Wall clock time and date at job start Tue Mar 31 2020 09:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08999 * 109.47233 * 2 1 4 4 C 1.53001 * 109.47185 * 239.99674 * 2 1 3 5 5 C 1.52998 * 109.46836 * 175.00120 * 4 2 1 6 6 H 1.09004 * 109.47075 * 55.00731 * 5 4 2 7 7 C 1.53001 * 109.46694 * 175.00065 * 5 4 2 8 8 N 1.46498 * 109.47338 * 295.00247 * 5 4 2 9 9 C 1.34767 * 120.00071 * 155.00226 * 8 5 4 10 10 O 1.21281 * 120.00366 * 359.97438 * 9 8 5 11 11 C 1.50700 * 120.00145 * 179.97438 * 9 8 5 12 12 C 1.54136 * 110.75025 * 206.01140 * 11 9 8 13 13 C 1.55167 * 102.88651 * 98.16228 * 12 11 9 14 14 C 1.54839 * 101.65616 * 36.15655 * 13 12 11 15 15 N 1.47860 * 111.38143 * 325.29591 * 11 9 8 16 16 C 1.47955 * 108.37129 * 120.68565 * 15 11 9 17 17 C 1.54838 * 105.06727 * 337.18331 * 16 15 11 18 18 C 1.54138 * 110.74328 * 84.57230 * 11 9 8 19 19 N 1.46502 * 109.46717 * 119.99920 * 2 1 3 20 20 C 1.36933 * 120.00143 * 275.00096 * 19 2 1 21 21 H 1.08001 * 120.00012 * 359.97438 * 20 19 2 22 22 C 1.38813 * 120.00050 * 180.02562 * 20 19 2 23 23 N 1.31612 * 119.99906 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99820 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46933 * 90.00116 * 24 22 20 26 26 H 1.48495 * 109.47013 * 209.99635 * 24 22 20 27 27 H 1.48494 * 109.47250 * 330.00466 * 24 22 20 28 28 H 1.08999 * 109.47233 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47033 * 300.00064 * 1 2 3 30 30 H 1.09005 * 109.46567 * 60.00333 * 1 2 3 31 31 H 1.09001 * 109.47114 * 55.00134 * 4 2 1 32 32 H 1.08998 * 109.46947 * 295.00450 * 4 2 1 33 33 H 1.08999 * 109.47362 * 300.00194 * 7 5 4 34 34 H 1.08998 * 109.47200 * 60.00688 * 7 5 4 35 35 H 1.09003 * 109.47002 * 179.97438 * 7 5 4 36 36 H 0.97001 * 119.99695 * 334.99967 * 8 5 4 37 37 H 1.08998 * 110.72897 * 339.81954 * 12 11 9 38 38 H 1.08992 * 110.73658 * 216.50984 * 12 11 9 39 39 H 1.08996 * 110.99289 * 154.25063 * 13 12 11 40 40 H 1.09007 * 110.98542 * 278.06801 * 13 12 11 41 41 H 1.09001 * 110.32292 * 82.22949 * 14 13 12 42 42 H 1.08999 * 110.32238 * 204.43614 * 14 13 12 43 43 H 1.09008 * 110.31806 * 218.28753 * 16 15 11 44 44 H 1.08998 * 110.40931 * 96.13165 * 16 15 11 45 45 H 1.08995 * 110.98861 * 278.58014 * 17 16 15 46 46 H 1.09002 * 111.01728 * 154.78256 * 17 16 15 47 47 H 1.08997 * 110.73153 * 20.19181 * 18 11 9 48 48 H 1.09007 * 110.73010 * 143.48855 * 18 11 9 49 49 H 0.97001 * 119.99871 * 94.99648 * 19 2 1 50 50 H 0.97002 * 119.99605 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 1 3.9955 -0.9924 -0.3867 7 6 4.0852 -1.4384 -2.4923 8 7 3.9481 0.7893 -1.4923 9 6 5.1612 1.2134 -1.0865 10 8 5.9357 0.4340 -0.5730 11 6 5.5556 2.6562 -1.2709 12 6 7.0878 2.7957 -1.3648 13 6 7.3353 2.8704 -2.8948 14 6 6.1022 3.6758 -3.3723 15 7 4.9869 3.2156 -2.5159 16 6 4.1316 4.3694 -2.1605 17 6 3.7362 4.1369 -0.6816 18 6 5.0360 3.5177 -0.1032 19 7 2.0183 -0.6906 1.1962 20 6 2.1491 -0.0075 2.3758 21 1 1.8926 1.0405 2.4242 22 6 2.6122 -0.6618 3.5091 23 7 2.9261 -1.9385 3.4497 24 14 2.7912 0.2703 5.1180 25 1 1.5237 0.1792 5.8865 26 1 3.8960 -0.3229 5.9134 27 1 3.0959 1.6955 4.8332 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 1.6055 -0.2618 -2.1370 32 1 1.7517 -1.7715 -1.2055 33 1 3.8001 -2.4820 -2.3593 34 1 3.6548 -1.0594 -3.4192 35 1 5.1715 -1.3612 -2.5385 36 1 3.3286 1.4127 -1.9027 37 1 7.5816 1.9237 -0.9362 38 1 7.4228 3.7099 -0.8748 39 1 8.2597 3.4043 -3.1152 40 1 7.3465 1.8743 -3.3375 41 1 6.2705 4.7437 -3.2333 42 1 5.8901 3.4583 -4.4191 43 1 3.2428 4.3901 -2.7913 44 1 4.6886 5.3008 -2.2617 45 1 2.9032 3.4381 -0.6054 46 1 3.4991 5.0792 -0.1876 47 1 4.8146 2.8973 0.7652 48 1 5.7546 4.2969 0.1510 49 1 2.2490 -1.6318 1.1527 50 1 3.2494 -2.3958 4.2418 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134858940.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:23:56 Heat of formation + Delta-G solvation = -29.985483 kcal Electronic energy + Delta-G solvation = -28109.495740 eV Core-core repulsion = 24557.171686 eV Total energy + Delta-G solvation = -3552.324054 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.86336 -38.45467 -36.62344 -34.42710 -33.95954 -32.03658 -31.41816 -30.43340 -28.54299 -28.16970 -26.21928 -25.55116 -23.59077 -22.83713 -21.64787 -20.80613 -20.54959 -19.57099 -19.12578 -17.39375 -17.01839 -16.23034 -15.60171 -15.09847 -14.70239 -14.49751 -14.18173 -14.01768 -13.82759 -13.63360 -13.46042 -13.10236 -12.82382 -12.67499 -12.40292 -12.14453 -12.04613 -11.85394 -11.66980 -11.65602 -11.56283 -11.49847 -11.12913 -11.02205 -10.96009 -10.89564 -10.78385 -10.54273 -10.44793 -10.30506 -10.16393 -9.81640 -9.56349 -9.47045 -8.82186 -8.57437 -8.45336 -6.85599 -5.67512 -2.94869 3.06117 3.47756 3.52247 3.54758 3.64150 3.81386 4.40695 4.44535 4.66528 4.72624 4.85761 4.93539 5.00505 5.13753 5.22978 5.29535 5.39207 5.44525 5.53511 5.58805 5.59705 5.68510 5.69935 5.74866 5.78066 5.83243 5.87026 5.99110 6.00876 6.05804 6.07209 6.10894 6.13734 6.18934 6.24840 6.38201 6.46258 6.53073 6.62933 6.66350 6.77685 6.84152 6.93925 7.11257 7.15708 7.76646 8.08730 8.50965 8.79672 9.62110 10.20651 10.54917 11.55401 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.013166 B = 0.005017 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.108527 B = 5579.799527 C = 6170.685627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.173 3.827 3 H 0.045 0.955 4 C -0.130 4.130 5 C 0.142 3.858 6 H 0.103 0.897 7 C -0.158 4.158 8 N -0.699 5.699 9 C 0.544 3.456 10 O -0.541 6.541 11 C 0.071 3.929 12 C -0.127 4.127 13 C -0.132 4.132 14 C 0.036 3.964 15 N -0.504 5.504 16 C 0.032 3.968 17 C -0.133 4.133 18 C -0.128 4.128 19 N -0.720 5.720 20 C -0.231 4.231 21 H 0.066 0.934 22 C -0.012 4.012 23 N -0.931 5.931 24 Si 0.901 3.099 25 H -0.292 1.292 26 H -0.292 1.292 27 H -0.284 1.284 28 H 0.045 0.955 29 H 0.051 0.949 30 H 0.033 0.967 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.398 0.602 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.051 0.949 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.052 0.948 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.087 0.913 48 H 0.076 0.924 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.541 12.432 -16.300 20.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.063 3.937 3 H 0.063 0.937 4 C -0.169 4.169 5 C 0.038 3.962 6 H 0.121 0.879 7 C -0.217 4.217 8 N -0.349 5.349 9 C 0.328 3.672 10 O -0.417 6.417 11 C -0.022 4.022 12 C -0.166 4.166 13 C -0.170 4.170 14 C -0.092 4.092 15 N -0.229 5.229 16 C -0.095 4.095 17 C -0.172 4.172 18 C -0.167 4.167 19 N -0.361 5.361 20 C -0.363 4.363 21 H 0.084 0.916 22 C -0.208 4.208 23 N -0.580 5.580 24 Si 0.733 3.267 25 H -0.219 1.219 26 H -0.219 1.219 27 H -0.210 1.210 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.233 0.767 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.070 0.930 45 H 0.099 0.901 46 H 0.096 0.904 47 H 0.106 0.894 48 H 0.095 0.905 49 H 0.216 0.784 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.787 11.562 -16.083 20.166 hybrid contribution 0.229 1.106 1.196 1.645 sum 4.016 12.668 -14.887 19.956 Atomic orbital electron populations 1.22460 0.99652 1.00753 0.99664 1.20208 0.91415 0.95514 0.86574 0.93709 1.22154 0.94011 1.02008 0.98724 1.21010 0.94858 0.80740 0.99626 0.87900 1.22157 1.01403 0.99928 0.98187 1.45795 1.16530 1.11060 1.61493 1.19746 0.81972 0.88201 0.77248 1.90700 1.51602 1.55549 1.43890 1.22395 0.95357 0.93590 0.90825 1.22831 0.93409 1.03700 0.96627 1.22776 0.97620 1.01007 0.95584 1.23274 0.89995 0.97640 0.98270 1.65276 1.17497 1.27220 1.12917 1.23335 0.97766 0.91999 0.96426 1.22818 0.98114 1.01616 0.94603 1.22857 0.97309 0.98676 0.97821 1.42391 1.77944 1.10553 1.05235 1.19134 1.36204 0.93599 0.87347 0.91607 1.24678 1.02340 0.95934 0.97860 1.69644 1.51023 1.08638 1.28651 0.86279 0.77192 0.78816 0.84444 1.21920 1.21854 1.20972 0.93577 0.92999 0.94756 0.92153 0.90817 0.92027 0.93187 0.92703 0.76728 0.88660 0.90814 0.90728 0.90660 0.93024 0.90066 0.89817 0.93015 0.90063 0.90398 0.89433 0.90513 0.78364 0.93648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 9.49 37.16 0.35 -2.58 16 2 C 0.17 3.33 2.84 -67.92 -0.19 3.13 16 3 H 0.04 0.88 7.56 -51.93 -0.39 0.49 16 4 C -0.13 -2.08 4.29 -26.73 -0.11 -2.20 16 5 C 0.14 2.44 2.52 -67.93 -0.17 2.27 16 6 H 0.10 2.29 7.06 -51.93 -0.37 1.92 16 7 C -0.16 -2.36 9.48 37.16 0.35 -2.01 16 8 N -0.70 -11.13 4.37 -53.81 -0.24 -11.36 16 9 C 0.54 9.50 6.64 -10.99 -0.07 9.43 16 10 O -0.54 -11.75 15.33 5.56 0.09 -11.67 16 11 C 0.07 0.96 0.91 -131.04 -0.12 0.84 16 12 C -0.13 -1.58 5.99 -24.99 -0.15 -1.73 16 13 C -0.13 -1.35 7.07 -24.61 -0.17 -1.52 16 14 C 0.04 0.34 6.72 -2.27 -0.02 0.32 16 15 N -0.50 -5.63 4.79 -214.06 -1.03 -6.65 16 16 C 0.03 0.31 6.72 -2.27 -0.02 0.29 16 17 C -0.13 -1.45 7.07 -24.62 -0.17 -1.63 16 18 C -0.13 -1.67 6.03 -24.99 -0.15 -1.82 16 19 N -0.72 -17.79 4.49 -53.42 -0.24 -18.03 16 20 C -0.23 -6.43 9.93 -15.06 -0.15 -6.58 16 21 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -28.67 13.06 55.49 0.72 -27.94 16 24 Si 0.90 22.97 29.55 -169.99 -5.02 17.94 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 27 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.40 5.59 8.05 -40.82 -0.33 5.26 16 37 H 0.09 1.42 6.85 -51.93 -0.36 1.06 16 38 H 0.07 0.80 7.30 -51.93 -0.38 0.42 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.05 0.43 7.08 -51.93 -0.37 0.06 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 44 H 0.05 0.43 7.08 -51.93 -0.37 0.06 16 45 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.09 1.42 7.84 -51.93 -0.41 1.01 16 48 H 0.08 0.87 7.30 -51.93 -0.38 0.49 16 49 H 0.38 10.22 7.80 -40.82 -0.32 9.90 16 50 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 388.16 15.07 5.85 5.85 Total: -1.00 -32.24 388.16 -9.88 -42.12 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: -9.13 Total: 13.97 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -0.89 Total: -4.22 kcal Atomic # 7 Polarization: -63.21 SS G_CDS: -0.78 Total: -63.99 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.24 -9.88 -42.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134858940.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.132 kcal (2) G-P(sol) polarization free energy of solvation -32.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds