Wall clock time and date at job start Tue Mar 31 2020 09:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46730 * 2 1 4 4 C 1.52997 * 109.46967 * 240.00159 * 2 1 3 5 5 C 1.53002 * 109.46988 * 174.62307 * 4 2 1 6 6 H 1.09006 * 109.47232 * 54.65170 * 5 4 2 7 7 C 1.52999 * 109.47214 * 294.65419 * 5 4 2 8 8 N 1.46502 * 109.47529 * 174.65538 * 5 4 2 9 9 C 1.34771 * 120.00374 * 207.49666 * 8 5 4 10 10 O 1.21280 * 119.99883 * 5.17428 * 9 8 5 11 11 C 1.50699 * 120.00074 * 185.18392 * 9 8 5 12 12 C 1.54137 * 110.74485 * 206.21562 * 11 9 8 13 13 C 1.55155 * 102.88786 * 97.41626 * 12 11 9 14 14 C 1.54833 * 101.66170 * 36.15742 * 13 12 11 15 15 N 1.47857 * 110.77485 * 325.09524 * 11 9 8 16 16 C 1.49488 * 107.55767 * 121.28099 * 15 11 9 17 17 C 1.54840 * 105.11033 * 336.63605 * 16 15 11 18 18 C 1.54135 * 110.75048 * 84.77253 * 11 9 8 19 19 N 1.46495 * 109.47306 * 119.99825 * 2 1 3 20 20 C 1.36939 * 120.00106 * 277.81066 * 19 2 1 21 21 H 1.08002 * 119.99975 * 5.09241 * 20 19 2 22 22 C 1.38809 * 119.99956 * 185.08647 * 20 19 2 23 23 N 1.31614 * 120.00283 * 5.15922 * 22 20 19 24 24 Si 1.86806 * 120.00049 * 185.15682 * 22 20 19 25 25 H 1.48505 * 109.46868 * 59.99842 * 24 22 20 26 26 H 1.48492 * 109.47584 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.46925 * 300.00131 * 24 22 20 28 28 H 1.09003 * 109.47709 * 299.99895 * 1 2 3 29 29 H 1.08996 * 109.47453 * 60.00217 * 1 2 3 30 30 H 1.08998 * 109.47136 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47686 * 54.62741 * 4 2 1 32 32 H 1.09000 * 109.46946 * 294.62013 * 4 2 1 33 33 H 1.08997 * 109.47519 * 300.00332 * 7 5 4 34 34 H 1.09006 * 109.47088 * 59.99989 * 7 5 4 35 35 H 1.09003 * 109.47124 * 179.97438 * 7 5 4 36 36 H 0.97004 * 119.99532 * 27.48808 * 8 5 4 37 37 H 1.09000 * 110.73348 * 339.06605 * 12 11 9 38 38 H 1.08998 * 110.72985 * 215.76984 * 12 11 9 39 39 H 1.09007 * 110.98804 * 154.24957 * 13 12 11 40 40 H 1.08999 * 110.99274 * 278.05996 * 13 12 11 41 41 H 1.08994 * 110.32632 * 82.22794 * 14 13 12 42 42 H 1.09008 * 110.32509 * 204.43334 * 14 13 12 43 43 H 1.08995 * 109.97225 * 217.89458 * 16 15 11 44 44 H 1.08997 * 110.71180 * 95.75945 * 16 15 11 45 45 H 1.08998 * 110.99103 * 278.96266 * 17 16 15 46 46 H 1.08997 * 111.02093 * 155.16802 * 17 16 15 47 47 H 1.08997 * 110.72919 * 20.18346 * 18 11 9 48 48 H 1.08994 * 110.73192 * 143.48525 * 18 11 9 49 49 H 0.97000 * 120.00294 * 97.81105 * 19 2 1 50 50 H 0.97004 * 120.00148 * 185.00123 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 3.5639 -0.6052 -1.3187 6 1 3.9991 -0.9741 -0.3898 7 6 3.9553 0.8603 -1.5184 8 7 4.0637 -1.4015 -2.4422 9 6 5.3099 -1.9133 -2.4039 10 8 5.9834 -1.7951 -1.4023 11 6 5.8664 -2.6324 -3.6056 12 6 6.9404 -3.6536 -3.1819 13 6 6.1493 -4.9875 -3.1328 14 6 5.1695 -4.8141 -4.3191 15 7 4.8023 -3.3809 -4.3082 16 6 4.7416 -2.8685 -5.7112 17 6 5.3467 -1.4446 -5.6474 18 6 6.4804 -1.6320 -4.6047 19 7 2.0183 -0.6905 1.1961 20 6 2.0946 -0.0226 2.3892 21 1 1.7185 0.9867 2.4680 22 6 2.6553 -0.6429 3.4972 23 7 3.2049 -1.8328 3.3775 24 14 2.6297 0.2112 5.1584 25 1 1.2236 0.4654 5.5626 26 1 3.2875 -0.6541 6.1701 27 1 3.3584 1.5017 5.0626 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6002 -0.2660 -2.1366 32 1 1.7574 -1.7729 -1.2024 33 1 3.5202 1.2294 -2.4471 34 1 3.5835 1.4529 -0.6824 35 1 5.0411 0.9430 -1.5674 36 1 3.4976 -1.5605 -3.2137 37 1 7.3414 -3.4065 -2.1989 38 1 7.7378 -3.7050 -3.9232 39 1 6.8101 -5.8394 -3.2935 40 1 5.6090 -5.0866 -2.1914 41 1 5.6613 -5.0718 -5.2570 42 1 4.2841 -5.4328 -4.1724 43 1 3.7056 -2.8247 -6.0471 44 1 5.3288 -3.4998 -6.3780 45 1 4.6094 -0.7223 -5.2970 46 1 5.7514 -1.1481 -6.6150 47 1 6.7116 -0.6876 -4.1121 48 1 7.3703 -2.0518 -5.0735 49 1 2.2877 -1.6209 1.1431 50 1 3.5315 -2.2976 4.1638 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134858941.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:23:59 Heat of formation + Delta-G solvation = -28.529288 kcal Electronic energy + Delta-G solvation = -27382.294749 eV Core-core repulsion = 23830.033841 eV Total energy + Delta-G solvation = -3552.260908 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.93573 -38.48665 -36.73558 -34.55828 -34.03057 -32.14763 -31.44652 -30.25198 -28.51849 -28.20650 -26.22159 -25.67751 -23.71757 -22.93898 -21.76295 -20.92185 -20.66511 -19.64603 -18.91455 -17.42315 -17.02414 -16.27073 -15.60216 -15.21858 -14.87497 -14.59614 -14.33471 -14.10818 -13.80798 -13.69216 -13.44609 -13.29919 -12.95880 -12.68932 -12.43980 -12.20602 -12.01575 -11.83781 -11.77600 -11.66951 -11.65382 -11.31253 -11.24744 -11.12854 -11.01476 -10.85367 -10.72299 -10.58495 -10.54373 -10.25289 -10.18330 -9.90277 -9.54727 -9.51147 -8.76740 -8.70857 -8.54779 -6.84176 -5.63766 -2.94302 2.90984 3.51284 3.52651 3.55689 3.57010 3.70672 4.25884 4.29955 4.56324 4.69137 4.74708 4.79388 4.92539 5.04067 5.12115 5.26110 5.33328 5.36605 5.47708 5.49401 5.52323 5.58969 5.66424 5.68945 5.75070 5.77683 5.78608 5.85886 5.89439 5.94638 6.01356 6.13224 6.14772 6.16987 6.28248 6.43916 6.50545 6.51774 6.62048 6.64773 6.65487 6.86349 7.00420 7.05690 7.17247 7.79872 7.97852 8.53565 8.67188 9.63678 10.22138 10.56906 11.57217 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.017615 B = 0.003658 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.204990 B = 7652.147867 C = 8282.518633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.173 3.827 3 H 0.049 0.951 4 C -0.126 4.126 5 C 0.138 3.862 6 H 0.108 0.892 7 C -0.156 4.156 8 N -0.709 5.709 9 C 0.538 3.462 10 O -0.537 6.537 11 C 0.067 3.933 12 C -0.128 4.128 13 C -0.134 4.134 14 C 0.035 3.965 15 N -0.500 5.500 16 C 0.029 3.971 17 C -0.133 4.133 18 C -0.123 4.123 19 N -0.722 5.722 20 C -0.238 4.238 21 H 0.068 0.932 22 C -0.011 4.011 23 N -0.928 5.928 24 Si 0.901 3.099 25 H -0.288 1.288 26 H -0.292 1.292 27 H -0.286 1.286 28 H 0.052 0.948 29 H 0.035 0.965 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.399 0.601 37 H 0.096 0.904 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.052 0.948 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.054 0.946 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.078 0.922 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.061 -2.751 -23.182 23.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.063 3.937 3 H 0.067 0.933 4 C -0.164 4.164 5 C 0.034 3.966 6 H 0.126 0.874 7 C -0.214 4.214 8 N -0.359 5.359 9 C 0.322 3.678 10 O -0.413 6.413 11 C -0.026 4.026 12 C -0.166 4.166 13 C -0.172 4.172 14 C -0.093 4.093 15 N -0.225 5.225 16 C -0.099 4.099 17 C -0.171 4.171 18 C -0.162 4.162 19 N -0.364 5.364 20 C -0.369 4.369 21 H 0.086 0.914 22 C -0.207 4.207 23 N -0.576 5.576 24 Si 0.733 3.267 25 H -0.215 1.215 26 H -0.218 1.218 27 H -0.213 1.213 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.233 0.767 37 H 0.114 0.886 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.073 0.927 45 H 0.097 0.903 46 H 0.096 0.904 47 H 0.098 0.902 48 H 0.097 0.903 49 H 0.216 0.784 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.091 -2.432 -22.045 22.553 hybrid contribution 0.453 -0.127 0.164 0.499 sum 4.545 -2.559 -21.881 22.494 Atomic orbital electron populations 1.22429 0.99424 1.00745 0.99791 1.20238 0.91704 0.95622 0.86176 0.93268 1.22069 0.93872 1.01592 0.98905 1.21074 0.94300 0.90428 0.90788 0.87432 1.22151 1.01086 0.96677 1.01497 1.46000 1.14889 1.53021 1.21995 1.19866 0.82020 0.78297 0.87617 1.90746 1.59164 1.59149 1.32216 1.22460 0.91355 0.94933 0.93878 1.22840 0.96398 0.93464 1.03942 1.22797 0.97724 0.97392 0.99262 1.23280 0.98901 0.89213 0.97876 1.65950 1.41256 1.03076 1.12250 1.23614 1.01618 0.95188 0.89441 1.22798 0.97867 0.97176 0.99290 1.22811 0.98262 0.99533 0.95607 1.42434 1.77556 1.12129 1.04265 1.19156 1.31783 0.97996 0.87948 0.91418 1.24708 1.00423 0.97355 0.98246 1.69698 1.45024 1.14372 1.28487 0.86361 0.77324 0.78517 0.84547 1.21485 1.21812 1.21303 0.92870 0.94644 0.93601 0.92283 0.91683 0.93551 0.90775 0.93168 0.76684 0.88565 0.90879 0.90578 0.90223 0.92988 0.89773 0.89725 0.92731 0.90346 0.90393 0.90237 0.90292 0.78360 0.93606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.46 37.16 0.35 -2.60 16 2 C 0.17 3.42 2.76 -67.94 -0.19 3.23 16 3 H 0.05 0.99 6.30 -51.93 -0.33 0.66 16 4 C -0.13 -2.08 4.40 -26.73 -0.12 -2.20 16 5 C 0.14 2.43 2.68 -67.93 -0.18 2.25 16 6 H 0.11 2.49 6.90 -51.93 -0.36 2.13 16 7 C -0.16 -2.52 9.27 37.16 0.34 -2.18 16 8 N -0.71 -10.71 4.99 -53.80 -0.27 -10.97 16 9 C 0.54 8.81 6.65 -10.99 -0.07 8.73 16 10 O -0.54 -11.35 15.26 5.56 0.08 -11.27 16 11 C 0.07 0.81 0.91 -131.04 -0.12 0.69 16 12 C -0.13 -1.50 5.98 -25.00 -0.15 -1.65 16 13 C -0.13 -1.42 7.07 -24.62 -0.17 -1.60 16 14 C 0.04 0.33 6.75 -2.28 -0.02 0.31 16 15 N -0.50 -5.21 4.75 -212.75 -1.01 -6.22 16 16 C 0.03 0.22 6.75 -1.41 -0.01 0.22 16 17 C -0.13 -1.02 7.07 -24.62 -0.17 -1.19 16 18 C -0.12 -1.19 6.03 -24.99 -0.15 -1.34 16 19 N -0.72 -18.23 4.52 -53.43 -0.24 -18.47 16 20 C -0.24 -6.68 9.90 -15.06 -0.15 -6.83 16 21 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 22 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 23 N -0.93 -28.93 13.08 55.49 0.73 -28.21 16 24 Si 0.90 22.99 29.56 -169.99 -5.02 17.97 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 1.29 6.47 -51.93 -0.34 0.95 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.40 5.11 7.98 -40.82 -0.33 4.78 16 37 H 0.10 1.39 6.86 -51.93 -0.36 1.03 16 38 H 0.07 0.70 7.31 -51.93 -0.38 0.32 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 0.40 7.11 -51.93 -0.37 0.03 16 42 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.05 0.37 7.14 -51.93 -0.37 0.00 16 45 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.08 0.86 7.84 -51.93 -0.41 0.45 16 48 H 0.08 0.65 7.31 -51.93 -0.38 0.27 16 49 H 0.38 10.48 7.80 -40.82 -0.32 10.16 16 50 H 0.25 7.73 8.32 -40.82 -0.34 7.39 16 LS Contribution 385.68 15.07 5.81 5.81 Total: -1.00 -32.82 385.68 -9.80 -42.62 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: -8.97 Total: 13.33 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -0.90 Total: -4.59 kcal Atomic # 7 Polarization: -63.08 SS G_CDS: -0.80 Total: -63.87 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.08 Total: -11.27 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.82 -9.80 -42.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134858941.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.088 kcal (2) G-P(sol) polarization free energy of solvation -32.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds