Wall clock time and date at job start Tue Mar 31 2020 09:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 110.91691 * 2 1 4 4 C 1.54905 * 111.00959 * 236.09426 * 2 1 3 5 5 N 1.47423 * 104.83684 * 204.91675 * 4 2 1 6 6 C 1.36932 * 125.65186 * 204.08971 * 5 4 2 7 7 H 1.08003 * 119.99893 * 180.02562 * 6 5 4 8 8 C 1.38812 * 119.99811 * 0.04534 * 6 5 4 9 9 N 1.31621 * 120.00028 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99880 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47248 * 59.99819 * 10 8 6 12 12 H 1.48499 * 109.46707 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47098 * 299.99373 * 10 8 6 14 14 C 1.47033 * 108.70079 * 24.12680 * 5 4 2 15 15 C 1.54318 * 107.26952 * 358.93982 * 14 5 4 16 16 H 1.09006 * 110.71850 * 96.35237 * 15 14 5 17 17 C 1.53001 * 110.72190 * 219.44390 * 15 14 5 18 18 N 1.46508 * 109.46772 * 293.55098 * 17 15 14 19 19 C 1.34777 * 119.99566 * 179.72562 * 18 17 15 20 20 O 1.21283 * 120.00162 * 355.20369 * 19 18 17 21 21 C 1.50699 * 119.99651 * 175.21072 * 19 18 17 22 22 N 1.46903 * 112.84629 * 180.42263 * 21 19 18 23 23 C 1.46897 * 110.99978 * 297.94787 * 22 21 19 24 24 C 1.46903 * 111.00308 * 61.90442 * 22 21 19 25 25 C 1.53774 * 113.61707 * 49.22238 * 21 19 18 26 26 C 1.53953 * 87.02016 * 220.04618 * 25 21 19 27 27 C 1.53778 * 113.61451 * 311.61051 * 21 19 18 28 28 H 1.09007 * 109.47599 * 296.10029 * 1 2 3 29 29 H 1.09002 * 109.47301 * 56.10439 * 1 2 3 30 30 H 1.09009 * 109.47309 * 176.10265 * 1 2 3 31 31 H 1.08994 * 110.36668 * 86.07621 * 4 2 1 32 32 H 1.09004 * 110.45825 * 323.80130 * 4 2 1 33 33 H 0.97004 * 119.99726 * 180.02562 * 9 8 6 34 34 H 1.08996 * 109.87819 * 239.51991 * 14 5 4 35 35 H 1.08996 * 110.00659 * 118.43171 * 14 5 4 36 36 H 1.09001 * 109.47492 * 173.55326 * 17 15 14 37 37 H 1.08998 * 109.46933 * 53.54567 * 17 15 14 38 38 H 0.97000 * 119.99945 * 359.97438 * 18 17 15 39 39 H 1.09003 * 109.47416 * 60.18083 * 23 22 21 40 40 H 1.09005 * 109.47504 * 180.18072 * 23 22 21 41 41 H 1.09004 * 109.47362 * 300.17890 * 23 22 21 42 42 H 1.09000 * 109.46680 * 59.99842 * 24 22 21 43 43 H 1.09002 * 109.47228 * 180.02562 * 24 22 21 44 44 H 1.08999 * 109.46712 * 300.00003 * 24 22 21 45 45 H 1.09001 * 113.62005 * 334.57003 * 25 21 19 46 46 H 1.09010 * 113.61251 * 105.47395 * 25 21 19 47 47 H 1.08995 * 113.54091 * 270.81261 * 26 25 21 48 48 H 1.08998 * 113.74083 * 139.94371 * 26 25 21 49 49 H 1.08998 * 113.62232 * 254.53245 * 27 21 19 50 50 H 1.09007 * 113.61094 * 25.35856 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0853 -0.8067 -1.2002 5 7 3.4271 -1.2431 -0.7732 6 6 4.4640 -1.5667 -1.6069 7 1 5.4125 -1.8769 -1.1938 8 6 4.2962 -1.4958 -2.9830 9 7 3.1403 -1.1179 -3.4864 10 14 5.7110 -1.9367 -4.1204 11 1 6.1186 -3.3444 -3.8808 12 1 5.2780 -1.7807 -5.5323 13 1 6.8608 -1.0359 -3.8524 14 6 3.4674 -1.2740 0.6963 15 6 2.0861 -0.8078 1.2023 16 1 1.4478 -1.6631 1.4241 17 6 2.2348 0.0879 2.4339 18 7 2.7614 -0.7009 3.5506 19 6 2.9808 -0.1156 4.7446 20 8 2.8254 1.0806 4.8713 21 6 3.4193 -0.9474 5.9222 22 7 3.6028 -0.1535 7.1445 23 6 4.6583 0.8523 6.9655 24 6 2.3412 0.4753 7.5583 25 6 4.6007 -1.8813 5.6110 26 6 3.8847 -2.9409 6.4681 27 6 2.5722 -2.2136 6.1316 28 1 -0.3634 0.4521 0.9229 29 1 -0.3634 0.5731 -0.8530 30 1 -0.3634 -1.0254 -0.0699 31 1 2.1560 -0.1721 -2.0835 32 1 1.4525 -1.6705 -1.4041 33 1 3.0230 -1.0687 -4.4481 34 1 4.2426 -0.5996 1.0601 35 1 3.6662 -2.2882 1.0426 36 1 1.2617 0.4971 2.7052 37 1 2.9222 0.9034 2.2091 38 1 2.9555 -1.6436 3.4295 39 1 4.3851 1.5252 6.1527 40 1 4.7757 1.4238 7.8863 41 1 5.5976 0.3544 6.7248 42 1 1.5967 -0.2971 7.7516 43 1 2.5056 1.0572 8.4653 44 1 1.9855 1.1324 6.7649 45 1 4.6783 -2.1512 4.5578 46 1 5.5472 -1.5436 6.0334 47 1 4.1492 -2.8976 7.5246 48 1 3.9426 -3.9492 6.0582 49 1 1.8833 -2.1440 6.9734 50 1 2.0929 -2.5738 5.2211 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102046238.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:17:43 Heat of formation + Delta-G solvation = 16.675852 kcal Electronic energy + Delta-G solvation = -27111.599828 eV Core-core repulsion = 23561.299162 eV Total energy + Delta-G solvation = -3550.300666 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.06694 -38.50514 -37.59345 -35.60094 -34.20552 -32.89528 -30.77883 -29.47067 -28.09867 -26.86436 -25.90008 -25.46306 -25.00323 -23.33074 -22.45649 -21.21114 -19.84264 -19.64722 -18.76226 -17.56487 -16.81090 -16.41427 -15.69737 -15.37086 -15.10167 -14.79770 -14.60431 -14.25224 -14.13978 -13.76504 -13.61722 -13.24459 -12.85037 -12.69027 -12.65866 -12.13531 -12.06291 -11.95154 -11.90023 -11.72631 -11.58175 -11.51996 -11.35659 -11.17441 -10.93151 -10.88788 -10.79819 -10.48692 -10.28300 -10.14395 -10.03442 -9.93333 -9.80204 -9.44640 -8.95086 -8.67063 -8.24932 -6.85864 -5.67331 -3.09310 2.51809 3.20022 3.38918 3.43155 3.44447 3.62553 4.31953 4.33414 4.46425 4.56689 4.67592 4.90640 5.09038 5.16932 5.21845 5.27556 5.38247 5.42373 5.44827 5.47488 5.50127 5.55412 5.67135 5.67928 5.72776 5.73836 5.83866 5.85639 5.93739 5.96613 6.03850 6.05715 6.10887 6.17869 6.23399 6.46030 6.50575 6.57005 6.58999 6.76227 6.78624 6.79069 6.91889 7.50813 7.52950 7.60338 7.84175 8.21847 8.34260 9.19940 9.80789 10.45638 11.36295 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.018900 B = 0.003266 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.153011 B = 8571.592257 C = 9282.635146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 H 0.071 0.929 4 C 0.160 3.840 5 N -0.604 5.604 6 C -0.225 4.225 7 H 0.076 0.924 8 C -0.010 4.010 9 N -0.922 5.922 10 Si 0.915 3.085 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.142 3.858 15 C -0.110 4.110 16 H 0.076 0.924 17 C 0.132 3.868 18 N -0.720 5.720 19 C 0.498 3.502 20 O -0.545 6.545 21 C 0.060 3.940 22 N -0.498 5.498 23 C 0.009 3.991 24 C 0.010 3.990 25 C -0.124 4.124 26 C -0.124 4.124 27 C -0.122 4.122 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.106 0.894 32 H 0.013 0.987 33 H 0.253 0.747 34 H 0.023 0.977 35 H 0.017 0.983 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.400 0.600 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.055 0.945 45 H 0.090 0.910 46 H 0.080 0.920 47 H 0.089 0.911 48 H 0.071 0.929 49 H 0.079 0.921 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.760 -1.006 20.061 20.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.131 4.131 3 H 0.089 0.911 4 C 0.035 3.965 5 N -0.330 5.330 6 C -0.353 4.353 7 H 0.094 0.906 8 C -0.206 4.206 9 N -0.570 5.570 10 Si 0.745 3.255 11 H -0.212 1.212 12 H -0.215 1.215 13 H -0.211 1.211 14 C 0.016 3.984 15 C -0.129 4.129 16 H 0.094 0.906 17 C 0.009 3.991 18 N -0.372 5.372 19 C 0.283 3.717 20 O -0.423 6.423 21 C -0.034 4.034 22 N -0.220 5.220 23 C -0.139 4.139 24 C -0.138 4.138 25 C -0.162 4.162 26 C -0.162 4.162 27 C -0.160 4.160 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.124 0.876 32 H 0.031 0.969 33 H 0.063 0.937 34 H 0.041 0.959 35 H 0.035 0.965 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.235 0.765 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.108 0.892 46 H 0.099 0.901 47 H 0.108 0.892 48 H 0.089 0.911 49 H 0.098 0.902 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.685 -0.470 20.301 20.483 hybrid contribution 0.544 -0.102 -1.314 1.426 sum -2.142 -0.572 18.987 19.116 Atomic orbital electron populations 1.21650 0.95496 1.01409 1.00633 1.22599 0.94595 0.99500 0.96416 0.91087 1.21978 0.84027 0.95865 0.94649 1.44469 1.10559 1.78989 0.98955 1.19026 0.91063 1.37965 0.87234 0.90604 1.24785 0.97280 1.01903 0.96612 1.69786 1.22416 1.53686 1.11146 0.86155 0.81234 0.78181 0.79938 1.21212 1.21543 1.21148 1.21309 0.93430 0.96992 0.86690 1.22492 0.98625 0.98106 0.93674 0.90570 1.21443 0.98675 0.94231 0.84778 1.46205 1.65799 1.14029 1.11128 1.21555 0.77017 0.88573 0.84553 1.90610 1.52123 1.15339 1.84250 1.22470 0.99769 0.92973 0.88184 1.62343 1.07874 1.24884 1.26894 1.22545 0.94345 0.94875 1.02118 1.22534 0.91159 0.99134 1.00982 1.23057 0.96967 0.95260 1.00891 1.22744 0.95016 0.97556 1.00840 1.23005 0.97178 0.93171 1.02636 0.93733 0.92643 0.92941 0.87634 0.96900 0.93661 0.95918 0.96502 0.91836 0.91379 0.76504 0.92564 0.91518 0.91750 0.91857 0.91519 0.92675 0.89179 0.90100 0.89213 0.91050 0.90236 0.89296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 9.31 37.15 0.35 -1.70 16 2 C -0.11 -2.03 3.09 -88.48 -0.27 -2.30 16 3 H 0.07 1.34 8.05 -51.93 -0.42 0.92 16 4 C 0.16 3.79 5.36 -2.53 -0.01 3.77 16 5 N -0.60 -15.25 3.39 -170.08 -0.58 -15.82 16 6 C -0.22 -6.22 10.27 -15.06 -0.15 -6.38 16 7 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 8 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 9 N -0.92 -26.66 10.09 55.49 0.56 -26.10 16 10 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 14 C 0.14 2.85 6.52 -3.06 -0.02 2.83 16 15 C -0.11 -1.80 2.48 -88.79 -0.22 -2.02 16 16 H 0.08 1.18 8.04 -51.93 -0.42 0.76 16 17 C 0.13 1.96 5.00 -4.04 -0.02 1.94 16 18 N -0.72 -9.26 4.98 -60.29 -0.30 -9.56 16 19 C 0.50 6.75 6.54 -10.99 -0.07 6.68 16 20 O -0.54 -9.11 12.23 5.55 0.07 -9.04 16 21 C 0.06 0.65 0.40 -131.95 -0.05 0.59 16 22 N -0.50 -5.44 4.80 -235.80 -1.13 -6.58 16 23 C 0.01 0.10 9.16 60.06 0.55 0.65 16 24 C 0.01 0.10 9.16 60.07 0.55 0.65 16 25 C -0.12 -1.14 7.05 -25.83 -0.18 -1.33 16 26 C -0.12 -0.97 8.00 -25.83 -0.21 -1.18 16 27 C -0.12 -1.06 7.05 -25.92 -0.18 -1.24 16 28 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.79 8.08 -51.92 -0.42 0.37 16 31 H 0.11 2.86 5.87 -51.93 -0.31 2.55 16 32 H 0.01 0.33 7.99 -51.93 -0.41 -0.09 16 33 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.02 0.47 7.77 -51.93 -0.40 0.07 16 35 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.14 8.06 -51.93 -0.42 0.72 16 38 H 0.40 4.46 6.67 -40.82 -0.27 4.19 16 39 H 0.06 0.77 5.81 -51.93 -0.30 0.47 16 40 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 41 H 0.06 0.66 6.83 -51.93 -0.35 0.30 16 42 H 0.06 0.60 6.84 -51.93 -0.36 0.24 16 43 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 44 H 0.05 0.72 5.83 -51.93 -0.30 0.42 16 45 H 0.09 0.82 7.15 -51.93 -0.37 0.45 16 46 H 0.08 0.75 6.90 -51.92 -0.36 0.39 16 47 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.08 0.67 6.91 -51.93 -0.36 0.31 16 50 H 0.09 0.72 7.30 -51.93 -0.38 0.34 16 LS Contribution 376.57 15.07 5.67 5.67 Total: -1.00 -31.10 376.57 -9.55 -40.66 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -8.78 Total: 3.25 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -0.05 Total: 0.59 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: -1.45 Total: -58.06 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.07 Total: -9.04 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.10 -9.55 -40.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102046238.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.333 kcal (2) G-P(sol) polarization free energy of solvation -31.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds