Wall clock time and date at job start Tue Mar 31 2020 09:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 110.91691 * 2 1 4 4 C 1.54905 * 111.00959 * 236.09426 * 2 1 3 5 5 N 1.47423 * 104.83684 * 204.91675 * 4 2 1 6 6 C 1.36932 * 125.65186 * 204.08971 * 5 4 2 7 7 H 1.08003 * 119.99893 * 180.02562 * 6 5 4 8 8 C 1.38812 * 119.99811 * 0.04534 * 6 5 4 9 9 N 1.31621 * 120.00028 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99880 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47248 * 59.99819 * 10 8 6 12 12 H 1.48499 * 109.46707 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47098 * 299.99373 * 10 8 6 14 14 C 1.47033 * 108.70079 * 24.12680 * 5 4 2 15 15 C 1.54318 * 107.26952 * 358.93982 * 14 5 4 16 16 H 1.09006 * 110.71850 * 96.35237 * 15 14 5 17 17 C 1.53001 * 110.72190 * 219.44390 * 15 14 5 18 18 N 1.46508 * 109.46772 * 293.55098 * 17 15 14 19 19 C 1.34777 * 119.99566 * 179.72562 * 18 17 15 20 20 O 1.21283 * 120.00162 * 355.20369 * 19 18 17 21 21 C 1.50699 * 119.99651 * 175.21072 * 19 18 17 22 22 N 1.46903 * 112.84629 * 180.42263 * 21 19 18 23 23 C 1.46897 * 110.99978 * 297.94787 * 22 21 19 24 24 C 1.46903 * 111.00308 * 61.90442 * 22 21 19 25 25 C 1.53774 * 113.61707 * 49.22238 * 21 19 18 26 26 C 1.53953 * 87.02016 * 220.04618 * 25 21 19 27 27 C 1.53778 * 113.61451 * 311.61051 * 21 19 18 28 28 H 1.09007 * 109.47599 * 296.10029 * 1 2 3 29 29 H 1.09002 * 109.47301 * 56.10439 * 1 2 3 30 30 H 1.09009 * 109.47309 * 176.10265 * 1 2 3 31 31 H 1.08994 * 110.36668 * 86.07621 * 4 2 1 32 32 H 1.09004 * 110.45825 * 323.80130 * 4 2 1 33 33 H 0.97004 * 119.99726 * 180.02562 * 9 8 6 34 34 H 1.08996 * 109.87819 * 239.51991 * 14 5 4 35 35 H 1.08996 * 110.00659 * 118.43171 * 14 5 4 36 36 H 1.09001 * 109.47492 * 173.55326 * 17 15 14 37 37 H 1.08998 * 109.46933 * 53.54567 * 17 15 14 38 38 H 0.97000 * 119.99945 * 359.97438 * 18 17 15 39 39 H 1.09003 * 109.47416 * 60.18083 * 23 22 21 40 40 H 1.09005 * 109.47504 * 180.18072 * 23 22 21 41 41 H 1.09004 * 109.47362 * 300.17890 * 23 22 21 42 42 H 1.09000 * 109.46680 * 59.99842 * 24 22 21 43 43 H 1.09002 * 109.47228 * 180.02562 * 24 22 21 44 44 H 1.08999 * 109.46712 * 300.00003 * 24 22 21 45 45 H 1.09001 * 113.62005 * 334.57003 * 25 21 19 46 46 H 1.09010 * 113.61251 * 105.47395 * 25 21 19 47 47 H 1.08995 * 113.54091 * 270.81261 * 26 25 21 48 48 H 1.08998 * 113.74083 * 139.94371 * 26 25 21 49 49 H 1.08998 * 113.62232 * 254.53245 * 27 21 19 50 50 H 1.09007 * 113.61094 * 25.35856 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0853 -0.8067 -1.2002 5 7 3.4271 -1.2431 -0.7732 6 6 4.4640 -1.5667 -1.6069 7 1 5.4125 -1.8769 -1.1938 8 6 4.2962 -1.4958 -2.9830 9 7 3.1403 -1.1179 -3.4864 10 14 5.7110 -1.9367 -4.1204 11 1 6.1186 -3.3444 -3.8808 12 1 5.2780 -1.7807 -5.5323 13 1 6.8608 -1.0359 -3.8524 14 6 3.4674 -1.2740 0.6963 15 6 2.0861 -0.8078 1.2023 16 1 1.4478 -1.6631 1.4241 17 6 2.2348 0.0879 2.4339 18 7 2.7614 -0.7009 3.5506 19 6 2.9808 -0.1156 4.7446 20 8 2.8254 1.0806 4.8713 21 6 3.4193 -0.9474 5.9222 22 7 3.6028 -0.1535 7.1445 23 6 4.6583 0.8523 6.9655 24 6 2.3412 0.4753 7.5583 25 6 4.6007 -1.8813 5.6110 26 6 3.8847 -2.9409 6.4681 27 6 2.5722 -2.2136 6.1316 28 1 -0.3634 0.4521 0.9229 29 1 -0.3634 0.5731 -0.8530 30 1 -0.3634 -1.0254 -0.0699 31 1 2.1560 -0.1721 -2.0835 32 1 1.4525 -1.6705 -1.4041 33 1 3.0230 -1.0687 -4.4481 34 1 4.2426 -0.5996 1.0601 35 1 3.6662 -2.2882 1.0426 36 1 1.2617 0.4971 2.7052 37 1 2.9222 0.9034 2.2091 38 1 2.9555 -1.6436 3.4295 39 1 4.3851 1.5252 6.1527 40 1 4.7757 1.4238 7.8863 41 1 5.5976 0.3544 6.7248 42 1 1.5967 -0.2971 7.7516 43 1 2.5056 1.0572 8.4653 44 1 1.9855 1.1324 6.7649 45 1 4.6783 -2.1512 4.5578 46 1 5.5472 -1.5436 6.0334 47 1 4.1492 -2.8976 7.5246 48 1 3.9426 -3.9492 6.0582 49 1 1.8833 -2.1440 6.9734 50 1 2.0929 -2.5738 5.2211 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102046238.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:17:42 Heat of formation + Delta-G solvation = -3.850172 kcal Electronic energy + Delta-G solvation = -27112.489903 eV Core-core repulsion = 23561.299162 eV Total energy + Delta-G solvation = -3551.190742 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.99006 -39.91456 -38.74254 -36.64304 -35.49144 -34.50212 -32.57568 -30.90023 -28.92182 -28.13767 -27.48668 -26.40098 -26.17894 -24.67993 -23.61787 -22.24668 -21.48598 -20.99170 -19.81017 -18.86591 -18.40350 -17.37039 -17.12430 -16.52694 -16.36311 -15.98957 -15.75798 -15.62005 -15.41306 -14.89203 -14.76746 -14.57919 -14.42800 -14.02312 -13.55188 -13.39632 -13.38618 -13.16833 -12.95583 -12.85797 -12.77878 -12.68129 -12.64772 -12.49225 -12.45637 -12.35237 -12.00936 -11.83883 -11.64368 -11.60275 -11.43343 -11.22913 -11.20361 -10.99401 -10.74135 -10.09447 -9.20069 -8.88838 -7.77730 -5.22278 1.45749 1.48703 1.49563 1.55096 2.14312 2.48872 2.81052 3.31270 3.55043 3.58857 3.59796 3.71433 3.82943 3.88314 3.91021 3.96393 4.16139 4.35320 4.41876 4.47509 4.57831 4.59791 4.65379 4.70236 4.72560 4.73272 4.75672 4.82238 4.92032 4.93397 4.96085 5.01324 5.07655 5.12349 5.14047 5.15958 5.21499 5.34407 5.37732 5.41942 5.44373 5.49593 5.70628 5.83540 5.92628 5.94840 6.31085 6.50994 7.10565 7.18705 7.78374 8.41979 9.23533 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.018900 B = 0.003266 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.153011 B = 8571.592257 C = 9282.635146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 H 0.062 0.938 4 C 0.163 3.837 5 N -0.628 5.628 6 C -0.242 4.242 7 H 0.079 0.921 8 C -0.066 4.066 9 N -0.948 5.948 10 Si 0.979 3.021 11 H -0.276 1.276 12 H -0.293 1.293 13 H -0.279 1.279 14 C 0.139 3.861 15 C -0.088 4.088 16 H 0.097 0.903 17 C 0.146 3.854 18 N -0.713 5.713 19 C 0.495 3.505 20 O -0.579 6.579 21 C 0.054 3.946 22 N -0.494 5.494 23 C 0.012 3.988 24 C 0.012 3.988 25 C -0.125 4.125 26 C -0.112 4.112 27 C -0.117 4.117 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.067 0.933 32 H -0.008 1.008 33 H 0.247 0.753 34 H 0.016 0.984 35 H 0.030 0.970 36 H 0.073 0.927 37 H 0.045 0.955 38 H 0.410 0.590 39 H 0.027 0.973 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.028 0.972 45 H 0.091 0.909 46 H 0.079 0.921 47 H 0.091 0.909 48 H 0.087 0.913 49 H 0.084 0.916 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.832 -2.349 22.073 22.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.122 4.122 3 H 0.080 0.920 4 C 0.038 3.962 5 N -0.354 5.354 6 C -0.371 4.371 7 H 0.097 0.903 8 C -0.259 4.259 9 N -0.597 5.597 10 Si 0.807 3.193 11 H -0.202 1.202 12 H -0.219 1.219 13 H -0.205 1.205 14 C 0.014 3.986 15 C -0.107 4.107 16 H 0.115 0.885 17 C 0.022 3.978 18 N -0.365 5.365 19 C 0.281 3.719 20 O -0.460 6.460 21 C -0.041 4.041 22 N -0.216 5.216 23 C -0.136 4.136 24 C -0.136 4.136 25 C -0.163 4.163 26 C -0.149 4.149 27 C -0.155 4.155 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.010 0.990 33 H 0.057 0.943 34 H 0.034 0.966 35 H 0.048 0.952 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.247 0.753 39 H 0.045 0.955 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.046 0.954 45 H 0.110 0.890 46 H 0.098 0.902 47 H 0.110 0.890 48 H 0.105 0.895 49 H 0.103 0.897 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.750 -1.837 22.350 22.593 hybrid contribution 0.598 0.345 -1.912 2.033 sum -2.152 -1.493 20.438 20.605 Atomic orbital electron populations 1.21597 0.92694 1.02040 1.02098 1.22437 0.96807 0.98227 0.94703 0.91951 1.21743 0.83736 0.94913 0.95768 1.44792 1.10502 1.79032 1.01074 1.19413 0.92003 1.37570 0.88090 0.90275 1.25622 0.99713 1.02423 0.98104 1.70054 1.24131 1.54729 1.10816 0.85145 0.78411 0.78221 0.77513 1.20241 1.21941 1.20504 1.21469 0.95483 0.97583 0.84067 1.22326 0.96510 0.98543 0.93367 0.88498 1.21146 0.98692 0.93331 0.84657 1.46099 1.65549 1.14369 1.10511 1.22184 0.76151 0.88385 0.85169 1.90609 1.53556 1.17045 1.84789 1.22698 1.01412 0.93094 0.86854 1.62415 1.07842 1.24595 1.26719 1.22520 0.94738 0.94683 1.01703 1.22531 0.91331 0.99232 1.00480 1.23118 0.96467 0.95346 1.01391 1.22691 0.93692 0.97803 1.00699 1.23061 0.97546 0.91592 1.03284 0.90923 0.92753 0.92508 0.91486 0.99009 0.94349 0.96577 0.95179 0.90866 0.93632 0.75272 0.95468 0.90191 0.91028 0.90497 0.90331 0.95355 0.89039 0.90233 0.89010 0.89458 0.89715 0.88461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 9.31 71.98 0.67 -2.97 16 2 C -0.10 -3.67 3.09 -9.40 -0.03 -3.70 16 3 H 0.06 2.36 8.05 -2.39 -0.02 2.34 16 4 C 0.16 7.95 5.36 86.85 0.47 8.41 16 5 N -0.63 -32.14 3.39 -692.00 -2.35 -34.49 16 6 C -0.24 -13.57 10.27 84.03 0.86 -12.71 16 7 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 8 C -0.07 -3.75 5.49 84.86 0.47 -3.28 16 9 N -0.95 -56.49 10.09 21.65 0.22 -56.28 16 10 Si 0.98 45.63 29.55 68.60 2.03 47.66 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 12 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 13 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 14 C 0.14 5.48 6.52 86.72 0.57 6.05 16 15 C -0.09 -2.76 2.48 -9.61 -0.02 -2.78 16 16 H 0.10 2.70 8.04 -2.38 -0.02 2.68 16 17 C 0.15 4.11 5.00 86.38 0.43 4.54 16 18 N -0.71 -17.11 4.98 -463.04 -2.31 -19.42 16 19 C 0.49 12.85 6.54 87.66 0.57 13.43 16 20 O -0.58 -19.33 12.23 -3.04 -0.04 -19.36 16 21 C 0.05 1.05 0.40 3.30 0.00 1.05 16 22 N -0.49 -10.02 4.80 -899.94 -4.32 -14.34 16 23 C 0.01 0.25 9.16 127.69 1.17 1.42 16 24 C 0.01 0.24 9.16 127.69 1.17 1.41 16 25 C -0.13 -2.03 7.05 31.18 0.22 -1.81 16 26 C -0.11 -1.39 8.00 31.18 0.25 -1.14 16 27 C -0.12 -1.68 7.05 31.12 0.22 -1.46 16 28 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.06 1.59 8.08 -2.38 -0.02 1.57 16 31 H 0.07 3.79 5.87 -2.39 -0.01 3.78 16 32 H -0.01 -0.42 7.99 -2.38 -0.02 -0.44 16 33 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 34 H 0.02 0.66 7.77 -2.39 -0.02 0.64 16 35 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.05 1.51 8.06 -2.39 -0.02 1.49 16 38 H 0.41 8.13 6.67 -92.71 -0.62 7.51 16 39 H 0.03 0.75 5.81 -2.39 -0.01 0.73 16 40 H 0.08 1.45 8.12 -2.38 -0.02 1.43 16 41 H 0.07 1.39 6.83 -2.38 -0.02 1.37 16 42 H 0.08 1.29 6.84 -2.39 -0.02 1.28 16 43 H 0.08 1.34 8.12 -2.39 -0.02 1.32 16 44 H 0.03 0.73 5.83 -2.39 -0.01 0.71 16 45 H 0.09 1.46 7.15 -2.39 -0.02 1.44 16 46 H 0.08 1.32 6.90 -2.38 -0.02 1.30 16 47 H 0.09 1.14 8.14 -2.39 -0.02 1.13 16 48 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.08 1.16 6.91 -2.39 -0.02 1.14 16 50 H 0.10 1.25 7.30 -2.38 -0.02 1.23 16 Total: -1.00 -69.34 376.57 0.54 -68.80 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 0.30 Total: 20.98 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 7.01 Total: 6.45 kcal Atomic # 7 Polarization: -115.76 SS G_CDS: -8.76 Total: -124.52 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.04 Total: -19.36 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -69.34 0.54 -68.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102046238.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.946 kcal (2) G-P(sol) polarization free energy of solvation -69.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds