Wall clock time and date at job start Tue Mar 31 2020 09:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.91568 * 2 1 4 4 C 1.54912 * 111.00325 * 236.09672 * 2 1 3 5 5 N 1.47424 * 104.83310 * 204.91720 * 4 2 1 6 6 C 1.34775 * 125.64809 * 204.16705 * 5 4 2 7 7 O 1.21277 * 120.00068 * 354.83603 * 6 5 4 8 8 C 1.50697 * 119.99930 * 174.83412 * 6 5 4 9 9 C 1.52998 * 109.47118 * 159.46299 * 8 6 5 10 10 C 1.52995 * 109.47501 * 279.46528 * 8 6 5 11 11 N 1.46900 * 109.47226 * 39.46525 * 8 6 5 12 12 C 1.48539 * 111.00016 * 64.01820 * 11 8 6 13 13 C 1.54930 * 103.23019 * 159.72548 * 12 11 8 14 14 C 1.54597 * 102.92030 * 322.58508 * 13 12 11 15 15 C 1.47899 * 111.00353 * 181.41527 * 11 8 6 16 16 C 1.47021 * 108.70343 * 24.12929 * 5 4 2 17 17 C 1.54331 * 107.26931 * 358.94129 * 16 5 4 18 18 H 1.09002 * 110.71523 * 219.44262 * 17 16 5 19 19 N 1.46500 * 110.71783 * 96.34509 * 17 16 5 20 20 C 1.36941 * 119.99796 * 88.84500 * 19 17 16 21 21 H 1.08005 * 119.99958 * 359.97438 * 20 19 17 22 22 C 1.38815 * 119.99819 * 179.97438 * 20 19 17 23 23 N 1.31619 * 120.00255 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99647 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47302 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.46757 * 120.00058 * 24 22 20 27 27 H 1.48504 * 109.46932 * 239.99712 * 24 22 20 28 28 H 1.08995 * 109.47391 * 296.09570 * 1 2 3 29 29 H 1.09004 * 109.47156 * 56.09500 * 1 2 3 30 30 H 1.09005 * 109.47175 * 176.09448 * 1 2 3 31 31 H 1.09007 * 110.36195 * 86.07809 * 4 2 1 32 32 H 1.08998 * 110.46114 * 323.80396 * 4 2 1 33 33 H 1.09001 * 109.46929 * 59.65635 * 9 8 6 34 34 H 1.09005 * 109.47489 * 179.65813 * 9 8 6 35 35 H 1.09007 * 109.47594 * 299.65536 * 9 8 6 36 36 H 1.09000 * 109.47067 * 59.99921 * 10 8 6 37 37 H 1.08995 * 109.47470 * 180.02562 * 10 8 6 38 38 H 1.09004 * 109.47280 * 300.00004 * 10 8 6 39 39 H 1.09006 * 110.66657 * 278.15910 * 12 11 8 40 40 H 1.08997 * 110.66746 * 41.28477 * 12 11 8 41 41 H 1.08999 * 110.72827 * 204.22925 * 13 12 11 42 42 H 1.09003 * 110.87756 * 81.00910 * 13 12 11 43 43 H 1.08998 * 110.31178 * 263.04536 * 14 13 12 44 44 H 1.08995 * 110.31324 * 140.87095 * 14 13 12 45 45 H 1.08998 * 109.91280 * 333.50639 * 15 11 8 46 46 H 1.08994 * 109.91856 * 94.80141 * 15 11 8 47 47 H 1.08998 * 109.87995 * 239.52448 * 16 5 4 48 48 H 1.09000 * 109.88356 * 118.35688 * 16 5 4 49 49 H 0.97002 * 120.00094 * 268.84021 * 19 17 16 50 50 H 0.96995 * 120.00216 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0852 -0.8067 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4480 -1.5603 -1.5940 7 8 4.2751 -1.5885 -2.7941 8 6 5.8044 -1.8800 -1.0205 9 6 6.6152 -2.6785 -2.0431 10 6 6.5387 -0.5786 -0.6916 11 7 5.6433 -2.6743 0.2046 12 6 5.0196 -3.9894 -0.0919 13 6 5.4062 -4.8503 1.1368 14 6 6.8436 -4.3766 1.4523 15 6 6.9554 -2.9789 0.8153 16 6 3.4674 -1.2742 0.6960 17 6 2.0861 -0.8080 1.2022 18 1 2.1922 -0.1700 2.0796 19 7 1.2282 -1.9575 1.5001 20 6 1.2490 -2.5224 2.7474 21 1 1.8982 -2.1206 3.5114 22 6 0.4357 -3.6113 3.0298 23 7 -0.3558 -4.1006 2.0990 24 14 0.4647 -4.3822 4.7311 25 1 1.4324 -3.6523 5.5889 26 1 -0.8901 -4.3024 5.3338 27 1 0.8751 -5.8053 4.6228 28 1 -0.3634 0.4520 0.9228 29 1 -0.3634 0.5733 -0.8529 30 1 -0.3634 -1.0253 -0.0700 31 1 2.1559 -0.1719 -2.0837 32 1 1.4524 -1.6704 -1.4043 33 1 6.7296 -2.0915 -2.9544 34 1 7.5986 -2.9045 -1.6307 35 1 6.0952 -3.6086 -2.2729 36 1 5.9610 -0.0097 0.0370 37 1 7.5199 -0.8098 -0.2772 38 1 6.6583 0.0109 -1.6006 39 1 3.9365 -3.8930 -0.1685 40 1 5.4346 -4.4148 -1.0056 41 1 5.3964 -5.9104 0.8836 42 1 4.7410 -4.6496 1.9767 43 1 7.5717 -5.0545 1.0069 44 1 6.9935 -4.3141 2.5301 45 1 7.7302 -2.9811 0.0487 46 1 7.1891 -2.2395 1.5812 47 1 4.2426 -0.5998 1.0598 48 1 3.6650 -2.2895 1.0400 49 1 0.6454 -2.3185 0.8138 50 1 -0.9243 -4.8612 2.2964 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054967970.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:41 Heat of formation + Delta-G solvation = -1.192117 kcal Electronic energy + Delta-G solvation = -28631.535634 eV Core-core repulsion = 25080.460154 eV Total energy + Delta-G solvation = -3551.075480 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.63488 -38.61697 -37.42076 -34.19803 -33.82106 -32.18996 -30.39629 -29.34267 -28.76178 -27.56477 -27.37293 -26.16011 -23.86244 -23.26787 -21.86170 -20.94006 -20.05410 -19.15853 -18.31087 -17.47971 -16.94642 -15.99833 -15.57906 -15.27755 -14.91579 -14.49649 -14.29576 -14.03528 -13.76372 -13.52366 -13.11329 -13.01217 -12.85676 -12.65622 -12.37063 -12.21231 -11.99420 -11.90277 -11.71626 -11.62369 -11.51639 -11.31613 -11.14550 -11.09634 -11.02956 -10.90728 -10.87368 -10.66810 -10.33984 -10.25203 -10.18588 -9.83951 -9.59770 -9.39072 -8.95280 -8.26214 -8.01130 -6.97118 -5.78245 -3.06553 2.92470 3.41315 3.45311 3.47906 3.49690 3.96327 4.57508 4.59385 4.72327 4.91808 4.93339 4.98650 5.07221 5.23256 5.33121 5.34337 5.43706 5.51146 5.54672 5.62631 5.65021 5.67477 5.72793 5.78636 5.80248 5.87861 5.93174 5.95555 6.00656 6.05313 6.13050 6.14982 6.23952 6.29140 6.33243 6.40083 6.42965 6.45421 6.53363 6.75383 6.79790 6.92385 6.99645 7.04050 7.13642 7.70736 8.06638 8.39939 8.56554 9.51896 10.08423 10.43423 11.44226 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.012195 B = 0.006124 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.416958 B = 4571.419715 C = 6150.423202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.115 4.115 3 H 0.075 0.925 4 C 0.113 3.887 5 N -0.593 5.593 6 C 0.540 3.460 7 O -0.561 6.561 8 C 0.085 3.915 9 C -0.168 4.168 10 C -0.134 4.134 11 N -0.492 5.492 12 C 0.024 3.976 13 C -0.121 4.121 14 C -0.129 4.129 15 C 0.031 3.969 16 C 0.086 3.914 17 C 0.166 3.834 18 H 0.066 0.934 19 N -0.711 5.711 20 C -0.235 4.235 21 H 0.071 0.929 22 C -0.010 4.010 23 N -0.931 5.931 24 Si 0.902 3.098 25 H -0.280 1.280 26 H -0.293 1.293 27 H -0.293 1.293 28 H 0.059 0.941 29 H 0.042 0.958 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.091 0.909 40 H 0.049 0.951 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.049 0.951 46 H 0.078 0.922 47 H 0.051 0.949 48 H 0.100 0.900 49 H 0.385 0.615 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.783 5.011 -3.993 15.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.135 4.135 3 H 0.094 0.906 4 C -0.009 4.009 5 N -0.324 5.324 6 C 0.327 3.673 7 O -0.440 6.440 8 C -0.008 4.008 9 C -0.227 4.227 10 C -0.192 4.192 11 N -0.217 5.217 12 C -0.103 4.103 13 C -0.159 4.159 14 C -0.167 4.167 15 C -0.096 4.096 16 C -0.039 4.039 17 C 0.054 3.946 18 H 0.084 0.916 19 N -0.352 5.352 20 C -0.366 4.366 21 H 0.089 0.911 22 C -0.206 4.206 23 N -0.579 5.579 24 Si 0.734 3.266 25 H -0.206 1.206 26 H -0.220 1.220 27 H -0.220 1.220 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.110 0.890 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.067 0.933 46 H 0.097 0.903 47 H 0.069 0.931 48 H 0.118 0.882 49 H 0.221 0.779 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.427 5.244 -4.120 14.992 hybrid contribution 0.335 -1.127 0.174 1.189 sum 13.761 4.116 -3.946 14.896 Atomic orbital electron populations 1.21529 0.93579 1.02867 1.00747 1.22616 0.96762 0.98368 0.95768 0.90628 1.22250 0.83457 0.98139 0.97068 1.48356 1.11065 1.64411 1.08533 1.19841 0.84866 0.76934 0.85694 1.90654 1.83826 1.54478 1.15080 1.21274 0.93095 0.95913 0.90488 1.22277 0.99507 1.01212 0.99658 1.21800 1.00054 0.95117 1.02239 1.65279 1.18811 1.15674 1.21985 1.23434 1.01236 0.88408 0.97229 1.22446 0.96089 0.98701 0.98655 1.22382 0.97459 0.95704 1.01161 1.22942 0.91048 0.97104 0.98518 1.23376 0.99060 1.03935 0.77542 1.21330 0.89216 0.89708 0.94372 0.91594 1.42416 1.47275 1.32989 1.12552 1.19258 1.18966 1.09361 0.89054 0.91079 1.24691 0.99398 0.99016 0.97513 1.69662 1.28929 1.26992 1.32353 0.86189 0.77169 0.79042 0.84212 1.20562 1.22024 1.22022 0.92221 0.93925 0.91258 0.91782 0.91495 0.91029 0.91814 0.91681 0.91119 0.91568 0.91883 0.89033 0.93269 0.91396 0.89762 0.92026 0.91054 0.93280 0.90324 0.93058 0.88204 0.77937 0.93611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 8.85 37.16 0.33 -1.76 16 2 C -0.12 -1.84 3.51 -88.47 -0.31 -2.15 16 3 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.11 1.94 6.34 -2.53 -0.02 1.92 16 5 N -0.59 -10.21 3.33 -170.52 -0.57 -10.78 16 6 C 0.54 9.35 5.92 -10.99 -0.07 9.29 16 7 O -0.56 -11.35 16.33 5.56 0.09 -11.26 16 8 C 0.09 1.18 0.37 -132.76 -0.05 1.13 16 9 C -0.17 -2.14 7.29 37.16 0.27 -1.86 16 10 C -0.13 -1.56 8.32 37.15 0.31 -1.25 16 11 N -0.49 -6.70 2.51 -216.19 -0.54 -7.24 16 12 C 0.02 0.36 4.92 -1.90 -0.01 0.35 16 13 C -0.12 -1.63 7.06 -24.87 -0.18 -1.80 16 14 C -0.13 -1.41 6.93 -25.37 -0.18 -1.59 16 15 C 0.03 0.35 5.15 -2.75 -0.01 0.34 16 16 C 0.09 1.48 5.12 -3.06 -0.02 1.47 16 17 C 0.17 3.07 3.37 -66.09 -0.22 2.85 16 18 H 0.07 1.22 8.11 -51.93 -0.42 0.80 16 19 N -0.71 -16.34 4.57 -51.65 -0.24 -16.58 16 20 C -0.24 -6.06 9.97 -15.06 -0.15 -6.21 16 21 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 22 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 23 N -0.93 -26.94 13.06 55.49 0.72 -26.22 16 24 Si 0.90 21.58 29.55 -169.99 -5.02 16.55 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 1.29 6.44 -51.93 -0.33 0.96 16 31 H 0.06 1.06 8.09 -51.92 -0.42 0.64 16 32 H 0.07 1.26 7.99 -51.93 -0.41 0.84 16 33 H 0.07 0.94 7.88 -51.93 -0.41 0.53 16 34 H 0.06 0.67 6.07 -51.93 -0.32 0.36 16 35 H 0.06 0.90 5.97 -51.93 -0.31 0.59 16 36 H 0.07 0.85 6.95 -51.93 -0.36 0.49 16 37 H 0.07 0.64 6.97 -51.93 -0.36 0.28 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 1.68 7.21 -51.93 -0.37 1.31 16 40 H 0.05 0.71 5.51 -51.93 -0.29 0.42 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.05 0.50 5.31 -51.93 -0.28 0.22 16 46 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.05 0.82 6.95 -51.93 -0.36 0.46 16 48 H 0.10 1.94 5.20 -51.93 -0.27 1.67 16 49 H 0.39 9.60 6.22 -40.82 -0.25 9.35 16 50 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 369.59 15.07 5.57 5.57 Total: -1.00 -29.19 369.59 -8.90 -38.09 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -8.52 Total: 11.52 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -0.39 Total: 0.34 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: -0.62 Total: -60.82 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.19 -8.90 -38.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054967970.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.896 kcal (2) G-P(sol) polarization free energy of solvation -29.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds