11.30603 -10.74267 -10.52749 -9.71430 -9.25558 -8.69858 -8.24520 -5.68116 1.31575 1.40809 1.54323 1.56435 1.87683 2.40969 2.90852 3.01959 3.32195 3.42546 3.80636 3.90114 3.95960 4.00980 4.03402 4.09861 4.16521 4.18443 4.29963 4.35169 4.43899 4.50587 4.53226 4.57106 4.57847 4.68496 4.77259 4.78721 4.82507 4.84589 4.88143 4.96736 4.99575 5.01856 5.06764 5.07285 5.14503 5.20870 5.27651 5.40917 5.46944 5.47948 5.48675 5.90094 5.94762 6.14183 6.14930 6.46495 6.95855 7.19745 7.57308 8.00254 8.95329 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.025317 B = 0.003558 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.726648 B = 7867.876401 C = 8139.319066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.614 5.614 3 C -0.271 4.271 4 H 0.024 0.976 5 C -0.017 4.017 6 N -0.949 5.949 7 Si 0.953 3.047 8 H -0.273 1.273 9 H -0.246 1.246 10 H -0.307 1.307 11 C 0.166 3.834 12 H 0.040 0.960 13 C -0.130 4.130 14 C -0.123 4.123 15 C 0.101 3.899 16 N -0.606 5.606 17 C 0.508 3.492 18 O -0.574 6.574 19 C 0.082 3.918 20 H 0.087 0.913 21 C -0.110 4.110 22 C -0.112 4.112 23 C -0.119 4.119 24 C 0.057 3.943 25 N -0.547 5.547 26 C 0.021 3.979 27 C 0.115 3.885 28 H 0.020 0.980 29 H 0.066 0.934 30 H 0.031 0.969 31 H 0.265 0.735 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.048 0.952 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.055 0.945 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.049 0.951 46 H 0.054 0.946 47 H 0.078 0.922 48 H 0.034 0.966 49 H 0.072 0.928 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.584 -29.287 1.067 29.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.338 5.338 3 C -0.401 4.401 4 H 0.041 0.959 5 C -0.214 4.214 6 N -0.592 5.592 7 Si 0.780 3.220 8 H -0.200 1.200 9 H -0.169 1.169 10 H -0.235 1.235 11 C 0.059 3.941 12 H 0.059 0.941 13 C -0.169 4.169 14 C -0.162 4.162 15 C -0.020 4.020 16 N -0.339 5.339 17 C 0.296 3.704 18 O -0.453 6.453 19 C -0.030 4.030 20 H 0.105 0.895 21 C -0.148 4.148 22 C -0.150 4.150 23 C -0.157 4.157 24 C -0.070 4.070 25 N -0.273 5.273 26 C -0.127 4.127 27 C -0.010 4.010 28 H 0.038 0.962 29 H 0.085 0.915 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.127 0.873 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.130 0.870 38 H 0.067 0.933 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.073 0.927 43 H 0.111 0.889 44 H 0.101 0.899 45 H 0.067 0.933 46 H 0.072 0.928 47 H 0.097 0.903 48 H 0.052 0.948 49 H 0.091 0.909 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.005 -28.448 0.387 28.522 hybrid contribution -0.900 0.896 0.410 1.334 sum 1.105 -27.553 0.797 27.587 Atomic orbital electron populations 1.21390 0.83378 0.99862 0.98910 1.44061 1.01489 1.01313 1.86965 1.18549 1.11252 0.90070 1.20220 0.95854 1.26259 1.00216 0.94477 1.00416 1.70036 1.49989 0.99452 1.39736 0.85688 0.78177 0.78666 0.79478 1.19961 1.16910 1.23508 1.20808 0.94903 0.84928 0.93418 0.94149 1.22005 1.01009 0.96470 0.97458 1.21900 1.00204 0.95247 0.98844 1.22157 1.03494 0.93781 0.82570 1.48283 1.48442 1.17910 1.19266 1.21199 0.77882 0.89268 0.82019 1.90662 1.62068 1.59634 1.32913 1.21611 0.97845 0.91909 0.91599 0.89539 1.21635 0.94683 0.99786 0.98681 1.21575 1.01464 0.94654 0.97272 1.21647 0.96585 1.02349 0.95106 1.22233 0.96295 0.87045 1.01462 1.61573 1.30542 1.27038 1.08144 1.22451 0.91462 1.01633 0.97177 1.21832 0.97094 0.82983 0.99055 0.96217 0.91546 0.95048 0.92602 0.93201 0.90945 0.87261 0.92066 0.89257 0.86990 0.93270 0.89538 0.90124 0.89843 0.92660 0.88932 0.89911 0.93310 0.92771 0.90339 0.94753 0.90932 0.93353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.53 8.38 127.77 1.07 5.60 16 2 N -0.61 -29.44 2.29 -702.35 -1.61 -31.05 16 3 C -0.27 -16.09 9.78 84.03 0.82 -15.26 16 4 H 0.02 1.60 8.06 -2.91 -0.02 1.58 16 5 C -0.02 -0.99 5.23 84.86 0.44 -0.55 16 6 N -0.95 -60.82 13.97 21.65 0.30 -60.52 16 7 Si 0.95 45.73 25.29 68.60 1.73 47.46 16 8 H -0.27 -12.42 6.73 99.48 0.67 -11.75 16 9 H -0.25 -10.84 7.11 99.48 0.71 -10.13 16 10 H -0.31 -14.91 7.11 99.48 0.71 -14.20 16 11 C 0.17 6.59 2.75 45.07 0.12 6.72 16 12 H 0.04 1.84 7.89 -2.39 -0.02 1.82 16 13 C -0.13 -3.89 5.10 30.62 0.16 -3.74 16 14 C -0.12 -2.46 6.08 30.67 0.19 -2.28 16 15 C 0.10 1.80 5.82 86.36 0.50 2.31 16 16 N -0.61 -17.11 2.97 -818.93 -2.43 -19.55 16 17 C 0.51 15.73 6.14 87.65 0.54 16.26 16 18 O -0.57 -23.85 13.94 -3.03 -0.04 -23.89 16 19 C 0.08 1.77 1.38 44.19 0.06 1.83 16 20 H 0.09 1.39 6.80 -2.39 -0.02 1.37 16 21 C -0.11 -2.04 5.09 30.64 0.16 -1.89 16 22 C -0.11 -1.34 6.00 30.67 0.18 -1.16 16 23 C -0.12 -1.54 6.09 30.64 0.19 -1.35 16 24 C 0.06 0.85 5.46 86.32 0.47 1.32 16 25 N -0.55 -12.51 4.51 -901.62 -4.06 -16.58 16 26 C 0.02 0.48 9.10 127.69 1.16 1.64 16 27 C 0.12 4.16 5.79 86.36 0.50 4.66 16 28 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 2.25 6.47 -2.39 -0.02 2.23 16 30 H 0.03 1.41 4.06 -2.38 -0.01 1.40 16 31 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 32 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.07 1.95 6.74 -2.39 -0.02 1.94 16 34 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.11 1.34 4.75 -2.39 -0.01 1.33 16 38 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.09 1.39 6.88 -2.39 -0.02 1.37 16 40 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 44 H 0.08 1.15 8.08 -2.39 -0.02 1.13 16 45 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.05 1.66 5.63 -2.39 -0.01 1.65 16 47 H 0.08 1.58 8.09 -2.39 -0.02 1.56 16 48 H 0.03 0.65 8.14 -2.39 -0.02 0.64 16 49 H 0.07 2.42 7.51 -2.39 -0.02 2.40 16 50 H 0.05 2.16 7.00 -2.39 -0.02 2.14 16 Total: -1.00 -78.35 366.08 1.32 -77.03 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 0.86 Total: 13.00 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 6.56 Total: 14.10 kcal Atomic # 7 Polarization: -119.90 SS G_CDS: -7.81 Total: -127.70 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.04 Total: -23.89 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.73 Total: 47.46 kcal Total: -78.35 1.32 -77.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027464441.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.762 kcal (2) G-P(sol) polarization free energy of solvation -78.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds