Wall clock time and date at job start Tue Mar 31 2020 09:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.91568 * 2 1 4 4 C 1.54912 * 111.00325 * 236.09672 * 2 1 3 5 5 N 1.47424 * 104.83310 * 204.91720 * 4 2 1 6 6 C 1.34775 * 125.64809 * 204.16705 * 5 4 2 7 7 O 1.21277 * 120.00068 * 354.83603 * 6 5 4 8 8 C 1.50697 * 119.99930 * 174.83412 * 6 5 4 9 9 C 1.52998 * 109.47118 * 159.46299 * 8 6 5 10 10 C 1.52995 * 109.47501 * 279.46528 * 8 6 5 11 11 N 1.46900 * 109.47226 * 39.46525 * 8 6 5 12 12 C 1.48539 * 111.00016 * 64.01820 * 11 8 6 13 13 C 1.54930 * 103.23019 * 159.72548 * 12 11 8 14 14 C 1.54597 * 102.92030 * 322.58508 * 13 12 11 15 15 C 1.47899 * 111.00353 * 181.41527 * 11 8 6 16 16 C 1.47021 * 108.70343 * 24.12929 * 5 4 2 17 17 C 1.54331 * 107.26931 * 358.94129 * 16 5 4 18 18 H 1.09002 * 110.71523 * 219.44262 * 17 16 5 19 19 N 1.46500 * 110.71783 * 96.34509 * 17 16 5 20 20 C 1.36941 * 119.99796 * 88.84500 * 19 17 16 21 21 H 1.08005 * 119.99958 * 359.97438 * 20 19 17 22 22 C 1.38815 * 119.99819 * 179.97438 * 20 19 17 23 23 N 1.31619 * 120.00255 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99647 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47302 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.46757 * 120.00058 * 24 22 20 27 27 H 1.48504 * 109.46932 * 239.99712 * 24 22 20 28 28 H 1.08995 * 109.47391 * 296.09570 * 1 2 3 29 29 H 1.09004 * 109.47156 * 56.09500 * 1 2 3 30 30 H 1.09005 * 109.47175 * 176.09448 * 1 2 3 31 31 H 1.09007 * 110.36195 * 86.07809 * 4 2 1 32 32 H 1.08998 * 110.46114 * 323.80396 * 4 2 1 33 33 H 1.09001 * 109.46929 * 59.65635 * 9 8 6 34 34 H 1.09005 * 109.47489 * 179.65813 * 9 8 6 35 35 H 1.09007 * 109.47594 * 299.65536 * 9 8 6 36 36 H 1.09000 * 109.47067 * 59.99921 * 10 8 6 37 37 H 1.08995 * 109.47470 * 180.02562 * 10 8 6 38 38 H 1.09004 * 109.47280 * 300.00004 * 10 8 6 39 39 H 1.09006 * 110.66657 * 278.15910 * 12 11 8 40 40 H 1.08997 * 110.66746 * 41.28477 * 12 11 8 41 41 H 1.08999 * 110.72827 * 204.22925 * 13 12 11 42 42 H 1.09003 * 110.87756 * 81.00910 * 13 12 11 43 43 H 1.08998 * 110.31178 * 263.04536 * 14 13 12 44 44 H 1.08995 * 110.31324 * 140.87095 * 14 13 12 45 45 H 1.08998 * 109.91280 * 333.50639 * 15 11 8 46 46 H 1.08994 * 109.91856 * 94.80141 * 15 11 8 47 47 H 1.08998 * 109.87995 * 239.52448 * 16 5 4 48 48 H 1.09000 * 109.88356 * 118.35688 * 16 5 4 49 49 H 0.97002 * 120.00094 * 268.84021 * 19 17 16 50 50 H 0.96995 * 120.00216 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0852 -0.8067 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4480 -1.5603 -1.5940 7 8 4.2751 -1.5885 -2.7941 8 6 5.8044 -1.8800 -1.0205 9 6 6.6152 -2.6785 -2.0431 10 6 6.5387 -0.5786 -0.6916 11 7 5.6433 -2.6743 0.2046 12 6 5.0196 -3.9894 -0.0919 13 6 5.4062 -4.8503 1.1368 14 6 6.8436 -4.3766 1.4523 15 6 6.9554 -2.9789 0.8153 16 6 3.4674 -1.2742 0.6960 17 6 2.0861 -0.8080 1.2022 18 1 2.1922 -0.1700 2.0796 19 7 1.2282 -1.9575 1.5001 20 6 1.2490 -2.5224 2.7474 21 1 1.8982 -2.1206 3.5114 22 6 0.4357 -3.6113 3.0298 23 7 -0.3558 -4.1006 2.0990 24 14 0.4647 -4.3822 4.7311 25 1 1.4324 -3.6523 5.5889 26 1 -0.8901 -4.3024 5.3338 27 1 0.8751 -5.8053 4.6228 28 1 -0.3634 0.4520 0.9228 29 1 -0.3634 0.5733 -0.8529 30 1 -0.3634 -1.0253 -0.0700 31 1 2.1559 -0.1719 -2.0837 32 1 1.4524 -1.6704 -1.4043 33 1 6.7296 -2.0915 -2.9544 34 1 7.5986 -2.9045 -1.6307 35 1 6.0952 -3.6086 -2.2729 36 1 5.9610 -0.0097 0.0370 37 1 7.5199 -0.8098 -0.2772 38 1 6.6583 0.0109 -1.6006 39 1 3.9365 -3.8930 -0.1685 40 1 5.4346 -4.4148 -1.0056 41 1 5.3964 -5.9104 0.8836 42 1 4.7410 -4.6496 1.9767 43 1 7.5717 -5.0545 1.0069 44 1 6.9935 -4.3141 2.5301 45 1 7.7302 -2.9811 0.0487 46 1 7.1891 -2.2395 1.5812 47 1 4.2426 -0.5998 1.0598 48 1 3.6650 -2.2895 1.0400 49 1 0.6454 -2.3185 0.8138 50 1 -0.9243 -4.8612 2.2964 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054967970.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:40 Heat of formation + Delta-G solvation = -18.700434 kcal Electronic energy + Delta-G solvation = -28632.294851 eV Core-core repulsion = 25080.460154 eV Total energy + Delta-G solvation = -3551.834697 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.87466 -39.89280 -38.84049 -35.63353 -35.28099 -33.74053 -32.16479 -30.33630 -29.81269 -29.20123 -28.42137 -27.43703 -25.71683 -24.56342 -23.18552 -22.10645 -21.12757 -20.63938 -19.63755 -19.22307 -18.26529 -17.33487 -16.93308 -16.61157 -16.25902 -16.04502 -15.76099 -15.33728 -15.05869 -14.82152 -14.63531 -14.32530 -14.13101 -13.96804 -13.63950 -13.36214 -13.25576 -13.08835 -12.95160 -12.90177 -12.85548 -12.77625 -12.59919 -12.44442 -12.29082 -12.18075 -12.14280 -12.03642 -11.93299 -11.83818 -11.40270 -11.33003 -11.28051 -10.94054 -10.71048 -9.53112 -9.28251 -8.90104 -7.86362 -5.12860 1.50148 1.51470 1.57241 1.60290 2.13152 2.61556 2.89503 3.40211 3.46945 3.68944 3.72185 3.85071 3.95115 4.00582 4.02021 4.04558 4.13320 4.16008 4.29520 4.49544 4.57390 4.59939 4.60198 4.63653 4.71864 4.76745 4.77353 4.81234 4.85861 4.92719 4.94854 4.99159 5.05766 5.10242 5.10525 5.19043 5.20594 5.28811 5.32881 5.36814 5.40358 5.55457 5.62007 5.66588 5.87097 6.00459 6.35094 6.67866 7.18240 7.42554 8.17733 8.41096 9.37447 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.012195 B = 0.006124 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.416958 B = 4571.419715 C = 6150.423202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.099 4.099 3 H 0.107 0.893 4 C 0.113 3.887 5 N -0.594 5.594 6 C 0.532 3.468 7 O -0.596 6.596 8 C 0.088 3.912 9 C -0.162 4.162 10 C -0.129 4.129 11 N -0.500 5.500 12 C 0.029 3.971 13 C -0.121 4.121 14 C -0.120 4.120 15 C 0.031 3.969 16 C 0.103 3.897 17 C 0.156 3.844 18 H 0.075 0.925 19 N -0.720 5.720 20 C -0.221 4.221 21 H 0.079 0.921 22 C -0.072 4.072 23 N -0.971 5.971 24 Si 0.961 3.039 25 H -0.263 1.263 26 H -0.300 1.300 27 H -0.301 1.301 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.036 0.964 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.047 0.953 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.065 0.935 39 H 0.045 0.955 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.068 0.932 46 H 0.092 0.908 47 H 0.074 0.926 48 H 0.078 0.922 49 H 0.373 0.627 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.748 6.592 -3.071 18.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.119 4.119 3 H 0.125 0.875 4 C -0.010 4.010 5 N -0.324 5.324 6 C 0.321 3.679 7 O -0.477 6.477 8 C -0.005 4.005 9 C -0.221 4.221 10 C -0.186 4.186 11 N -0.226 5.226 12 C -0.099 4.099 13 C -0.159 4.159 14 C -0.158 4.158 15 C -0.095 4.095 16 C -0.022 4.022 17 C 0.046 3.954 18 H 0.093 0.907 19 N -0.359 5.359 20 C -0.353 4.353 21 H 0.097 0.903 22 C -0.264 4.264 23 N -0.622 5.622 24 Si 0.792 3.208 25 H -0.187 1.187 26 H -0.228 1.228 27 H -0.229 1.229 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.086 0.914 46 H 0.110 0.890 47 H 0.092 0.908 48 H 0.096 0.904 49 H 0.206 0.794 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 16.440 6.872 -3.173 18.099 hybrid contribution -0.578 -1.571 -0.179 1.683 sum 15.861 5.301 -3.352 17.057 Atomic orbital electron populations 1.21450 0.93659 1.01180 1.01796 1.22569 0.96581 0.99185 0.93556 0.87490 1.22212 0.83365 0.97398 0.98038 1.48442 1.11124 1.64310 1.08573 1.20626 0.86133 0.75865 0.85324 1.90628 1.84642 1.55859 1.16602 1.21322 0.91039 0.97405 0.90781 1.22243 1.00470 1.00030 0.99331 1.21800 1.00917 0.93489 1.02427 1.65214 1.20646 1.14832 1.21868 1.23237 0.98636 0.89830 0.98153 1.22387 0.97630 0.98964 0.96901 1.22365 0.95577 0.95945 1.01923 1.23057 0.89867 0.97461 0.99148 1.23069 0.98591 1.03073 0.77475 1.21581 0.89309 0.88688 0.95848 0.90686 1.42550 1.47820 1.34120 1.11432 1.19615 1.17308 1.08395 0.89966 0.90269 1.25375 1.00158 1.00311 1.00587 1.69821 1.30503 1.27704 1.34204 0.85235 0.76884 0.77797 0.80872 1.18724 1.22790 1.22880 0.92423 0.91285 0.94536 0.90942 0.94274 0.91590 0.88872 0.93433 0.91455 0.88833 0.91645 0.93637 0.92859 0.90764 0.92589 0.90004 0.90252 0.91362 0.88987 0.90777 0.90423 0.79413 0.94509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.91 8.85 71.98 0.64 -3.27 16 2 C -0.10 -3.06 3.51 -9.40 -0.03 -3.09 16 3 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 4 C 0.11 3.88 6.34 86.86 0.55 4.43 16 5 N -0.59 -20.38 3.33 -811.78 -2.70 -23.08 16 6 C 0.53 18.28 5.92 87.66 0.52 18.80 16 7 O -0.60 -24.33 16.33 -3.02 -0.05 -24.38 16 8 C 0.09 2.26 0.37 2.78 0.00 2.26 16 9 C -0.16 -3.81 7.29 71.98 0.52 -3.28 16 10 C -0.13 -2.55 8.32 71.98 0.60 -1.95 16 11 N -0.50 -12.81 2.51 -837.89 -2.10 -14.92 16 12 C 0.03 0.88 4.92 86.65 0.43 1.30 16 13 C -0.12 -3.21 7.06 31.80 0.22 -2.99 16 14 C -0.12 -2.29 6.93 31.48 0.22 -2.07 16 15 C 0.03 0.59 5.15 86.45 0.45 1.03 16 16 C 0.10 3.46 5.12 86.73 0.44 3.91 16 17 C 0.16 5.66 3.37 46.18 0.16 5.81 16 18 H 0.08 2.63 8.11 -2.39 -0.02 2.61 16 19 N -0.72 -33.72 4.57 -317.31 -1.45 -35.17 16 20 C -0.22 -11.47 9.97 84.03 0.84 -10.63 16 21 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 22 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 23 N -0.97 -58.36 13.06 21.65 0.28 -58.08 16 24 Si 0.96 45.08 29.55 68.60 2.03 47.11 16 25 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 26 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 27 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 28 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.04 1.40 6.44 -2.38 -0.02 1.38 16 31 H 0.07 2.36 8.09 -2.38 -0.02 2.35 16 32 H 0.04 1.55 7.99 -2.39 -0.02 1.53 16 33 H 0.07 1.63 7.88 -2.39 -0.02 1.61 16 34 H 0.09 1.61 6.07 -2.38 -0.01 1.60 16 35 H 0.05 1.28 5.97 -2.38 -0.01 1.26 16 36 H 0.07 1.39 6.95 -2.39 -0.02 1.37 16 37 H 0.09 1.35 6.97 -2.39 -0.02 1.34 16 38 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.05 1.78 7.21 -2.38 -0.02 1.76 16 40 H 0.05 1.54 5.51 -2.39 -0.01 1.53 16 41 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.07 1.04 5.31 -2.39 -0.01 1.03 16 46 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.07 2.18 6.95 -2.39 -0.02 2.16 16 48 H 0.08 3.04 5.20 -2.39 -0.01 3.03 16 49 H 0.37 19.42 6.22 -92.71 -0.58 18.85 16 50 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -65.75 369.59 2.37 -63.37 By element: Atomic # 1 Polarization: 38.08 SS G_CDS: 0.35 Total: 38.43 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 6.02 Total: 6.72 kcal Atomic # 7 Polarization: -125.28 SS G_CDS: -5.97 Total: -131.25 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.05 Total: -24.38 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -65.75 2.37 -63.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054967970.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.674 kcal (2) G-P(sol) polarization free energy of solvation -65.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds