Wall clock time and date at job start Tue Mar 31 2020 09:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46854 * 110.99648 * 2 1 4 4 C 1.53037 * 109.52285 * 185.80147 * 3 2 1 5 5 C 1.53114 * 109.31211 * 300.88400 * 4 3 2 6 6 C 1.53125 * 109.16368 * 57.63311 * 5 4 3 7 7 C 1.46840 * 111.00367 * 124.25439 * 2 1 3 8 8 H 1.09005 * 109.46534 * 294.17986 * 7 2 1 9 9 C 1.50708 * 109.45615 * 54.14812 * 7 2 1 10 10 O 1.21284 * 119.99135 * 20.04852 * 9 7 2 11 11 N 1.34773 * 120.00253 * 200.05301 * 9 7 2 12 12 C 1.46502 * 119.99620 * 180.02562 * 11 9 7 13 13 H 1.08996 * 109.47309 * 35.00002 * 12 11 9 14 14 C 1.52995 * 109.46990 * 274.99458 * 12 11 9 15 15 C 1.53002 * 109.47391 * 180.02562 * 14 12 11 16 16 C 1.52994 * 109.47209 * 60.00058 * 15 14 12 17 17 C 1.53003 * 109.47118 * 300.00270 * 16 15 14 18 18 C 1.53002 * 109.47301 * 59.99786 * 17 16 15 19 19 H 1.09009 * 109.46979 * 59.99758 * 18 17 16 20 20 N 1.46497 * 109.47559 * 179.97438 * 18 17 16 21 21 C 1.36932 * 120.00073 * 275.00576 * 20 18 17 22 22 H 1.08001 * 120.00131 * 359.97438 * 21 20 18 23 23 C 1.38819 * 120.00035 * 179.97438 * 21 20 18 24 24 N 1.31623 * 119.99788 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00097 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47258 * 59.99975 * 25 23 21 27 27 H 1.48501 * 109.47270 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47501 * 299.99643 * 25 23 21 29 29 H 1.08999 * 109.47502 * 295.74346 * 1 2 3 30 30 H 1.08996 * 109.47397 * 55.74738 * 1 2 3 31 31 H 1.09003 * 109.47015 * 175.74892 * 1 2 3 32 32 H 1.09000 * 109.42692 * 65.80880 * 3 2 1 33 33 H 1.09000 * 109.49358 * 305.83873 * 3 2 1 34 34 H 1.09002 * 109.50283 * 180.92217 * 4 3 2 35 35 H 1.09003 * 109.50113 * 60.84405 * 4 3 2 36 36 H 1.08998 * 109.52405 * 177.54026 * 5 4 3 37 37 H 1.09007 * 109.52681 * 297.73305 * 5 4 3 38 38 H 1.09005 * 109.49488 * 62.28510 * 6 5 4 39 39 H 1.08998 * 109.50244 * 182.36576 * 6 5 4 40 40 H 0.96999 * 120.00062 * 359.97438 * 11 9 7 41 41 H 1.09009 * 109.47433 * 300.00703 * 14 12 11 42 42 H 1.08997 * 109.47234 * 60.00310 * 14 12 11 43 43 H 1.09001 * 109.47139 * 180.02562 * 15 14 12 44 44 H 1.08997 * 109.46692 * 299.99850 * 15 14 12 45 45 H 1.09001 * 109.47200 * 59.99826 * 16 15 14 46 46 H 1.09001 * 109.47173 * 180.02562 * 16 15 14 47 47 H 1.08997 * 109.47456 * 180.02562 * 17 16 15 48 48 H 1.08997 * 109.46948 * 300.00310 * 17 16 15 49 49 H 0.96997 * 119.99907 * 94.99723 * 20 18 17 50 50 H 0.96993 * 119.99919 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9951 1.3710 0.0000 4 6 3.5181 1.3343 -0.1458 5 6 4.1188 0.5362 1.0147 6 6 3.5181 -0.8723 1.0201 7 6 1.9953 -0.7716 1.1331 8 1 1.7325 -0.2725 2.0658 9 6 1.3982 -2.1553 1.1187 10 8 0.9173 -2.5975 0.0968 11 7 1.3986 -2.9012 2.2412 12 6 0.8187 -4.2464 2.2269 13 1 1.0064 -4.7128 1.2598 14 6 -0.6899 -4.1540 2.4644 15 6 -1.2955 -5.5589 2.4501 16 6 -0.6560 -6.4013 3.5557 17 6 0.8527 -6.4938 3.3182 18 6 1.4583 -5.0888 3.3325 19 1 1.2706 -4.6220 4.2995 20 7 2.9029 -5.1773 3.1057 21 6 3.7481 -5.4100 4.1577 22 1 3.3498 -5.5278 5.1546 23 6 5.1170 -5.4944 3.9427 24 7 5.6024 -5.3513 2.7277 25 14 6.2700 -5.8111 5.3778 26 1 5.9258 -7.1088 6.0124 27 1 7.6707 -5.8569 4.8867 28 1 6.1302 -4.7199 6.3753 29 1 -0.3634 0.4463 0.9256 30 1 -0.3634 0.5784 -0.8494 31 1 -0.3633 -1.0249 -0.0762 32 1 1.7318 1.8604 0.9377 33 1 1.5638 1.9262 -0.8330 34 1 3.9099 2.3514 -0.1293 35 1 3.7819 0.8580 -1.0901 36 1 5.1997 0.4708 0.8907 37 1 3.8887 1.0339 1.9568 38 1 3.7814 -1.3836 0.0942 39 1 3.9105 -1.4319 1.8692 40 1 1.7835 -2.5475 3.0583 41 1 -0.8776 -3.6875 3.4316 42 1 -1.1455 -3.5536 1.6770 43 1 -2.3704 -5.4930 2.6189 44 1 -1.1079 -6.0256 1.4831 45 1 -0.8436 -5.9345 4.5226 46 1 -1.0871 -7.4023 3.5452 47 1 1.3083 -7.0942 4.1055 48 1 1.0403 -6.9604 2.3512 49 1 3.2607 -5.0713 2.2104 50 1 6.5588 -5.4099 2.5775 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085245200.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:52 Heat of formation + Delta-G solvation = -40.385270 kcal Electronic energy + Delta-G solvation = -27593.520294 eV Core-core repulsion = 24040.745272 eV Total energy + Delta-G solvation = -3552.775022 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.23516 -38.66057 -37.21012 -34.05595 -33.85550 -33.24544 -31.29863 -31.09752 -29.15579 -27.69156 -26.69320 -24.06165 -23.69168 -22.86546 -21.88305 -21.05586 -20.11255 -19.82032 -19.20611 -17.30138 -16.78745 -16.15355 -15.44093 -15.08773 -14.78494 -14.69134 -14.33678 -14.17777 -14.01841 -13.73514 -13.50402 -13.29452 -12.96251 -12.94234 -12.79914 -12.52749 -12.28507 -12.07610 -11.90496 -11.61776 -11.29970 -11.08298 -10.93204 -10.84465 -10.82037 -10.74162 -10.65032 -10.52183 -10.35089 -10.32480 -10.19545 -9.73984 -9.63276 -9.20932 -8.90403 -8.52069 -8.25276 -6.99037 -5.78428 -3.08120 3.00673 3.39158 3.40912 3.45871 3.46848 4.04247 4.54689 4.79492 4.83020 4.94127 5.07054 5.10532 5.18407 5.18918 5.25528 5.35720 5.43242 5.51477 5.52324 5.54447 5.55412 5.67199 5.71960 5.74830 5.83404 5.89820 5.92024 5.96752 5.98509 6.02152 6.11332 6.12539 6.16239 6.26462 6.33355 6.45972 6.47037 6.49300 6.52924 6.59256 6.87184 6.93199 6.98877 7.09916 7.13166 7.66161 7.99079 8.38671 8.67496 9.50407 10.07026 10.42571 11.43273 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.010323 B = 0.005341 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.662280 B = 5240.950725 C = 7601.149147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.520 5.520 3 C 0.058 3.942 4 C -0.119 4.119 5 C -0.118 4.118 6 C -0.108 4.108 7 C 0.074 3.926 8 H 0.055 0.945 9 C 0.519 3.481 10 O -0.532 6.532 11 N -0.707 5.707 12 C 0.142 3.858 13 H 0.083 0.917 14 C -0.123 4.123 15 C -0.113 4.113 16 C -0.119 4.119 17 C -0.133 4.133 18 C 0.173 3.827 19 H 0.049 0.951 20 N -0.721 5.721 21 C -0.241 4.241 22 H 0.069 0.931 23 C -0.009 4.009 24 N -0.928 5.928 25 Si 0.904 3.096 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.287 1.287 29 H 0.016 0.984 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.030 0.970 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.401 0.599 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.065 0.935 48 H 0.057 0.943 49 H 0.385 0.615 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.752 11.117 -1.736 15.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.245 5.245 3 C -0.070 4.070 4 C -0.157 4.157 5 C -0.156 4.156 6 C -0.146 4.146 7 C -0.038 4.038 8 H 0.073 0.927 9 C 0.305 3.695 10 O -0.409 6.409 11 N -0.357 5.357 12 C 0.037 3.963 13 H 0.102 0.898 14 C -0.162 4.162 15 C -0.152 4.152 16 C -0.157 4.157 17 C -0.174 4.174 18 C 0.063 3.937 19 H 0.067 0.933 20 N -0.361 5.361 21 C -0.372 4.372 22 H 0.087 0.913 23 C -0.206 4.206 24 N -0.576 5.576 25 Si 0.735 3.265 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.214 1.214 29 H 0.035 0.965 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.048 0.952 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.236 0.764 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.084 0.916 48 H 0.075 0.925 49 H 0.219 0.781 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.816 10.552 -2.749 15.359 hybrid contribution 0.773 0.339 1.683 1.883 sum -10.043 10.890 -1.066 14.853 Atomic orbital electron populations 1.22571 0.86945 1.04193 0.99477 1.61608 1.07949 1.12713 1.42191 1.22121 0.95857 0.88804 1.00228 1.21621 0.94253 0.99978 0.99804 1.21566 1.00401 0.95401 0.98221 1.21549 0.91042 0.97645 1.04382 1.21583 0.96904 0.92330 0.92996 0.92698 1.20276 0.78881 0.86919 0.83473 1.90634 1.45991 1.72638 1.31618 1.45925 1.60508 1.16549 1.12723 1.21271 0.91464 0.82299 1.01289 0.89844 1.21862 0.95597 0.97265 1.01471 1.21467 0.98836 0.95318 0.99538 1.21578 0.96811 0.99087 0.98253 1.22221 0.93201 0.99946 1.02041 1.20455 0.85676 0.92522 0.95065 0.93292 1.42395 0.99045 1.86051 1.08647 1.19146 0.87866 1.41509 0.88717 0.91343 1.24718 0.96821 1.02742 0.96294 1.69660 1.12378 1.56481 1.19084 0.86330 0.80388 0.78042 0.81745 1.21356 1.21764 1.21369 0.96528 0.91625 0.89184 0.95174 0.90647 0.91649 0.90879 0.91194 0.92264 0.90298 0.89880 0.76443 0.92180 0.92076 0.92461 0.91965 0.92438 0.92714 0.91648 0.92465 0.78100 0.93463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.10 60.06 0.55 0.75 16 2 N -0.52 -7.21 4.51 -236.33 -1.06 -8.28 16 3 C 0.06 0.64 5.47 -3.83 -0.02 0.62 16 4 C -0.12 -1.27 6.09 -26.65 -0.16 -1.43 16 5 C -0.12 -1.39 6.00 -26.61 -0.16 -1.55 16 6 C -0.11 -1.58 5.36 -26.65 -0.14 -1.73 16 7 C 0.07 1.06 2.24 -68.88 -0.15 0.91 16 8 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 9 C 0.52 8.80 6.23 -10.98 -0.07 8.73 16 10 O -0.53 -10.58 14.19 5.55 0.08 -10.50 16 11 N -0.71 -11.53 4.91 -53.80 -0.26 -11.79 16 12 C 0.14 2.40 1.98 -67.93 -0.13 2.27 16 13 H 0.08 1.64 7.58 -51.93 -0.39 1.24 16 14 C -0.12 -1.74 5.49 -26.73 -0.15 -1.89 16 15 C -0.11 -1.48 5.92 -26.73 -0.16 -1.64 16 16 C -0.12 -1.63 5.92 -26.73 -0.16 -1.79 16 17 C -0.13 -2.30 5.50 -26.73 -0.15 -2.45 16 18 C 0.17 3.23 2.29 -67.93 -0.16 3.08 16 19 H 0.05 0.92 8.08 -51.92 -0.42 0.50 16 20 N -0.72 -16.97 4.95 -53.42 -0.26 -17.24 16 21 C -0.24 -6.31 9.93 -15.06 -0.15 -6.46 16 22 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 23 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 24 N -0.93 -27.17 13.06 55.49 0.72 -26.44 16 25 Si 0.90 21.72 29.55 -169.99 -5.02 16.69 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 29 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 31 H 0.09 1.37 5.63 -51.93 -0.29 1.08 16 32 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.40 6.25 8.60 -40.82 -0.35 5.90 16 41 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 48 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.39 10.06 7.80 -40.82 -0.32 9.74 16 50 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 383.93 15.07 5.79 5.79 Total: -1.00 -29.70 383.93 -10.68 -40.39 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: -9.35 Total: 14.31 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -1.31 Total: -2.92 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: -0.87 Total: -63.75 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.08 Total: -10.50 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.70 -10.68 -40.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085245200.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.003 kcal (2) G-P(sol) polarization free energy of solvation -29.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds