Wall clock time and date at job start Tue Mar 31 2020 09:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46854 * 110.99648 * 2 1 4 4 C 1.53037 * 109.52285 * 185.80147 * 3 2 1 5 5 C 1.53114 * 109.31211 * 300.88400 * 4 3 2 6 6 C 1.53125 * 109.16368 * 57.63311 * 5 4 3 7 7 C 1.46840 * 111.00367 * 124.25439 * 2 1 3 8 8 H 1.09005 * 109.46534 * 294.17986 * 7 2 1 9 9 C 1.50708 * 109.45615 * 54.14812 * 7 2 1 10 10 O 1.21284 * 119.99135 * 20.04852 * 9 7 2 11 11 N 1.34773 * 120.00253 * 200.05301 * 9 7 2 12 12 C 1.46502 * 119.99620 * 180.02562 * 11 9 7 13 13 H 1.08996 * 109.47309 * 35.00002 * 12 11 9 14 14 C 1.52995 * 109.46990 * 274.99458 * 12 11 9 15 15 C 1.53002 * 109.47391 * 180.02562 * 14 12 11 16 16 C 1.52994 * 109.47209 * 60.00058 * 15 14 12 17 17 C 1.53003 * 109.47118 * 300.00270 * 16 15 14 18 18 C 1.53002 * 109.47301 * 59.99786 * 17 16 15 19 19 H 1.09009 * 109.46979 * 59.99758 * 18 17 16 20 20 N 1.46497 * 109.47559 * 179.97438 * 18 17 16 21 21 C 1.36932 * 120.00073 * 275.00576 * 20 18 17 22 22 H 1.08001 * 120.00131 * 359.97438 * 21 20 18 23 23 C 1.38819 * 120.00035 * 179.97438 * 21 20 18 24 24 N 1.31623 * 119.99788 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00097 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47258 * 59.99975 * 25 23 21 27 27 H 1.48501 * 109.47270 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47501 * 299.99643 * 25 23 21 29 29 H 1.08999 * 109.47502 * 295.74346 * 1 2 3 30 30 H 1.08996 * 109.47397 * 55.74738 * 1 2 3 31 31 H 1.09003 * 109.47015 * 175.74892 * 1 2 3 32 32 H 1.09000 * 109.42692 * 65.80880 * 3 2 1 33 33 H 1.09000 * 109.49358 * 305.83873 * 3 2 1 34 34 H 1.09002 * 109.50283 * 180.92217 * 4 3 2 35 35 H 1.09003 * 109.50113 * 60.84405 * 4 3 2 36 36 H 1.08998 * 109.52405 * 177.54026 * 5 4 3 37 37 H 1.09007 * 109.52681 * 297.73305 * 5 4 3 38 38 H 1.09005 * 109.49488 * 62.28510 * 6 5 4 39 39 H 1.08998 * 109.50244 * 182.36576 * 6 5 4 40 40 H 0.96999 * 120.00062 * 359.97438 * 11 9 7 41 41 H 1.09009 * 109.47433 * 300.00703 * 14 12 11 42 42 H 1.08997 * 109.47234 * 60.00310 * 14 12 11 43 43 H 1.09001 * 109.47139 * 180.02562 * 15 14 12 44 44 H 1.08997 * 109.46692 * 299.99850 * 15 14 12 45 45 H 1.09001 * 109.47200 * 59.99826 * 16 15 14 46 46 H 1.09001 * 109.47173 * 180.02562 * 16 15 14 47 47 H 1.08997 * 109.47456 * 180.02562 * 17 16 15 48 48 H 1.08997 * 109.46948 * 300.00310 * 17 16 15 49 49 H 0.96997 * 119.99907 * 94.99723 * 20 18 17 50 50 H 0.96993 * 119.99919 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9951 1.3710 0.0000 4 6 3.5181 1.3343 -0.1458 5 6 4.1188 0.5362 1.0147 6 6 3.5181 -0.8723 1.0201 7 6 1.9953 -0.7716 1.1331 8 1 1.7325 -0.2725 2.0658 9 6 1.3982 -2.1553 1.1187 10 8 0.9173 -2.5975 0.0968 11 7 1.3986 -2.9012 2.2412 12 6 0.8187 -4.2464 2.2269 13 1 1.0064 -4.7128 1.2598 14 6 -0.6899 -4.1540 2.4644 15 6 -1.2955 -5.5589 2.4501 16 6 -0.6560 -6.4013 3.5557 17 6 0.8527 -6.4938 3.3182 18 6 1.4583 -5.0888 3.3325 19 1 1.2706 -4.6220 4.2995 20 7 2.9029 -5.1773 3.1057 21 6 3.7481 -5.4100 4.1577 22 1 3.3498 -5.5278 5.1546 23 6 5.1170 -5.4944 3.9427 24 7 5.6024 -5.3513 2.7277 25 14 6.2700 -5.8111 5.3778 26 1 5.9258 -7.1088 6.0124 27 1 7.6707 -5.8569 4.8867 28 1 6.1302 -4.7199 6.3753 29 1 -0.3634 0.4463 0.9256 30 1 -0.3634 0.5784 -0.8494 31 1 -0.3633 -1.0249 -0.0762 32 1 1.7318 1.8604 0.9377 33 1 1.5638 1.9262 -0.8330 34 1 3.9099 2.3514 -0.1293 35 1 3.7819 0.8580 -1.0901 36 1 5.1997 0.4708 0.8907 37 1 3.8887 1.0339 1.9568 38 1 3.7814 -1.3836 0.0942 39 1 3.9105 -1.4319 1.8692 40 1 1.7835 -2.5475 3.0583 41 1 -0.8776 -3.6875 3.4316 42 1 -1.1455 -3.5536 1.6770 43 1 -2.3704 -5.4930 2.6189 44 1 -1.1079 -6.0256 1.4831 45 1 -0.8436 -5.9345 4.5226 46 1 -1.0871 -7.4023 3.5452 47 1 1.3083 -7.0942 4.1055 48 1 1.0403 -6.9604 2.3512 49 1 3.2607 -5.0713 2.2104 50 1 6.5588 -5.4099 2.5775 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085245200.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:51 Heat of formation + Delta-G solvation = -60.116132 kcal Electronic energy + Delta-G solvation = -27594.375889 eV Core-core repulsion = 24040.745272 eV Total energy + Delta-G solvation = -3553.630617 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.51431 -39.91579 -38.49580 -35.80324 -35.19948 -34.34846 -32.99195 -32.33571 -30.46636 -29.27336 -27.72655 -25.66887 -25.11977 -23.89932 -23.15589 -22.47334 -21.42238 -20.95302 -20.46695 -19.15160 -18.17586 -17.50125 -16.82214 -16.38059 -16.17452 -15.82818 -15.68632 -15.43773 -15.29935 -15.23250 -14.77501 -14.60593 -14.37015 -14.13540 -13.98681 -13.79992 -13.58206 -13.48777 -13.03568 -12.90994 -12.77051 -12.66453 -12.37587 -12.25870 -12.15515 -12.06359 -12.01494 -11.84016 -11.66346 -11.60820 -11.43330 -11.33857 -11.09986 -10.91845 -10.47887 -9.90701 -9.26677 -8.97746 -7.89124 -5.18160 1.48942 1.50884 1.56838 1.65442 2.15118 2.58072 2.96758 3.43547 3.63902 3.71378 3.82870 3.84150 3.95066 4.05303 4.14289 4.16896 4.25040 4.29025 4.32938 4.43902 4.47322 4.51388 4.53306 4.59311 4.59882 4.70119 4.73513 4.79712 4.95091 4.96663 4.99892 5.04755 5.08136 5.17579 5.18048 5.23058 5.24243 5.29352 5.31202 5.43040 5.46881 5.53881 5.58566 5.69746 5.95550 6.15945 6.29986 6.65019 7.32700 7.36911 8.10578 8.35254 9.33516 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.010323 B = 0.005341 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.662280 B = 5240.950725 C = 7601.149147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.541 5.541 3 C 0.057 3.943 4 C -0.115 4.115 5 C -0.114 4.114 6 C -0.104 4.104 7 C 0.082 3.918 8 H 0.075 0.925 9 C 0.515 3.485 10 O -0.566 6.566 11 N -0.704 5.704 12 C 0.150 3.850 13 H 0.049 0.951 14 C -0.113 4.113 15 C -0.110 4.110 16 C -0.109 4.109 17 C -0.128 4.128 18 C 0.173 3.827 19 H 0.058 0.942 20 N -0.730 5.730 21 C -0.232 4.232 22 H 0.078 0.922 23 C -0.071 4.071 24 N -0.968 5.968 25 Si 0.967 3.033 26 H -0.282 1.282 27 H -0.302 1.302 28 H -0.275 1.275 29 H 0.031 0.969 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.048 0.952 39 H 0.062 0.938 40 H 0.406 0.594 41 H 0.078 0.922 42 H 0.056 0.944 43 H 0.087 0.913 44 H 0.051 0.949 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.049 0.951 48 H 0.039 0.961 49 H 0.368 0.632 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.449 12.764 -0.028 17.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.267 5.267 3 C -0.070 4.070 4 C -0.153 4.153 5 C -0.151 4.151 6 C -0.143 4.143 7 C -0.030 4.030 8 H 0.093 0.907 9 C 0.302 3.698 10 O -0.445 6.445 11 N -0.354 5.354 12 C 0.044 3.956 13 H 0.067 0.933 14 C -0.152 4.152 15 C -0.148 4.148 16 C -0.147 4.147 17 C -0.169 4.169 18 C 0.064 3.936 19 H 0.076 0.924 20 N -0.369 5.369 21 C -0.364 4.364 22 H 0.096 0.904 23 C -0.263 4.263 24 N -0.619 5.619 25 Si 0.796 3.204 26 H -0.209 1.209 27 H -0.229 1.229 28 H -0.201 1.201 29 H 0.050 0.950 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.241 0.759 41 H 0.097 0.903 42 H 0.075 0.925 43 H 0.106 0.894 44 H 0.070 0.930 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.068 0.932 48 H 0.057 0.943 49 H 0.199 0.801 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -12.565 12.204 -0.996 17.545 hybrid contribution 1.246 -0.202 1.121 1.688 sum -11.320 12.002 0.125 16.499 Atomic orbital electron populations 1.22487 0.86427 1.02835 1.00945 1.61586 1.08635 1.14465 1.42034 1.22231 0.95852 0.87288 1.01633 1.21621 0.94208 1.01098 0.98361 1.21560 1.00354 0.93500 0.99714 1.21468 0.91700 0.99312 1.01807 1.21491 0.96158 0.90960 0.94379 0.90698 1.20811 0.78230 0.87928 0.82869 1.90614 1.47535 1.73627 1.32748 1.45930 1.60318 1.16232 1.12906 1.21127 0.93567 0.82129 0.98736 0.93271 1.21787 0.92833 0.98356 1.02197 1.21472 1.00460 0.94047 0.98841 1.21511 0.93511 1.00559 0.99139 1.22095 0.96197 0.98129 1.00496 1.20659 0.83186 0.93809 0.95928 0.92417 1.42556 1.01063 1.86059 1.07251 1.19523 0.88262 1.39072 0.89530 0.90410 1.25455 0.98502 1.03972 0.98419 1.69835 1.11936 1.58907 1.21176 0.85316 0.77783 0.78176 0.79079 1.20866 1.22857 1.20146 0.95042 0.90017 0.91982 0.93702 0.89087 0.88802 0.92344 0.91061 0.90616 0.93354 0.91915 0.75935 0.90332 0.92537 0.89428 0.92989 0.90903 0.90906 0.93192 0.94256 0.80083 0.94354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.10 127.69 1.16 1.67 16 2 N -0.54 -14.53 4.51 -901.60 -4.06 -18.59 16 3 C 0.06 1.12 5.47 86.32 0.47 1.60 16 4 C -0.12 -2.23 6.09 30.64 0.19 -2.05 16 5 C -0.11 -2.55 6.00 30.67 0.18 -2.37 16 6 C -0.10 -3.15 5.36 30.65 0.16 -2.99 16 7 C 0.08 2.35 2.24 44.19 0.10 2.45 16 8 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 9 C 0.52 17.93 6.23 87.66 0.55 18.47 16 10 O -0.57 -23.48 14.19 -3.04 -0.04 -23.53 16 11 N -0.70 -23.36 4.91 -442.53 -2.17 -25.54 16 12 C 0.15 5.14 1.98 44.99 0.09 5.23 16 13 H 0.05 2.04 7.58 -2.39 -0.02 2.02 16 14 C -0.11 -3.03 5.49 30.59 0.17 -2.86 16 15 C -0.11 -2.62 5.92 30.59 0.18 -2.44 16 16 C -0.11 -2.71 5.92 30.59 0.18 -2.53 16 17 C -0.13 -4.39 5.50 30.60 0.17 -4.23 16 18 C 0.17 6.45 2.29 44.99 0.10 6.55 16 19 H 0.06 2.08 8.08 -2.38 -0.02 2.06 16 20 N -0.73 -35.29 4.95 -322.93 -1.60 -36.89 16 21 C -0.23 -12.23 9.93 84.04 0.83 -11.40 16 22 H 0.08 3.90 7.83 -2.91 -0.02 3.87 16 23 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 24 N -0.97 -58.59 13.06 21.65 0.28 -58.31 16 25 Si 0.97 45.09 29.55 68.60 2.03 47.12 16 26 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 27 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 28 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 29 H 0.03 0.66 8.14 -2.39 -0.02 0.65 16 30 H 0.08 1.70 8.09 -2.39 -0.02 1.68 16 31 H 0.06 1.89 5.63 -2.39 -0.01 1.88 16 32 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.09 1.53 8.09 -2.39 -0.02 1.51 16 34 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 38 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.41 12.66 8.60 -92.71 -0.80 11.86 16 41 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 42 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 44 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 49 H 0.37 20.18 7.80 -92.71 -0.72 19.46 16 50 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -66.56 383.93 -1.18 -67.74 By element: Atomic # 1 Polarization: 47.01 SS G_CDS: -0.61 Total: 46.39 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 5.01 Total: 1.61 kcal Atomic # 7 Polarization: -131.78 SS G_CDS: -7.55 Total: -139.33 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.04 Total: -23.53 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -66.56 -1.18 -67.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085245200.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.622 kcal (2) G-P(sol) polarization free energy of solvation -66.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds