Wall clock time and date at job start Tue Mar 31 2020 09:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08999 * 109.47233 * 2 1 4 4 C 1.53001 * 109.47185 * 239.99674 * 2 1 3 5 5 C 1.52998 * 109.46836 * 175.00120 * 4 2 1 6 6 H 1.09004 * 109.47075 * 55.00731 * 5 4 2 7 7 C 1.53001 * 109.46694 * 175.00065 * 5 4 2 8 8 N 1.46498 * 109.47338 * 295.00247 * 5 4 2 9 9 C 1.34767 * 120.00071 * 155.00226 * 8 5 4 10 10 O 1.21281 * 120.00366 * 359.97438 * 9 8 5 11 11 C 1.50700 * 120.00145 * 179.97438 * 9 8 5 12 12 C 1.54136 * 110.75025 * 206.01140 * 11 9 8 13 13 C 1.55167 * 102.88651 * 98.16228 * 12 11 9 14 14 C 1.54839 * 101.65616 * 36.15655 * 13 12 11 15 15 N 1.47860 * 111.38143 * 325.29591 * 11 9 8 16 16 C 1.47955 * 108.37129 * 120.68565 * 15 11 9 17 17 C 1.54838 * 105.06727 * 337.18331 * 16 15 11 18 18 C 1.54138 * 110.74328 * 84.57230 * 11 9 8 19 19 N 1.46502 * 109.46717 * 119.99920 * 2 1 3 20 20 C 1.36933 * 120.00143 * 275.00096 * 19 2 1 21 21 H 1.08001 * 120.00012 * 359.97438 * 20 19 2 22 22 C 1.38813 * 120.00050 * 180.02562 * 20 19 2 23 23 N 1.31612 * 119.99906 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99820 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46933 * 90.00116 * 24 22 20 26 26 H 1.48495 * 109.47013 * 209.99635 * 24 22 20 27 27 H 1.48494 * 109.47250 * 330.00466 * 24 22 20 28 28 H 1.08999 * 109.47233 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47033 * 300.00064 * 1 2 3 30 30 H 1.09005 * 109.46567 * 60.00333 * 1 2 3 31 31 H 1.09001 * 109.47114 * 55.00134 * 4 2 1 32 32 H 1.08998 * 109.46947 * 295.00450 * 4 2 1 33 33 H 1.08999 * 109.47362 * 300.00194 * 7 5 4 34 34 H 1.08998 * 109.47200 * 60.00688 * 7 5 4 35 35 H 1.09003 * 109.47002 * 179.97438 * 7 5 4 36 36 H 0.97001 * 119.99695 * 334.99967 * 8 5 4 37 37 H 1.08998 * 110.72897 * 339.81954 * 12 11 9 38 38 H 1.08992 * 110.73658 * 216.50984 * 12 11 9 39 39 H 1.08996 * 110.99289 * 154.25063 * 13 12 11 40 40 H 1.09007 * 110.98542 * 278.06801 * 13 12 11 41 41 H 1.09001 * 110.32292 * 82.22949 * 14 13 12 42 42 H 1.08999 * 110.32238 * 204.43614 * 14 13 12 43 43 H 1.09008 * 110.31806 * 218.28753 * 16 15 11 44 44 H 1.08998 * 110.40931 * 96.13165 * 16 15 11 45 45 H 1.08995 * 110.98861 * 278.58014 * 17 16 15 46 46 H 1.09002 * 111.01728 * 154.78256 * 17 16 15 47 47 H 1.08997 * 110.73153 * 20.19181 * 18 11 9 48 48 H 1.09007 * 110.73010 * 143.48855 * 18 11 9 49 49 H 0.97001 * 119.99871 * 94.99648 * 19 2 1 50 50 H 0.97002 * 119.99605 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 1 3.9955 -0.9924 -0.3867 7 6 4.0852 -1.4384 -2.4923 8 7 3.9481 0.7893 -1.4923 9 6 5.1612 1.2134 -1.0865 10 8 5.9357 0.4340 -0.5730 11 6 5.5556 2.6562 -1.2709 12 6 7.0878 2.7957 -1.3648 13 6 7.3353 2.8704 -2.8948 14 6 6.1022 3.6758 -3.3723 15 7 4.9869 3.2156 -2.5159 16 6 4.1316 4.3694 -2.1605 17 6 3.7362 4.1369 -0.6816 18 6 5.0360 3.5177 -0.1032 19 7 2.0183 -0.6906 1.1962 20 6 2.1491 -0.0075 2.3758 21 1 1.8926 1.0405 2.4242 22 6 2.6122 -0.6618 3.5091 23 7 2.9261 -1.9385 3.4497 24 14 2.7912 0.2703 5.1180 25 1 1.5237 0.1792 5.8865 26 1 3.8960 -0.3229 5.9134 27 1 3.0959 1.6955 4.8332 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 1.6055 -0.2618 -2.1370 32 1 1.7517 -1.7715 -1.2055 33 1 3.8001 -2.4820 -2.3593 34 1 3.6548 -1.0594 -3.4192 35 1 5.1715 -1.3612 -2.5385 36 1 3.3286 1.4127 -1.9027 37 1 7.5816 1.9237 -0.9362 38 1 7.4228 3.7099 -0.8748 39 1 8.2597 3.4043 -3.1152 40 1 7.3465 1.8743 -3.3375 41 1 6.2705 4.7437 -3.2333 42 1 5.8901 3.4583 -4.4191 43 1 3.2428 4.3901 -2.7913 44 1 4.6886 5.3008 -2.2617 45 1 2.9032 3.4381 -0.6054 46 1 3.4991 5.0792 -0.1876 47 1 4.8146 2.8973 0.7652 48 1 5.7546 4.2969 0.1510 49 1 2.2490 -1.6318 1.1527 50 1 3.2494 -2.3958 4.2418 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134858940.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:23:56 Heat of formation + Delta-G solvation = -52.581764 kcal Electronic energy + Delta-G solvation = -28110.475588 eV Core-core repulsion = 24557.171686 eV Total energy + Delta-G solvation = -3553.303902 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.94136 -39.72654 -38.18660 -36.04674 -34.90812 -33.94845 -32.44740 -31.79587 -30.41181 -29.10063 -27.58898 -26.41831 -25.66858 -24.09259 -22.49009 -21.99197 -21.65793 -21.12132 -20.36412 -19.23665 -18.35647 -17.34648 -16.89732 -16.56766 -16.08122 -15.78928 -15.62993 -15.41901 -15.15679 -15.01773 -14.53783 -14.43163 -14.25278 -13.96331 -13.59601 -13.43674 -13.31238 -13.19655 -13.04315 -12.93519 -12.79220 -12.67633 -12.52733 -12.43810 -12.21541 -12.20982 -12.06876 -11.92159 -11.85783 -11.72522 -11.54621 -11.41998 -11.34177 -10.91030 -10.77528 -9.86503 -9.47511 -8.93997 -7.91215 -5.16357 1.41235 1.43728 1.50769 1.74066 2.37300 2.56105 2.90044 3.43244 3.47269 3.51818 3.74291 3.83377 3.99635 4.00872 4.08297 4.12167 4.17593 4.20874 4.41179 4.44475 4.51530 4.56014 4.66403 4.68719 4.72026 4.79403 4.83392 4.84778 4.90308 4.95896 4.97806 5.04031 5.05854 5.07837 5.10503 5.16535 5.21772 5.23833 5.25037 5.35745 5.44309 5.52968 5.64007 5.70020 5.79231 6.01907 6.31677 6.77554 7.37268 7.47152 8.17633 8.37823 9.32838 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.013166 B = 0.005017 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.108527 B = 5579.799527 C = 6170.685627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.166 3.834 3 H 0.041 0.959 4 C -0.117 4.117 5 C 0.144 3.856 6 H 0.043 0.957 7 C -0.147 4.147 8 N -0.688 5.688 9 C 0.532 3.468 10 O -0.597 6.597 11 C 0.076 3.924 12 C -0.131 4.131 13 C -0.126 4.126 14 C 0.039 3.961 15 N -0.511 5.511 16 C 0.038 3.962 17 C -0.130 4.130 18 C -0.130 4.130 19 N -0.731 5.731 20 C -0.222 4.222 21 H 0.070 0.930 22 C -0.079 4.079 23 N -0.970 5.970 24 Si 0.960 3.040 25 H -0.285 1.285 26 H -0.301 1.301 27 H -0.272 1.272 28 H 0.041 0.959 29 H 0.030 0.970 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.033 0.967 36 H 0.411 0.589 37 H 0.059 0.941 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.056 0.944 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.101 0.899 44 H 0.073 0.927 45 H 0.064 0.936 46 H 0.096 0.904 47 H 0.043 0.957 48 H 0.096 0.904 49 H 0.369 0.631 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.342 15.528 -19.021 24.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.058 3.942 3 H 0.059 0.941 4 C -0.156 4.156 5 C 0.039 3.961 6 H 0.062 0.938 7 C -0.206 4.206 8 N -0.337 5.337 9 C 0.318 3.682 10 O -0.477 6.477 11 C -0.017 4.017 12 C -0.170 4.170 13 C -0.164 4.164 14 C -0.088 4.088 15 N -0.236 5.236 16 C -0.089 4.089 17 C -0.168 4.168 18 C -0.169 4.169 19 N -0.371 5.371 20 C -0.354 4.354 21 H 0.088 0.912 22 C -0.271 4.271 23 N -0.622 5.622 24 Si 0.790 3.210 25 H -0.212 1.212 26 H -0.228 1.228 27 H -0.198 1.198 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.121 0.879 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.053 0.947 36 H 0.247 0.753 37 H 0.078 0.922 38 H 0.111 0.889 39 H 0.117 0.883 40 H 0.075 0.925 41 H 0.093 0.907 42 H 0.113 0.887 43 H 0.119 0.881 44 H 0.092 0.908 45 H 0.083 0.917 46 H 0.115 0.885 47 H 0.062 0.938 48 H 0.115 0.885 49 H 0.200 0.800 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.527 14.722 -18.865 24.063 hybrid contribution 0.589 0.166 1.974 2.067 sum 3.117 14.889 -16.891 22.731 Atomic orbital electron populations 1.22297 0.97604 1.00855 1.00723 1.20482 0.92643 0.95110 0.85925 0.94103 1.22062 0.92807 1.02124 0.98568 1.20828 0.95588 0.81663 0.98043 0.93828 1.22043 1.00110 1.00129 0.98282 1.45716 1.16357 1.10813 1.60849 1.20598 0.81669 0.89785 0.76110 1.90668 1.53196 1.57562 1.46283 1.22224 0.96097 0.90993 0.92387 1.22844 0.92525 1.02975 0.98628 1.22760 0.99560 1.00722 0.93401 1.23361 0.88508 0.98597 0.98354 1.65239 1.18279 1.28559 1.11547 1.23404 0.98289 0.92042 0.95132 1.22816 0.96117 1.01792 0.96036 1.22860 0.99380 0.98524 0.96132 1.42596 1.78185 1.10043 1.06255 1.19484 1.33822 0.93738 0.88375 0.91238 1.25430 1.03633 0.96847 1.01193 1.69806 1.53194 1.10191 1.28960 0.85318 0.76858 0.78053 0.80728 1.21169 1.22830 1.19757 0.93952 0.95040 0.90542 0.87887 0.90677 0.91280 0.90175 0.94749 0.75261 0.92172 0.88885 0.88300 0.92505 0.90734 0.88741 0.88075 0.90842 0.91711 0.88526 0.93807 0.88512 0.79951 0.94466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.17 9.49 71.99 0.68 -4.49 16 2 C 0.17 6.29 2.84 44.99 0.13 6.42 16 3 H 0.04 1.58 7.56 -2.39 -0.02 1.56 16 4 C -0.12 -3.57 4.29 30.59 0.13 -3.44 16 5 C 0.14 5.01 2.52 44.99 0.11 5.13 16 6 H 0.04 2.07 7.06 -2.38 -0.02 2.06 16 7 C -0.15 -4.33 9.48 71.98 0.68 -3.65 16 8 N -0.69 -21.96 4.37 -442.55 -1.93 -23.89 16 9 C 0.53 19.37 6.64 87.66 0.58 19.95 16 10 O -0.60 -28.05 15.33 -3.03 -0.05 -28.10 16 11 C 0.08 2.03 0.91 3.37 0.00 2.03 16 12 C -0.13 -3.24 5.99 31.72 0.19 -3.05 16 13 C -0.13 -2.36 7.07 31.97 0.23 -2.14 16 14 C 0.04 0.59 6.72 86.73 0.58 1.17 16 15 N -0.51 -10.01 4.79 -831.16 -3.98 -14.00 16 16 C 0.04 0.57 6.72 86.73 0.58 1.15 16 17 C -0.13 -2.53 7.07 31.96 0.23 -2.30 16 18 C -0.13 -3.35 6.03 31.72 0.19 -3.16 16 19 N -0.73 -37.14 4.49 -322.92 -1.45 -38.59 16 20 C -0.22 -12.63 9.93 84.03 0.83 -11.80 16 21 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 22 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 23 N -0.97 -62.31 13.06 21.65 0.28 -62.02 16 24 Si 0.96 48.55 29.55 68.60 2.03 50.58 16 25 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 26 H -0.30 -15.56 7.11 99.48 0.71 -14.85 16 27 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 28 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.41 10.87 8.05 -92.71 -0.75 10.12 16 37 H 0.06 1.92 6.85 -2.39 -0.02 1.90 16 38 H 0.09 1.89 7.30 -2.39 -0.02 1.87 16 39 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.06 1.26 8.14 -2.38 -0.02 1.25 16 41 H 0.07 0.84 7.08 -2.39 -0.02 0.82 16 42 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 44 H 0.07 0.83 7.08 -2.39 -0.02 0.81 16 45 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.04 1.49 7.84 -2.39 -0.02 1.48 16 48 H 0.10 2.06 7.30 -2.38 -0.02 2.04 16 49 H 0.37 20.60 7.80 -92.71 -0.72 19.87 16 50 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -75.94 388.16 -0.03 -75.97 By element: Atomic # 1 Polarization: 43.06 SS G_CDS: -0.55 Total: 42.51 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 5.62 Total: -2.46 kcal Atomic # 7 Polarization: -131.42 SS G_CDS: -7.08 Total: -138.50 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.05 Total: -28.10 kcal Atomic # 14 Polarization: 48.55 SS G_CDS: 2.03 Total: 50.58 kcal Total: -75.94 -0.03 -75.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134858940.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.389 kcal (2) G-P(sol) polarization free energy of solvation -75.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds