Wall clock time and date at job start Tue Mar 31 2020 09:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.91973 * 2 1 4 4 C 1.54910 * 111.00347 * 236.09380 * 2 1 3 5 5 N 1.47426 * 104.83444 * 204.91756 * 4 2 1 6 6 C 1.36931 * 125.64768 * 204.09458 * 5 4 2 7 7 H 1.08005 * 119.99822 * 168.79510 * 6 5 4 8 8 C 1.38807 * 120.00390 * 348.79478 * 6 5 4 9 9 N 1.31626 * 119.99733 * 1.84545 * 8 6 5 10 10 Si 1.86801 * 120.00355 * 181.84120 * 8 6 5 11 11 H 1.48503 * 109.46659 * 94.98073 * 10 8 6 12 12 H 1.48497 * 109.47677 * 214.97736 * 10 8 6 13 13 H 1.48498 * 109.47001 * 334.98425 * 10 8 6 14 14 C 1.47024 * 108.69854 * 24.12945 * 5 4 2 15 15 C 1.54318 * 107.27714 * 358.94224 * 14 5 4 16 16 H 1.08997 * 110.72148 * 96.34535 * 15 14 5 17 17 C 1.53000 * 110.72138 * 219.44480 * 15 14 5 18 18 N 1.46501 * 109.47053 * 292.71525 * 17 15 14 19 19 C 1.34774 * 119.99963 * 184.13572 * 18 17 15 20 20 O 1.21278 * 120.00017 * 355.63136 * 19 18 17 21 21 C 1.50704 * 119.99762 * 175.62516 * 19 18 17 22 22 C 1.52998 * 115.54639 * 40.73424 * 21 19 18 23 23 N 1.46895 * 109.47277 * 53.23066 * 22 21 19 24 24 C 1.46894 * 111.00391 * 76.14728 * 23 22 21 25 25 C 1.46905 * 110.99884 * 200.10186 * 23 22 21 26 26 C 1.53002 * 117.49783 * 255.02223 * 21 19 18 27 27 C 1.53001 * 59.99980 * 252.51317 * 26 21 19 28 28 H 1.08999 * 109.46728 * 296.10059 * 1 2 3 29 29 H 1.09001 * 109.46825 * 56.09306 * 1 2 3 30 30 H 1.09000 * 109.47401 * 176.10177 * 1 2 3 31 31 H 1.09005 * 110.36582 * 86.08049 * 4 2 1 32 32 H 1.08996 * 110.45733 * 323.80673 * 4 2 1 33 33 H 0.97005 * 119.99439 * 180.02562 * 9 8 6 34 34 H 1.09003 * 109.87974 * 239.51971 * 14 5 4 35 35 H 1.08997 * 110.00631 * 118.43321 * 14 5 4 36 36 H 1.09003 * 109.46957 * 172.71665 * 17 15 14 37 37 H 1.08998 * 109.47040 * 52.72042 * 17 15 14 38 38 H 0.96999 * 119.99519 * 4.41668 * 18 17 15 39 39 H 1.09011 * 109.46792 * 173.22579 * 22 21 19 40 40 H 1.08994 * 109.47279 * 293.22341 * 22 21 19 41 41 H 1.09003 * 109.47454 * 61.17718 * 24 23 22 42 42 H 1.09004 * 109.47121 * 181.17928 * 24 23 22 43 43 H 1.09008 * 109.47175 * 301.17728 * 24 23 22 44 44 H 1.08999 * 109.47081 * 59.99845 * 25 23 22 45 45 H 1.08994 * 109.47082 * 179.97438 * 25 23 22 46 46 H 1.09004 * 109.47103 * 299.99642 * 25 23 22 47 47 H 1.09000 * 117.49957 * 0.02562 * 26 21 19 48 48 H 1.09001 * 117.49610 * 145.02179 * 26 21 19 49 49 H 1.09001 * 117.49874 * 252.50998 * 27 26 21 50 50 H 1.08997 * 117.49612 * 107.49176 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0852 -0.8067 -1.2003 5 7 3.4271 -1.2432 -0.7733 6 6 4.4639 -1.5669 -1.6071 7 1 5.4579 -1.7002 -1.2062 8 6 4.2375 -1.7236 -2.9676 9 7 3.0337 -1.5255 -3.4616 10 14 5.6414 -2.2154 -4.0976 11 1 5.6320 -3.6884 -4.2863 12 1 5.4755 -1.5469 -5.4132 13 1 6.9326 -1.8022 -3.4916 14 6 3.4674 -1.2742 0.6961 15 6 2.0861 -0.8080 1.2023 16 1 1.4478 -1.6632 1.4240 17 6 2.2350 0.0876 2.4338 18 7 2.7428 -0.7056 3.5560 19 6 2.8750 -0.1431 4.7736 20 8 2.6492 1.0390 4.9232 21 6 3.3031 -0.9832 5.9492 22 6 4.4061 -2.0043 5.6636 23 7 5.5519 -1.3266 5.0425 24 6 6.3221 -0.5728 6.0407 25 6 6.4081 -2.2851 4.3310 26 6 2.2307 -1.3679 6.9704 27 6 3.2903 -0.3245 7.3301 28 1 -0.3633 0.4521 0.9229 29 1 -0.3633 0.5733 -0.8529 30 1 -0.3634 -1.0253 -0.0699 31 1 2.1560 -0.1721 -2.0837 32 1 1.4524 -1.6704 -1.4042 33 1 2.8754 -1.6354 -4.4123 34 1 4.2426 -0.5998 1.0599 35 1 3.6661 -2.2884 1.0424 36 1 1.2644 0.5086 2.6964 37 1 2.9336 0.8948 2.2138 38 1 2.9878 -1.6345 3.4216 39 1 4.7217 -2.4691 6.5978 40 1 4.0263 -2.7698 4.9871 41 1 6.7101 -1.2586 6.7940 42 1 7.1523 -0.0640 5.5506 43 1 5.6756 0.1635 6.5183 44 1 5.8294 -2.7796 3.5507 45 1 7.2482 -1.7569 3.8803 46 1 6.7815 -3.0300 5.0337 47 1 1.2154 -1.0137 6.7918 48 1 2.3108 -2.3488 7.4390 49 1 4.0675 -0.6189 8.0353 50 1 2.9723 0.7164 7.3882 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102286938.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:17:40 Heat of formation + Delta-G solvation = -9.262774 kcal Electronic energy + Delta-G solvation = -26977.846813 eV Core-core repulsion = 23426.421363 eV Total energy + Delta-G solvation = -3551.425450 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.26215 -39.75184 -38.51986 -36.69734 -35.89271 -34.61567 -32.53749 -30.91222 -28.87205 -28.43795 -27.82179 -26.74225 -25.00508 -23.67610 -23.33639 -22.91640 -21.51869 -21.15716 -20.11835 -18.79791 -18.00989 -17.21509 -16.84832 -16.51534 -16.24648 -16.02964 -15.83693 -15.60489 -15.40322 -15.18420 -14.70356 -14.57838 -14.23507 -14.00108 -13.46278 -13.41304 -13.35387 -13.28232 -13.06819 -12.87731 -12.80981 -12.77120 -12.63185 -12.57249 -12.45103 -12.35300 -11.93732 -11.84663 -11.60784 -11.41283 -11.37843 -11.29129 -11.00699 -10.72952 -10.64486 -9.97005 -9.25422 -8.82160 -7.83955 -5.21944 1.46132 1.47459 1.56722 1.65569 2.27537 2.49957 2.73172 3.11961 3.32280 3.64040 3.73886 3.77996 3.83563 3.87021 3.92728 3.99699 4.10498 4.31085 4.39986 4.41117 4.51449 4.56106 4.57542 4.63716 4.74065 4.76109 4.76954 4.78662 4.80789 4.87198 4.96509 4.99592 5.01935 5.05301 5.07766 5.10246 5.18867 5.24552 5.37614 5.44482 5.49029 5.55856 5.71461 5.81728 6.09810 6.10795 6.25775 6.66682 7.11416 7.35799 7.79127 8.45629 9.25245 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.015236 B = 0.003748 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.369583 B = 7468.619730 C = 8911.445957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.103 4.103 3 H 0.065 0.935 4 C 0.184 3.816 5 N -0.628 5.628 6 C -0.242 4.242 7 H 0.077 0.923 8 C -0.062 4.062 9 N -0.947 5.947 10 Si 0.976 3.024 11 H -0.285 1.285 12 H -0.294 1.294 13 H -0.270 1.270 14 C 0.144 3.856 15 C -0.087 4.087 16 H 0.093 0.907 17 C 0.148 3.852 18 N -0.706 5.706 19 C 0.562 3.438 20 O -0.595 6.595 21 C -0.166 4.166 22 C 0.096 3.904 23 N -0.567 5.567 24 C 0.027 3.973 25 C 0.028 3.972 26 C -0.130 4.130 27 C -0.146 4.146 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.040 0.960 32 H -0.002 1.002 33 H 0.247 0.753 34 H 0.018 0.982 35 H 0.026 0.974 36 H 0.073 0.927 37 H 0.044 0.956 38 H 0.408 0.592 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.041 0.959 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.040 0.960 47 H 0.094 0.906 48 H 0.133 0.867 49 H 0.120 0.880 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.385 -2.955 22.774 22.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.124 4.124 3 H 0.083 0.917 4 C 0.059 3.941 5 N -0.354 5.354 6 C -0.371 4.371 7 H 0.094 0.906 8 C -0.255 4.255 9 N -0.596 5.596 10 Si 0.805 3.195 11 H -0.212 1.212 12 H -0.221 1.221 13 H -0.194 1.194 14 C 0.019 3.981 15 C -0.106 4.106 16 H 0.112 0.888 17 C 0.024 3.976 18 N -0.356 5.356 19 C 0.350 3.650 20 O -0.476 6.476 21 C -0.169 4.169 22 C -0.032 4.032 23 N -0.291 5.291 24 C -0.121 4.121 25 C -0.120 4.120 26 C -0.168 4.168 27 C -0.183 4.183 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.016 0.984 33 H 0.057 0.943 34 H 0.036 0.964 35 H 0.044 0.956 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.244 0.756 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.059 0.941 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.058 0.942 47 H 0.113 0.887 48 H 0.151 0.849 49 H 0.139 0.861 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.672 -1.834 22.300 22.385 hybrid contribution 1.263 -0.955 -0.863 1.803 sum 0.590 -2.789 21.437 21.626 Atomic orbital electron populations 1.21598 0.92693 1.01997 1.02145 1.22468 0.96849 0.98317 0.94718 0.91661 1.21332 0.84274 0.94280 0.94228 1.44776 1.10666 1.78816 1.01144 1.19395 0.88816 1.39634 0.89300 0.90552 1.25659 0.99178 1.02193 0.98520 1.70151 1.21354 1.56079 1.12038 0.85094 0.78789 0.77645 0.78013 1.21204 1.22064 1.19446 1.21406 0.95412 0.97376 0.83893 1.22296 0.96507 0.98432 0.93392 0.88834 1.21112 0.98769 0.93186 0.84557 1.45751 1.65682 1.15735 1.08435 1.19736 0.74787 0.86687 0.83797 1.90641 1.53543 1.17820 1.85592 1.21442 1.02770 1.02870 0.89851 1.21642 0.88818 0.93133 0.99624 1.61783 1.10177 1.27775 1.29329 1.22398 0.97645 0.98057 0.93986 1.22356 0.96977 0.94516 0.98126 1.23145 0.94133 1.01470 0.98014 1.23052 1.02304 0.98689 0.94241 0.90860 0.92678 0.92628 0.94202 0.98405 0.94339 0.96435 0.95617 0.90904 0.93807 0.75613 0.91368 0.89366 0.94075 0.92112 0.91745 0.91523 0.91973 0.94150 0.88742 0.84903 0.86149 0.89616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.74 9.31 71.98 0.67 -3.07 16 2 C -0.10 -3.81 3.09 -9.40 -0.03 -3.84 16 3 H 0.06 2.49 8.05 -2.39 -0.02 2.47 16 4 C 0.18 9.09 4.97 86.86 0.43 9.53 16 5 N -0.63 -32.69 3.39 -691.99 -2.35 -35.04 16 6 C -0.24 -13.78 10.25 84.03 0.86 -12.92 16 7 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 8 C -0.06 -3.57 5.48 84.86 0.47 -3.11 16 9 N -0.95 -57.15 10.41 21.65 0.23 -56.93 16 10 Si 0.98 46.01 29.55 68.60 2.03 48.04 16 11 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 12 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 13 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 14 C 0.14 5.88 6.51 86.73 0.56 6.44 16 15 C -0.09 -2.86 2.49 -9.60 -0.02 -2.88 16 16 H 0.09 2.79 8.04 -2.39 -0.02 2.77 16 17 C 0.15 4.44 5.00 86.38 0.43 4.88 16 18 N -0.71 -18.63 5.36 -463.06 -2.48 -21.11 16 19 C 0.56 15.61 6.98 87.66 0.61 16.22 16 20 O -0.59 -21.50 16.28 -3.02 -0.05 -21.55 16 21 C -0.17 -3.14 1.90 -52.93 -0.10 -3.24 16 22 C 0.10 1.51 4.48 86.30 0.39 1.89 16 23 N -0.57 -11.34 4.60 -948.84 -4.36 -15.70 16 24 C 0.03 0.48 9.36 127.69 1.20 1.68 16 25 C 0.03 0.51 9.51 127.69 1.21 1.73 16 26 C -0.13 -1.78 9.96 30.60 0.30 -1.47 16 27 C -0.15 -2.39 8.44 30.59 0.26 -2.14 16 28 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.05 1.61 8.14 -2.39 -0.02 1.60 16 30 H 0.05 1.62 8.08 -2.39 -0.02 1.60 16 31 H 0.04 2.26 6.61 -2.38 -0.02 2.25 16 32 H 0.00 -0.11 7.98 -2.39 -0.02 -0.13 16 33 H 0.25 14.47 8.31 -92.70 -0.77 13.70 16 34 H 0.02 0.75 7.75 -2.39 -0.02 0.73 16 35 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.04 1.53 8.04 -2.39 -0.02 1.51 16 38 H 0.41 9.38 7.34 -92.71 -0.68 8.70 16 39 H 0.07 0.80 7.91 -2.38 -0.02 0.78 16 40 H 0.09 1.25 7.33 -2.39 -0.02 1.23 16 41 H 0.04 0.57 8.11 -2.39 -0.02 0.55 16 42 H 0.06 1.14 8.13 -2.39 -0.02 1.12 16 43 H 0.06 1.24 6.52 -2.38 -0.02 1.22 16 44 H 0.07 1.29 8.07 -2.39 -0.02 1.27 16 45 H 0.06 1.22 8.13 -2.39 -0.02 1.21 16 46 H 0.04 0.59 8.14 -2.38 -0.02 0.57 16 47 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.13 1.04 8.14 -2.39 -0.02 1.03 16 49 H 0.12 1.41 8.11 -2.39 -0.02 1.40 16 50 H 0.09 1.82 7.68 -2.39 -0.02 1.80 16 Total: -1.00 -72.29 393.65 0.46 -71.83 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.21 Total: 20.76 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 7.24 Total: 9.69 kcal Atomic # 7 Polarization: -119.81 SS G_CDS: -8.97 Total: -128.78 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.05 Total: -21.55 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -72.29 0.46 -71.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102286938.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.565 kcal (2) G-P(sol) polarization free energy of solvation -72.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds