Wall clock time and date at job start Tue Mar 31 2020 09:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.91973 * 2 1 4 4 C 1.54910 * 111.00347 * 236.09380 * 2 1 3 5 5 N 1.47426 * 104.83444 * 204.91756 * 4 2 1 6 6 C 1.36931 * 125.64768 * 204.09458 * 5 4 2 7 7 H 1.08005 * 119.99822 * 168.79510 * 6 5 4 8 8 C 1.38807 * 120.00390 * 348.79478 * 6 5 4 9 9 N 1.31626 * 119.99733 * 1.84545 * 8 6 5 10 10 Si 1.86801 * 120.00355 * 181.84120 * 8 6 5 11 11 H 1.48503 * 109.46659 * 94.98073 * 10 8 6 12 12 H 1.48497 * 109.47677 * 214.97736 * 10 8 6 13 13 H 1.48498 * 109.47001 * 334.98425 * 10 8 6 14 14 C 1.47024 * 108.69854 * 24.12945 * 5 4 2 15 15 C 1.54318 * 107.27714 * 358.94224 * 14 5 4 16 16 H 1.08997 * 110.72148 * 96.34535 * 15 14 5 17 17 C 1.53000 * 110.72138 * 219.44480 * 15 14 5 18 18 N 1.46501 * 109.47053 * 292.71525 * 17 15 14 19 19 C 1.34774 * 119.99963 * 184.13572 * 18 17 15 20 20 O 1.21278 * 120.00017 * 355.63136 * 19 18 17 21 21 C 1.50704 * 119.99762 * 175.62516 * 19 18 17 22 22 C 1.52998 * 115.54639 * 40.73424 * 21 19 18 23 23 N 1.46895 * 109.47277 * 53.23066 * 22 21 19 24 24 C 1.46894 * 111.00391 * 76.14728 * 23 22 21 25 25 C 1.46905 * 110.99884 * 200.10186 * 23 22 21 26 26 C 1.53002 * 117.49783 * 255.02223 * 21 19 18 27 27 C 1.53001 * 59.99980 * 252.51317 * 26 21 19 28 28 H 1.08999 * 109.46728 * 296.10059 * 1 2 3 29 29 H 1.09001 * 109.46825 * 56.09306 * 1 2 3 30 30 H 1.09000 * 109.47401 * 176.10177 * 1 2 3 31 31 H 1.09005 * 110.36582 * 86.08049 * 4 2 1 32 32 H 1.08996 * 110.45733 * 323.80673 * 4 2 1 33 33 H 0.97005 * 119.99439 * 180.02562 * 9 8 6 34 34 H 1.09003 * 109.87974 * 239.51971 * 14 5 4 35 35 H 1.08997 * 110.00631 * 118.43321 * 14 5 4 36 36 H 1.09003 * 109.46957 * 172.71665 * 17 15 14 37 37 H 1.08998 * 109.47040 * 52.72042 * 17 15 14 38 38 H 0.96999 * 119.99519 * 4.41668 * 18 17 15 39 39 H 1.09011 * 109.46792 * 173.22579 * 22 21 19 40 40 H 1.08994 * 109.47279 * 293.22341 * 22 21 19 41 41 H 1.09003 * 109.47454 * 61.17718 * 24 23 22 42 42 H 1.09004 * 109.47121 * 181.17928 * 24 23 22 43 43 H 1.09008 * 109.47175 * 301.17728 * 24 23 22 44 44 H 1.08999 * 109.47081 * 59.99845 * 25 23 22 45 45 H 1.08994 * 109.47082 * 179.97438 * 25 23 22 46 46 H 1.09004 * 109.47103 * 299.99642 * 25 23 22 47 47 H 1.09000 * 117.49957 * 0.02562 * 26 21 19 48 48 H 1.09001 * 117.49610 * 145.02179 * 26 21 19 49 49 H 1.09001 * 117.49874 * 252.50998 * 27 26 21 50 50 H 1.08997 * 117.49612 * 107.49176 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0852 -0.8067 -1.2003 5 7 3.4271 -1.2432 -0.7733 6 6 4.4639 -1.5669 -1.6071 7 1 5.4579 -1.7002 -1.2062 8 6 4.2375 -1.7236 -2.9676 9 7 3.0337 -1.5255 -3.4616 10 14 5.6414 -2.2154 -4.0976 11 1 5.6320 -3.6884 -4.2863 12 1 5.4755 -1.5469 -5.4132 13 1 6.9326 -1.8022 -3.4916 14 6 3.4674 -1.2742 0.6961 15 6 2.0861 -0.8080 1.2023 16 1 1.4478 -1.6632 1.4240 17 6 2.2350 0.0876 2.4338 18 7 2.7428 -0.7056 3.5560 19 6 2.8750 -0.1431 4.7736 20 8 2.6492 1.0390 4.9232 21 6 3.3031 -0.9832 5.9492 22 6 4.4061 -2.0043 5.6636 23 7 5.5519 -1.3266 5.0425 24 6 6.3221 -0.5728 6.0407 25 6 6.4081 -2.2851 4.3310 26 6 2.2307 -1.3679 6.9704 27 6 3.2903 -0.3245 7.3301 28 1 -0.3633 0.4521 0.9229 29 1 -0.3633 0.5733 -0.8529 30 1 -0.3634 -1.0253 -0.0699 31 1 2.1560 -0.1721 -2.0837 32 1 1.4524 -1.6704 -1.4042 33 1 2.8754 -1.6354 -4.4123 34 1 4.2426 -0.5998 1.0599 35 1 3.6661 -2.2884 1.0424 36 1 1.2644 0.5086 2.6964 37 1 2.9336 0.8948 2.2138 38 1 2.9878 -1.6345 3.4216 39 1 4.7217 -2.4691 6.5978 40 1 4.0263 -2.7698 4.9871 41 1 6.7101 -1.2586 6.7940 42 1 7.1523 -0.0640 5.5506 43 1 5.6756 0.1635 6.5183 44 1 5.8294 -2.7796 3.5507 45 1 7.2482 -1.7569 3.8803 46 1 6.7815 -3.0300 5.0337 47 1 1.2154 -1.0137 6.7918 48 1 2.3108 -2.3488 7.4390 49 1 4.0675 -0.6189 8.0353 50 1 2.9723 0.7164 7.3882 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102286938.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:17:40 Heat of formation + Delta-G solvation = 12.169964 kcal Electronic energy + Delta-G solvation = -26976.917419 eV Core-core repulsion = 23426.421363 eV Total energy + Delta-G solvation = -3550.496056 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.23506 -38.27172 -37.46655 -35.85238 -34.45164 -32.86696 -30.69975 -29.46461 -28.01938 -27.69077 -26.00020 -25.21217 -23.61207 -22.67061 -22.42072 -21.95862 -19.87533 -19.72550 -18.86485 -17.16014 -16.68243 -16.02383 -15.59763 -15.36954 -15.17468 -14.86627 -14.62824 -14.35155 -14.12013 -13.68512 -13.66774 -13.04401 -12.70291 -12.66699 -12.60120 -12.44935 -12.09607 -12.06944 -11.82253 -11.80308 -11.67053 -11.49795 -11.41002 -11.09895 -10.80791 -10.78360 -10.64135 -10.28866 -10.16773 -9.98120 -9.87906 -9.81113 -9.63463 -9.37740 -8.74571 -8.57291 -8.51986 -6.75090 -5.69769 -3.05371 2.68224 3.35271 3.40600 3.45980 3.48029 3.52657 3.84643 4.49486 4.50996 4.54439 4.68729 4.86705 5.02725 5.11560 5.20308 5.25907 5.27184 5.32519 5.36207 5.37077 5.47668 5.51238 5.53555 5.60695 5.64972 5.69971 5.79848 5.83716 5.85136 5.93092 5.94040 6.13619 6.21563 6.25543 6.33971 6.54805 6.62358 6.67867 6.69999 6.80958 6.84361 6.86480 7.02635 7.60315 7.63954 7.77208 7.85270 8.32917 8.47044 9.23865 9.84966 10.53122 11.40876 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.015236 B = 0.003748 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.369583 B = 7468.619730 C = 8911.445957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 H 0.071 0.929 4 C 0.177 3.823 5 N -0.605 5.605 6 C -0.226 4.226 7 H 0.075 0.925 8 C -0.007 4.007 9 N -0.920 5.920 10 Si 0.910 3.090 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.144 3.856 15 C -0.108 4.108 16 H 0.075 0.925 17 C 0.135 3.865 18 N -0.712 5.712 19 C 0.566 3.434 20 O -0.551 6.551 21 C -0.154 4.154 22 C 0.092 3.908 23 N -0.542 5.542 24 C 0.024 3.976 25 C 0.025 3.975 26 C -0.151 4.151 27 C -0.146 4.146 28 H 0.044 0.956 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.022 0.978 33 H 0.252 0.748 34 H 0.026 0.974 35 H 0.016 0.984 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.399 0.601 39 H 0.046 0.954 40 H 0.081 0.919 41 H 0.022 0.978 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.023 0.977 47 H 0.100 0.900 48 H 0.102 0.898 49 H 0.098 0.902 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.432 -1.583 20.513 20.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.134 4.134 3 H 0.089 0.911 4 C 0.052 3.948 5 N -0.330 5.330 6 C -0.354 4.354 7 H 0.093 0.907 8 C -0.204 4.204 9 N -0.567 5.567 10 Si 0.741 3.259 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.206 1.206 14 C 0.018 3.982 15 C -0.127 4.127 16 H 0.093 0.907 17 C 0.012 3.988 18 N -0.362 5.362 19 C 0.352 3.648 20 O -0.430 6.430 21 C -0.158 4.158 22 C -0.036 4.036 23 N -0.265 5.265 24 C -0.124 4.124 25 C -0.123 4.123 26 C -0.189 4.189 27 C -0.183 4.183 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.040 0.960 33 H 0.062 0.938 34 H 0.043 0.957 35 H 0.034 0.966 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.234 0.766 39 H 0.064 0.936 40 H 0.099 0.901 41 H 0.041 0.959 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.042 0.958 47 H 0.119 0.881 48 H 0.120 0.880 49 H 0.116 0.884 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.728 -0.439 20.007 20.025 hybrid contribution 1.256 -1.420 -0.177 1.904 sum 0.528 -1.859 19.830 19.924 Atomic orbital electron populations 1.21648 0.95514 1.01417 1.00599 1.22614 0.94616 0.99470 0.96659 0.91102 1.21564 0.84655 0.95314 0.93245 1.44452 1.10729 1.78737 0.99120 1.19035 0.87892 1.40016 0.88459 0.90720 1.24843 0.96725 1.01733 0.97067 1.69928 1.19512 1.55083 1.12219 0.86120 0.81254 0.78149 0.80388 1.21670 1.21722 1.20628 1.21303 0.93450 0.97021 0.86459 1.22463 0.98610 0.98044 0.93631 0.90660 1.21394 0.98790 0.94035 0.84613 1.45824 1.65962 1.15533 1.08841 1.19058 0.75919 0.86853 0.83005 1.90662 1.51635 1.15770 1.84905 1.21487 1.00974 1.02283 0.91014 1.21611 0.89889 0.93642 0.98483 1.61810 1.09343 1.26951 1.28385 1.22445 0.98113 0.97948 0.93864 1.22419 0.97468 0.94446 0.97981 1.23017 0.95132 1.00464 1.00242 1.23017 1.01144 0.99425 0.94750 0.93666 0.92758 0.92918 0.90237 0.96041 0.93768 0.95652 0.96578 0.91869 0.91575 0.76638 0.93608 0.90055 0.95914 0.91396 0.90946 0.90814 0.91035 0.95839 0.88107 0.87957 0.88396 0.87424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 9.31 37.16 0.35 -1.74 16 2 C -0.11 -2.11 3.09 -88.47 -0.27 -2.38 16 3 H 0.07 1.34 8.05 -51.93 -0.42 0.93 16 4 C 0.18 4.26 4.97 -2.53 -0.01 4.24 16 5 N -0.60 -15.44 3.39 -170.07 -0.58 -16.01 16 6 C -0.23 -6.30 10.25 -15.06 -0.15 -6.46 16 7 H 0.07 2.03 7.83 -52.48 -0.41 1.62 16 8 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 9 N -0.92 -26.92 10.41 55.49 0.58 -26.34 16 10 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 C 0.14 2.95 6.51 -3.07 -0.02 2.93 16 15 C -0.11 -1.84 2.49 -88.78 -0.22 -2.06 16 16 H 0.08 1.22 8.04 -51.93 -0.42 0.80 16 17 C 0.14 2.10 5.00 -4.04 -0.02 2.08 16 18 N -0.71 -9.89 5.36 -60.29 -0.32 -10.21 16 19 C 0.57 8.17 6.98 -10.98 -0.08 8.09 16 20 O -0.55 -10.00 16.28 5.56 0.09 -9.91 16 21 C -0.15 -1.63 1.90 -155.66 -0.30 -1.93 16 22 C 0.09 0.86 4.48 -3.83 -0.02 0.84 16 23 N -0.54 -5.88 4.60 -251.26 -1.16 -7.03 16 24 C 0.02 0.24 9.36 60.06 0.56 0.80 16 25 C 0.02 0.25 9.51 60.07 0.57 0.82 16 26 C -0.15 -1.27 9.96 -26.73 -0.27 -1.54 16 27 C -0.15 -1.36 8.44 -26.73 -0.23 -1.59 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.81 8.08 -51.93 -0.42 0.39 16 31 H 0.08 2.16 6.61 -51.93 -0.34 1.82 16 32 H 0.02 0.56 7.98 -51.93 -0.41 0.14 16 33 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.03 0.54 7.75 -51.93 -0.40 0.14 16 35 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 1.16 8.04 -51.93 -0.42 0.74 16 38 H 0.40 4.98 7.34 -40.82 -0.30 4.68 16 39 H 0.05 0.37 7.91 -51.92 -0.41 -0.04 16 40 H 0.08 0.70 7.33 -51.93 -0.38 0.32 16 41 H 0.02 0.19 8.11 -51.93 -0.42 -0.23 16 42 H 0.07 0.66 8.13 -51.93 -0.42 0.23 16 43 H 0.07 0.74 6.52 -51.92 -0.34 0.40 16 44 H 0.07 0.76 8.07 -51.93 -0.42 0.34 16 45 H 0.07 0.73 8.13 -51.93 -0.42 0.30 16 46 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 47 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 49 H 0.10 0.73 8.11 -51.93 -0.42 0.31 16 50 H 0.11 1.18 7.68 -51.93 -0.40 0.78 16 LS Contribution 393.65 15.07 5.93 5.93 Total: -1.00 -32.30 393.65 -9.95 -42.25 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -9.27 Total: 2.45 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -0.20 Total: 1.81 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: -1.48 Total: -59.60 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.30 -9.95 -42.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102286938.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.422 kcal (2) G-P(sol) polarization free energy of solvation -32.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds