Wall clock time and date at job start Tue Mar 31 2020 09:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46730 * 2 1 4 4 C 1.52997 * 109.46967 * 240.00159 * 2 1 3 5 5 C 1.53002 * 109.46988 * 174.62307 * 4 2 1 6 6 H 1.09006 * 109.47232 * 54.65170 * 5 4 2 7 7 C 1.52999 * 109.47214 * 294.65419 * 5 4 2 8 8 N 1.46502 * 109.47529 * 174.65538 * 5 4 2 9 9 C 1.34771 * 120.00374 * 207.49666 * 8 5 4 10 10 O 1.21280 * 119.99883 * 5.17428 * 9 8 5 11 11 C 1.50699 * 120.00074 * 185.18392 * 9 8 5 12 12 C 1.54137 * 110.74485 * 206.21562 * 11 9 8 13 13 C 1.55155 * 102.88786 * 97.41626 * 12 11 9 14 14 C 1.54833 * 101.66170 * 36.15742 * 13 12 11 15 15 N 1.47857 * 110.77485 * 325.09524 * 11 9 8 16 16 C 1.49488 * 107.55767 * 121.28099 * 15 11 9 17 17 C 1.54840 * 105.11033 * 336.63605 * 16 15 11 18 18 C 1.54135 * 110.75048 * 84.77253 * 11 9 8 19 19 N 1.46495 * 109.47306 * 119.99825 * 2 1 3 20 20 C 1.36939 * 120.00106 * 277.81066 * 19 2 1 21 21 H 1.08002 * 119.99975 * 5.09241 * 20 19 2 22 22 C 1.38809 * 119.99956 * 185.08647 * 20 19 2 23 23 N 1.31614 * 120.00283 * 5.15922 * 22 20 19 24 24 Si 1.86806 * 120.00049 * 185.15682 * 22 20 19 25 25 H 1.48505 * 109.46868 * 59.99842 * 24 22 20 26 26 H 1.48492 * 109.47584 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.46925 * 300.00131 * 24 22 20 28 28 H 1.09003 * 109.47709 * 299.99895 * 1 2 3 29 29 H 1.08996 * 109.47453 * 60.00217 * 1 2 3 30 30 H 1.08998 * 109.47136 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47686 * 54.62741 * 4 2 1 32 32 H 1.09000 * 109.46946 * 294.62013 * 4 2 1 33 33 H 1.08997 * 109.47519 * 300.00332 * 7 5 4 34 34 H 1.09006 * 109.47088 * 59.99989 * 7 5 4 35 35 H 1.09003 * 109.47124 * 179.97438 * 7 5 4 36 36 H 0.97004 * 119.99532 * 27.48808 * 8 5 4 37 37 H 1.09000 * 110.73348 * 339.06605 * 12 11 9 38 38 H 1.08998 * 110.72985 * 215.76984 * 12 11 9 39 39 H 1.09007 * 110.98804 * 154.24957 * 13 12 11 40 40 H 1.08999 * 110.99274 * 278.05996 * 13 12 11 41 41 H 1.08994 * 110.32632 * 82.22794 * 14 13 12 42 42 H 1.09008 * 110.32509 * 204.43334 * 14 13 12 43 43 H 1.08995 * 109.97225 * 217.89458 * 16 15 11 44 44 H 1.08997 * 110.71180 * 95.75945 * 16 15 11 45 45 H 1.08998 * 110.99103 * 278.96266 * 17 16 15 46 46 H 1.08997 * 111.02093 * 155.16802 * 17 16 15 47 47 H 1.08997 * 110.72919 * 20.18346 * 18 11 9 48 48 H 1.08994 * 110.73192 * 143.48525 * 18 11 9 49 49 H 0.97000 * 120.00294 * 97.81105 * 19 2 1 50 50 H 0.97004 * 120.00148 * 185.00123 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 3.5639 -0.6052 -1.3187 6 1 3.9991 -0.9741 -0.3898 7 6 3.9553 0.8603 -1.5184 8 7 4.0637 -1.4015 -2.4422 9 6 5.3099 -1.9133 -2.4039 10 8 5.9834 -1.7951 -1.4023 11 6 5.8664 -2.6324 -3.6056 12 6 6.9404 -3.6536 -3.1819 13 6 6.1493 -4.9875 -3.1328 14 6 5.1695 -4.8141 -4.3191 15 7 4.8023 -3.3809 -4.3082 16 6 4.7416 -2.8685 -5.7112 17 6 5.3467 -1.4446 -5.6474 18 6 6.4804 -1.6320 -4.6047 19 7 2.0183 -0.6905 1.1961 20 6 2.0946 -0.0226 2.3892 21 1 1.7185 0.9867 2.4680 22 6 2.6553 -0.6429 3.4972 23 7 3.2049 -1.8328 3.3775 24 14 2.6297 0.2112 5.1584 25 1 1.2236 0.4654 5.5626 26 1 3.2875 -0.6541 6.1701 27 1 3.3584 1.5017 5.0626 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6002 -0.2660 -2.1366 32 1 1.7574 -1.7729 -1.2024 33 1 3.5202 1.2294 -2.4471 34 1 3.5835 1.4529 -0.6824 35 1 5.0411 0.9430 -1.5674 36 1 3.4976 -1.5605 -3.2137 37 1 7.3414 -3.4065 -2.1989 38 1 7.7378 -3.7050 -3.9232 39 1 6.8101 -5.8394 -3.2935 40 1 5.6090 -5.0866 -2.1914 41 1 5.6613 -5.0718 -5.2570 42 1 4.2841 -5.4328 -4.1724 43 1 3.7056 -2.8247 -6.0471 44 1 5.3288 -3.4998 -6.3780 45 1 4.6094 -0.7223 -5.2970 46 1 5.7514 -1.1481 -6.6150 47 1 6.7116 -0.6876 -4.1121 48 1 7.3703 -2.0518 -5.0735 49 1 2.2877 -1.6209 1.1431 50 1 3.5315 -2.2976 4.1638 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134858941.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:23:58 Heat of formation + Delta-G solvation = -52.189793 kcal Electronic energy + Delta-G solvation = -27383.320746 eV Core-core repulsion = 23830.033841 eV Total energy + Delta-G solvation = -3553.286905 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.92756 -39.71031 -38.29758 -36.12093 -34.89947 -34.05844 -32.34654 -31.70891 -30.32331 -29.09960 -27.63487 -26.42116 -25.74102 -24.24837 -22.51255 -22.06473 -21.64678 -21.12660 -20.19493 -19.21456 -18.33354 -17.15956 -16.89438 -16.77546 -16.25753 -15.84781 -15.58076 -15.33960 -15.24187 -15.00618 -14.69518 -14.52873 -14.19112 -13.93312 -13.58431 -13.50803 -13.31506 -13.15121 -13.12204 -12.89235 -12.70507 -12.51444 -12.50229 -12.44002 -12.28577 -12.13177 -12.05184 -11.92749 -11.80017 -11.75141 -11.64242 -11.45758 -11.36036 -10.86556 -10.78379 -9.96819 -9.49996 -8.95363 -7.88753 -5.18142 1.45091 1.48559 1.54542 1.66996 2.29483 2.58516 2.88691 3.43062 3.46006 3.49619 3.73932 3.86382 3.99244 4.01419 4.03755 4.09906 4.19637 4.21973 4.37217 4.43768 4.52908 4.53492 4.62225 4.64843 4.71524 4.73811 4.85433 4.86429 4.88391 4.95968 4.99996 5.02416 5.06796 5.07779 5.12484 5.15176 5.20752 5.21675 5.25945 5.33314 5.48036 5.56988 5.62319 5.68106 5.74366 5.97279 6.32098 6.73069 7.36628 7.42181 8.16010 8.37335 9.33421 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.017615 B = 0.003658 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.204990 B = 7652.147867 C = 8282.518633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.164 3.836 3 H 0.049 0.951 4 C -0.111 4.111 5 C 0.143 3.857 6 H 0.043 0.957 7 C -0.146 4.146 8 N -0.695 5.695 9 C 0.529 3.471 10 O -0.597 6.597 11 C 0.072 3.928 12 C -0.130 4.130 13 C -0.135 4.135 14 C 0.040 3.960 15 N -0.516 5.516 16 C 0.031 3.969 17 C -0.126 4.126 18 C -0.122 4.122 19 N -0.734 5.734 20 C -0.231 4.231 21 H 0.076 0.924 22 C -0.079 4.079 23 N -0.971 5.971 24 Si 0.967 3.033 25 H -0.276 1.276 26 H -0.300 1.300 27 H -0.279 1.279 28 H 0.034 0.966 29 H 0.077 0.923 30 H 0.040 0.960 31 H 0.105 0.895 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.033 0.967 36 H 0.414 0.586 37 H 0.057 0.943 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.044 0.956 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.103 0.897 47 H 0.061 0.939 48 H 0.099 0.901 49 H 0.367 0.633 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.882 -1.955 -26.974 27.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.056 3.944 3 H 0.067 0.933 4 C -0.149 4.149 5 C 0.038 3.962 6 H 0.061 0.939 7 C -0.204 4.204 8 N -0.345 5.345 9 C 0.315 3.685 10 O -0.477 6.477 11 C -0.022 4.022 12 C -0.169 4.169 13 C -0.173 4.173 14 C -0.088 4.088 15 N -0.241 5.241 16 C -0.096 4.096 17 C -0.164 4.164 18 C -0.161 4.161 19 N -0.374 5.374 20 C -0.363 4.363 21 H 0.094 0.906 22 C -0.271 4.271 23 N -0.622 5.622 24 Si 0.796 3.204 25 H -0.202 1.202 26 H -0.227 1.227 27 H -0.205 1.205 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.123 0.877 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.078 0.922 35 H 0.052 0.948 36 H 0.252 0.748 37 H 0.076 0.924 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.062 0.938 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.115 0.885 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.121 0.879 47 H 0.080 0.920 48 H 0.117 0.883 49 H 0.198 0.802 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.846 -1.596 -25.910 26.115 hybrid contribution 0.801 -0.352 1.275 1.547 sum 3.648 -1.948 -24.635 24.979 Atomic orbital electron populations 1.22270 0.97245 1.00836 1.00983 1.20549 0.93054 0.95391 0.85453 0.93262 1.21944 0.92809 1.01115 0.99064 1.20763 0.94848 0.91387 0.89168 0.93855 1.22043 1.00243 0.95339 1.02782 1.45827 1.14841 1.52256 1.21575 1.20808 0.81704 0.77695 0.88303 1.90718 1.60684 1.61373 1.34975 1.22323 0.91641 0.95464 0.92737 1.22862 0.97265 0.94088 1.02700 1.22790 0.98196 0.97735 0.98535 1.23304 0.98706 0.88611 0.98139 1.65861 1.40538 1.03520 1.14198 1.23718 1.02810 0.95243 0.87832 1.22809 0.96788 0.97158 0.99611 1.22837 0.99817 0.97984 0.95428 1.42657 1.77777 1.11569 1.05441 1.19586 1.29652 0.98138 0.88972 0.90599 1.25525 1.01312 0.98268 1.01998 1.69885 1.47234 1.16274 1.28795 0.85308 0.77675 0.77346 0.80070 1.20190 1.22664 1.20548 0.94657 0.90423 0.94059 0.87672 0.92512 0.89627 0.92243 0.94758 0.74848 0.92437 0.87972 0.88346 0.93752 0.90165 0.89630 0.88479 0.90820 0.90833 0.87854 0.92032 0.88287 0.80206 0.94493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.22 9.46 71.98 0.68 -4.54 16 2 C 0.16 6.38 2.76 44.99 0.12 6.50 16 3 H 0.05 1.94 6.30 -2.39 -0.02 1.92 16 4 C -0.11 -3.54 4.40 30.59 0.13 -3.40 16 5 C 0.14 5.16 2.68 44.99 0.12 5.28 16 6 H 0.04 2.16 6.90 -2.38 -0.02 2.14 16 7 C -0.15 -4.69 9.27 71.98 0.67 -4.02 16 8 N -0.69 -21.07 4.99 -442.53 -2.21 -23.29 16 9 C 0.53 18.09 6.65 87.66 0.58 18.68 16 10 O -0.60 -27.57 15.26 -3.03 -0.05 -27.62 16 11 C 0.07 1.69 0.91 3.37 0.00 1.69 16 12 C -0.13 -3.09 5.98 31.72 0.19 -2.90 16 13 C -0.13 -2.84 7.07 31.96 0.23 -2.61 16 14 C 0.04 0.65 6.75 86.73 0.59 1.24 16 15 N -0.52 -9.62 4.75 -827.01 -3.93 -13.55 16 16 C 0.03 0.35 6.75 86.43 0.58 0.93 16 17 C -0.13 -1.46 7.07 31.96 0.23 -1.23 16 18 C -0.12 -2.12 6.03 31.72 0.19 -1.93 16 19 N -0.73 -38.24 4.52 -322.96 -1.46 -39.70 16 20 C -0.23 -13.30 9.90 84.03 0.83 -12.47 16 21 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 22 C -0.08 -4.78 5.50 84.86 0.47 -4.32 16 23 N -0.97 -63.48 13.08 21.65 0.28 -63.20 16 24 Si 0.97 48.55 29.56 68.60 2.03 50.57 16 25 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 26 H -0.30 -15.33 7.11 99.48 0.71 -14.62 16 27 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 28 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.06 2.07 6.47 -2.38 -0.02 2.06 16 35 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.41 9.91 7.98 -92.71 -0.74 9.17 16 37 H 0.06 1.82 6.86 -2.39 -0.02 1.80 16 38 H 0.10 1.78 7.31 -2.39 -0.02 1.76 16 39 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 40 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.08 0.90 7.11 -2.39 -0.02 0.88 16 42 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 43 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.07 0.61 7.14 -2.39 -0.02 0.59 16 45 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.06 1.30 7.84 -2.39 -0.02 1.28 16 48 H 0.10 1.33 7.31 -2.39 -0.02 1.32 16 49 H 0.37 21.18 7.80 -92.71 -0.72 20.46 16 50 H 0.25 15.76 8.32 -92.71 -0.77 14.99 16 Total: -1.00 -78.15 385.68 -0.26 -78.41 By element: Atomic # 1 Polarization: 42.00 SS G_CDS: -0.54 Total: 41.46 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 5.61 Total: -3.11 kcal Atomic # 7 Polarization: -132.41 SS G_CDS: -7.32 Total: -139.73 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.05 Total: -27.62 kcal Atomic # 14 Polarization: 48.55 SS G_CDS: 2.03 Total: 50.57 kcal Total: -78.15 -0.26 -78.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134858941.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.225 kcal (2) G-P(sol) polarization free energy of solvation -78.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds