Wall clock time and date at job start Tue Mar 31 2020 09:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47395 * 2 1 4 4 C 1.53001 * 109.46748 * 240.00008 * 2 1 3 5 5 C 1.52998 * 109.47061 * 65.82281 * 4 2 1 6 6 H 1.09005 * 109.47071 * 302.76866 * 5 4 2 7 7 C 1.53000 * 109.47026 * 182.77506 * 5 4 2 8 8 N 1.46499 * 109.47588 * 62.77102 * 5 4 2 9 9 C 1.36941 * 120.00012 * 201.73075 * 8 5 4 10 10 H 1.08002 * 119.99611 * 5.09810 * 9 8 5 11 11 C 1.38810 * 119.99961 * 185.10327 * 9 8 5 12 12 N 1.31620 * 120.00107 * 5.11670 * 11 9 8 13 13 Si 1.86797 * 119.99878 * 185.12364 * 11 9 8 14 14 H 1.48496 * 109.47504 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47065 * 119.99820 * 13 11 9 16 16 H 1.48505 * 109.46820 * 239.99294 * 13 11 9 17 17 N 1.46497 * 109.47274 * 120.00371 * 2 1 3 18 18 C 1.34778 * 120.00097 * 277.86626 * 17 2 1 19 19 O 1.21285 * 119.99793 * 4.82918 * 18 17 2 20 20 C 1.50699 * 120.00327 * 184.82791 * 18 17 2 21 21 C 1.54131 * 110.74459 * 324.66651 * 20 18 17 22 22 C 1.57058 * 102.00975 * 97.57831 * 21 20 18 23 23 C 1.54840 * 101.73139 * 36.30606 * 22 21 20 24 24 N 1.47853 * 110.77532 * 84.33493 * 20 18 17 25 25 C 1.47954 * 108.37867 * 120.33064 * 24 20 18 26 26 C 1.54839 * 105.06015 * 337.18418 * 25 24 20 27 27 C 1.54139 * 110.74509 * 203.22166 * 20 18 17 28 28 H 1.09009 * 109.46469 * 299.99957 * 1 2 3 29 29 H 1.08995 * 109.47248 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46883 * 59.99527 * 1 2 3 31 31 H 1.09005 * 109.46733 * 185.81781 * 4 2 1 32 32 H 1.08998 * 109.47590 * 305.81744 * 4 2 1 33 33 H 1.08994 * 109.47639 * 59.99296 * 7 5 4 34 34 H 1.09008 * 109.47270 * 179.97438 * 7 5 4 35 35 H 1.08998 * 109.46939 * 299.99350 * 7 5 4 36 36 H 0.96994 * 119.99640 * 21.72651 * 8 5 4 37 37 H 0.96995 * 120.00450 * 185.00655 * 12 11 9 38 38 H 0.97000 * 120.00432 * 97.86479 * 17 2 1 39 39 H 1.09005 * 110.73044 * 215.76844 * 21 20 18 40 40 H 1.09003 * 110.73243 * 339.06420 * 21 20 18 41 41 H 1.09003 * 111.10280 * 278.13052 * 22 21 20 42 42 H 1.09000 * 110.81389 * 154.36287 * 22 21 20 43 43 H 1.08993 * 110.32459 * 204.26677 * 23 22 21 44 44 H 1.09002 * 110.31952 * 82.05537 * 23 22 21 45 45 H 1.09000 * 110.32960 * 218.29022 * 25 24 20 46 46 H 1.08996 * 110.40624 * 96.12050 * 25 24 20 47 47 H 1.09000 * 110.99152 * 278.57685 * 26 25 24 48 48 H 1.08999 * 110.98797 * 154.76352 * 26 25 24 49 49 H 1.08999 * 110.73242 * 20.91998 * 27 20 18 50 50 H 1.09001 * 110.72666 * 144.22373 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6528 0.0795 -2.4942 6 1 0.5713 0.2129 -2.5187 7 6 2.1019 -0.6760 -3.7465 8 7 2.3057 1.3904 -2.4542 9 6 1.7959 2.4317 -3.1829 10 1 0.8675 2.3105 -3.7213 11 6 2.4724 3.6429 -3.2296 12 7 3.6521 3.7603 -2.6579 13 14 1.7083 5.1063 -4.1037 14 1 0.3877 4.7166 -4.6598 15 1 1.5303 6.2214 -3.1392 16 1 2.6000 5.5443 -5.2076 17 7 2.0183 -0.6907 1.1961 18 6 2.0924 -0.0337 2.3706 19 8 1.6734 1.1011 2.4581 20 6 2.6957 -0.7092 3.5751 21 6 2.3605 -2.2136 3.5824 22 6 3.6597 -2.8409 2.9617 23 6 4.7625 -1.9266 3.5494 24 7 4.1678 -0.5719 3.5708 25 6 4.5736 0.1395 4.8030 26 6 3.3154 0.9254 5.2466 27 6 2.1801 -0.0656 4.8773 28 1 -0.3632 0.5139 0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 -0.8899 31 1 3.1250 -0.8124 -1.1987 32 1 1.5940 -1.7144 -1.3029 33 1 1.6163 -1.6513 -3.7763 34 1 1.8258 -0.1057 -4.6335 35 1 3.1835 -0.8093 -3.7221 36 1 3.0990 1.5207 -1.9116 37 1 4.0924 4.6241 -2.6271 38 1 2.2884 -1.6208 1.1428 39 1 2.2031 -2.5689 4.6008 40 1 1.4875 -2.4174 2.9623 41 1 3.6427 -2.7819 1.8734 42 1 3.7889 -3.8711 3.2934 43 1 5.6465 -1.9419 2.9120 44 1 5.0182 -2.2437 4.5604 45 1 5.3935 0.8258 4.5915 46 1 4.8664 -0.5729 5.5743 47 1 3.2188 1.8559 4.6871 48 1 3.3328 1.1169 6.3195 49 1 1.2454 0.4667 4.7009 50 1 2.0559 -0.8177 5.6565 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134858942.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:01 Heat of formation + Delta-G solvation = -26.122538 kcal Electronic energy + Delta-G solvation = -27377.512040 eV Core-core repulsion = 23825.355496 eV Total energy + Delta-G solvation = -3552.156544 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.00100 -38.52167 -36.76116 -34.78828 -33.81930 -32.22470 -31.63489 -30.07274 -28.52770 -28.26225 -26.24134 -25.65207 -23.72590 -22.95430 -21.89223 -20.96325 -20.74890 -19.70503 -18.93203 -17.45275 -17.08424 -16.32581 -15.51304 -15.24162 -14.88931 -14.53959 -14.50779 -14.13034 -13.82626 -13.64333 -13.48874 -13.31253 -12.92077 -12.67433 -12.52561 -12.30088 -12.01554 -11.84352 -11.81134 -11.66958 -11.62426 -11.32995 -11.20809 -11.13912 -11.01841 -10.88732 -10.81584 -10.60176 -10.52375 -10.32934 -10.16050 -9.89791 -9.55406 -9.52327 -8.80038 -8.67488 -8.54880 -6.86371 -5.65695 -2.95949 2.76131 3.42591 3.50441 3.55752 3.58117 3.99405 4.14298 4.25747 4.52685 4.68193 4.75139 4.77984 4.89941 4.97407 5.10270 5.23829 5.28551 5.37125 5.42041 5.44963 5.50790 5.58040 5.63925 5.68363 5.72192 5.73883 5.79553 5.82870 5.85034 5.91991 5.97492 6.10874 6.13630 6.18484 6.26947 6.38916 6.50192 6.59702 6.62126 6.64826 6.76568 6.81350 6.95215 6.98979 7.16133 7.79516 7.84599 8.51971 8.57489 9.62276 10.20089 10.54762 11.55712 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.016030 B = 0.003755 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.282514 B = 7454.425869 C = 8161.970553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.144 3.856 3 H 0.103 0.897 4 C -0.127 4.127 5 C 0.174 3.826 6 H 0.049 0.951 7 C -0.163 4.163 8 N -0.722 5.722 9 C -0.235 4.235 10 H 0.069 0.931 11 C -0.012 4.012 12 N -0.929 5.929 13 Si 0.901 3.099 14 H -0.281 1.281 15 H -0.292 1.292 16 H -0.293 1.293 17 N -0.720 5.720 18 C 0.542 3.458 19 O -0.530 6.530 20 C 0.070 3.930 21 C -0.139 4.139 22 C -0.134 4.134 23 C 0.035 3.965 24 N -0.496 5.496 25 C 0.037 3.963 26 C -0.130 4.130 27 C -0.122 4.122 28 H 0.054 0.946 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.033 0.967 34 H 0.053 0.947 35 H 0.045 0.955 36 H 0.383 0.617 37 H 0.253 0.747 38 H 0.391 0.609 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.052 0.948 45 H 0.084 0.916 46 H 0.050 0.950 47 H 0.084 0.916 48 H 0.073 0.927 49 H 0.086 0.914 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.793 -17.121 16.289 23.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.040 3.960 3 H 0.121 0.879 4 C -0.166 4.166 5 C 0.064 3.936 6 H 0.067 0.933 7 C -0.224 4.224 8 N -0.364 5.364 9 C -0.366 4.366 10 H 0.087 0.913 11 C -0.208 4.208 12 N -0.578 5.578 13 Si 0.732 3.268 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.221 1.221 17 N -0.372 5.372 18 C 0.326 3.674 19 O -0.405 6.405 20 C -0.023 4.023 21 C -0.177 4.177 22 C -0.173 4.173 23 C -0.092 4.092 24 N -0.221 5.221 25 C -0.091 4.091 26 C -0.168 4.168 27 C -0.161 4.161 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.217 0.783 37 H 0.063 0.937 38 H 0.225 0.775 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.070 0.930 45 H 0.102 0.898 46 H 0.068 0.932 47 H 0.103 0.897 48 H 0.092 0.908 49 H 0.105 0.895 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.965 -15.869 15.694 22.340 hybrid contribution -0.089 -0.024 0.293 0.307 sum -1.054 -15.893 15.987 22.567 Atomic orbital electron populations 1.22144 0.95795 1.00765 1.02839 1.21044 0.93809 0.98661 0.82479 0.87943 1.22084 1.01216 0.98461 0.94846 1.20224 0.96457 0.86312 0.90623 0.93348 1.22426 1.00683 0.98345 1.00912 1.42464 1.33419 1.05044 1.55491 1.19254 1.03369 0.91264 1.22718 0.91269 1.24705 0.96308 0.98403 1.01396 1.69704 1.14549 1.23474 1.50050 0.86213 0.78194 0.83498 0.78874 1.20625 1.21924 1.22055 1.46217 1.66653 1.15131 1.09156 1.19897 0.77864 0.86031 0.83640 1.90705 1.47604 1.18073 1.84087 1.22412 0.89831 0.95275 0.94742 1.23370 0.98765 0.93281 1.02329 1.23170 0.93827 0.99139 1.01115 1.23292 0.98204 0.87441 1.00290 1.65034 1.03765 1.16202 1.37147 1.23276 0.98636 0.97376 0.89767 1.22755 0.93388 0.99523 1.01085 1.22749 1.00409 0.98542 0.94356 0.92679 0.93623 0.90824 0.91636 0.92170 0.94754 0.92751 0.93553 0.78316 0.93682 0.77460 0.90161 0.90023 0.90350 0.90251 0.89610 0.92970 0.89775 0.93158 0.89707 0.90811 0.89526 0.90978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 9.19 37.16 0.34 -2.18 16 2 C 0.14 2.46 2.52 -67.93 -0.17 2.29 16 3 H 0.10 2.29 7.00 -51.93 -0.36 1.92 16 4 C -0.13 -2.04 4.38 -26.73 -0.12 -2.16 16 5 C 0.17 3.41 2.74 -67.93 -0.19 3.22 16 6 H 0.05 0.96 6.43 -51.93 -0.33 0.63 16 7 C -0.16 -2.97 9.45 37.16 0.35 -2.62 16 8 N -0.72 -18.12 4.45 -53.42 -0.24 -18.36 16 9 C -0.23 -6.58 9.89 -15.06 -0.15 -6.73 16 10 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 11 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 12 N -0.93 -28.91 13.08 55.49 0.73 -28.18 16 13 Si 0.90 23.02 29.56 -169.99 -5.02 17.99 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 16 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 17 N -0.72 -10.43 4.82 -53.81 -0.26 -10.69 16 18 C 0.54 8.67 6.81 -10.99 -0.07 8.59 16 19 O -0.53 -10.82 15.30 5.55 0.08 -10.73 16 20 C 0.07 0.84 0.93 -131.04 -0.12 0.72 16 21 C -0.14 -1.19 5.62 -23.94 -0.13 -1.33 16 22 C -0.13 -1.03 6.85 -23.56 -0.16 -1.19 16 23 C 0.04 0.32 6.75 -2.27 -0.02 0.30 16 24 N -0.50 -5.98 5.37 -214.08 -1.15 -7.13 16 25 C 0.04 0.39 6.74 -2.27 -0.02 0.38 16 26 C -0.13 -1.43 7.07 -24.62 -0.17 -1.60 16 27 C -0.12 -1.36 5.73 -24.99 -0.14 -1.50 16 28 H 0.05 0.94 7.80 -51.92 -0.41 0.54 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 1.26 6.53 -51.93 -0.34 0.92 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 1.07 8.14 -51.92 -0.42 0.65 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.38 10.43 7.65 -40.82 -0.31 10.12 16 37 H 0.25 7.66 8.32 -40.82 -0.34 7.32 16 38 H 0.39 4.53 5.66 -40.82 -0.23 4.30 16 39 H 0.08 0.58 7.32 -51.93 -0.38 0.20 16 40 H 0.08 0.68 7.27 -51.93 -0.38 0.31 16 41 H 0.08 0.63 6.71 -51.93 -0.35 0.28 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.05 0.40 7.13 -51.93 -0.37 0.03 16 45 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.05 0.43 7.14 -51.93 -0.37 0.06 16 47 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 48 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.09 1.11 7.30 -51.93 -0.38 0.73 16 50 H 0.07 0.63 7.32 -51.93 -0.38 0.25 16 LS Contribution 381.06 15.07 5.74 5.74 Total: -1.00 -33.36 381.06 -9.77 -43.14 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -8.79 Total: 12.49 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -0.87 Total: -4.27 kcal Atomic # 7 Polarization: -63.43 SS G_CDS: -0.92 Total: -64.36 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.08 Total: -10.73 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.36 -9.77 -43.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134858942.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.013 kcal (2) G-P(sol) polarization free energy of solvation -33.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds