Wall clock time and date at job start Tue Mar 31 2020 09:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47395 * 2 1 4 4 C 1.53001 * 109.46748 * 240.00008 * 2 1 3 5 5 C 1.52998 * 109.47061 * 65.82281 * 4 2 1 6 6 H 1.09005 * 109.47071 * 302.76866 * 5 4 2 7 7 C 1.53000 * 109.47026 * 182.77506 * 5 4 2 8 8 N 1.46499 * 109.47588 * 62.77102 * 5 4 2 9 9 C 1.36941 * 120.00012 * 201.73075 * 8 5 4 10 10 H 1.08002 * 119.99611 * 5.09810 * 9 8 5 11 11 C 1.38810 * 119.99961 * 185.10327 * 9 8 5 12 12 N 1.31620 * 120.00107 * 5.11670 * 11 9 8 13 13 Si 1.86797 * 119.99878 * 185.12364 * 11 9 8 14 14 H 1.48496 * 109.47504 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47065 * 119.99820 * 13 11 9 16 16 H 1.48505 * 109.46820 * 239.99294 * 13 11 9 17 17 N 1.46497 * 109.47274 * 120.00371 * 2 1 3 18 18 C 1.34778 * 120.00097 * 277.86626 * 17 2 1 19 19 O 1.21285 * 119.99793 * 4.82918 * 18 17 2 20 20 C 1.50699 * 120.00327 * 184.82791 * 18 17 2 21 21 C 1.54131 * 110.74459 * 324.66651 * 20 18 17 22 22 C 1.57058 * 102.00975 * 97.57831 * 21 20 18 23 23 C 1.54840 * 101.73139 * 36.30606 * 22 21 20 24 24 N 1.47853 * 110.77532 * 84.33493 * 20 18 17 25 25 C 1.47954 * 108.37867 * 120.33064 * 24 20 18 26 26 C 1.54839 * 105.06015 * 337.18418 * 25 24 20 27 27 C 1.54139 * 110.74509 * 203.22166 * 20 18 17 28 28 H 1.09009 * 109.46469 * 299.99957 * 1 2 3 29 29 H 1.08995 * 109.47248 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46883 * 59.99527 * 1 2 3 31 31 H 1.09005 * 109.46733 * 185.81781 * 4 2 1 32 32 H 1.08998 * 109.47590 * 305.81744 * 4 2 1 33 33 H 1.08994 * 109.47639 * 59.99296 * 7 5 4 34 34 H 1.09008 * 109.47270 * 179.97438 * 7 5 4 35 35 H 1.08998 * 109.46939 * 299.99350 * 7 5 4 36 36 H 0.96994 * 119.99640 * 21.72651 * 8 5 4 37 37 H 0.96995 * 120.00450 * 185.00655 * 12 11 9 38 38 H 0.97000 * 120.00432 * 97.86479 * 17 2 1 39 39 H 1.09005 * 110.73044 * 215.76844 * 21 20 18 40 40 H 1.09003 * 110.73243 * 339.06420 * 21 20 18 41 41 H 1.09003 * 111.10280 * 278.13052 * 22 21 20 42 42 H 1.09000 * 110.81389 * 154.36287 * 22 21 20 43 43 H 1.08993 * 110.32459 * 204.26677 * 23 22 21 44 44 H 1.09002 * 110.31952 * 82.05537 * 23 22 21 45 45 H 1.09000 * 110.32960 * 218.29022 * 25 24 20 46 46 H 1.08996 * 110.40624 * 96.12050 * 25 24 20 47 47 H 1.09000 * 110.99152 * 278.57685 * 26 25 24 48 48 H 1.08999 * 110.98797 * 154.76352 * 26 25 24 49 49 H 1.08999 * 110.73242 * 20.91998 * 27 20 18 50 50 H 1.09001 * 110.72666 * 144.22373 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6528 0.0795 -2.4942 6 1 0.5713 0.2129 -2.5187 7 6 2.1019 -0.6760 -3.7465 8 7 2.3057 1.3904 -2.4542 9 6 1.7959 2.4317 -3.1829 10 1 0.8675 2.3105 -3.7213 11 6 2.4724 3.6429 -3.2296 12 7 3.6521 3.7603 -2.6579 13 14 1.7083 5.1063 -4.1037 14 1 0.3877 4.7166 -4.6598 15 1 1.5303 6.2214 -3.1392 16 1 2.6000 5.5443 -5.2076 17 7 2.0183 -0.6907 1.1961 18 6 2.0924 -0.0337 2.3706 19 8 1.6734 1.1011 2.4581 20 6 2.6957 -0.7092 3.5751 21 6 2.3605 -2.2136 3.5824 22 6 3.6597 -2.8409 2.9617 23 6 4.7625 -1.9266 3.5494 24 7 4.1678 -0.5719 3.5708 25 6 4.5736 0.1395 4.8030 26 6 3.3154 0.9254 5.2466 27 6 2.1801 -0.0656 4.8773 28 1 -0.3632 0.5139 0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 -0.8899 31 1 3.1250 -0.8124 -1.1987 32 1 1.5940 -1.7144 -1.3029 33 1 1.6163 -1.6513 -3.7763 34 1 1.8258 -0.1057 -4.6335 35 1 3.1835 -0.8093 -3.7221 36 1 3.0990 1.5207 -1.9116 37 1 4.0924 4.6241 -2.6271 38 1 2.2884 -1.6208 1.1428 39 1 2.2031 -2.5689 4.6008 40 1 1.4875 -2.4174 2.9623 41 1 3.6427 -2.7819 1.8734 42 1 3.7889 -3.8711 3.2934 43 1 5.6465 -1.9419 2.9120 44 1 5.0182 -2.2437 4.5604 45 1 5.3935 0.8258 4.5915 46 1 4.8664 -0.5729 5.5743 47 1 3.2188 1.8559 4.6871 48 1 3.3328 1.1169 6.3195 49 1 1.2454 0.4667 4.7009 50 1 2.0559 -0.8177 5.6565 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134858942.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:01 Heat of formation + Delta-G solvation = -50.503000 kcal Electronic energy + Delta-G solvation = -27378.569256 eV Core-core repulsion = 23825.355496 eV Total energy + Delta-G solvation = -3553.213760 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.97783 -39.71670 -38.28563 -36.22206 -34.86539 -33.99537 -32.66932 -31.43919 -30.31820 -29.14436 -27.63317 -26.40240 -25.74887 -24.21520 -22.70861 -22.10731 -21.67954 -21.15209 -20.17569 -19.23014 -18.36259 -17.33907 -16.76460 -16.61667 -16.29994 -15.91373 -15.62471 -15.36126 -15.30345 -14.99056 -14.78500 -14.36345 -14.20703 -13.89253 -13.56599 -13.54241 -13.38532 -13.17642 -13.07099 -12.86649 -12.83883 -12.53422 -12.49332 -12.40010 -12.21570 -12.10903 -12.04830 -11.93844 -11.87774 -11.75158 -11.58096 -11.49368 -11.34752 -10.90951 -10.76926 -10.00692 -9.40774 -8.96762 -7.90308 -5.18874 1.44659 1.46189 1.55439 1.58744 2.25170 2.57729 3.11597 3.36779 3.42342 3.49151 3.75801 3.83583 3.95480 3.98654 4.02096 4.09421 4.18119 4.22533 4.33434 4.42402 4.52478 4.53584 4.60245 4.61787 4.71830 4.74323 4.83136 4.86084 4.86924 4.95132 4.99272 5.01304 5.02707 5.07720 5.11226 5.12385 5.21844 5.23370 5.26831 5.32308 5.48388 5.55361 5.61275 5.66730 5.82787 6.03451 6.31723 6.66826 7.36031 7.37517 8.15066 8.35956 9.32435 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.016030 B = 0.003755 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.282514 B = 7454.425869 C = 8161.970553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.149 3.851 3 H 0.041 0.959 4 C -0.112 4.112 5 C 0.165 3.835 6 H 0.050 0.950 7 C -0.154 4.154 8 N -0.734 5.734 9 C -0.227 4.227 10 H 0.076 0.924 11 C -0.080 4.080 12 N -0.971 5.971 13 Si 0.964 3.036 14 H -0.263 1.263 15 H -0.300 1.300 16 H -0.294 1.294 17 N -0.706 5.706 18 C 0.531 3.469 19 O -0.587 6.587 20 C 0.071 3.929 21 C -0.131 4.131 22 C -0.128 4.128 23 C 0.033 3.967 24 N -0.530 5.530 25 C 0.040 3.960 26 C -0.131 4.131 27 C -0.120 4.120 28 H 0.035 0.965 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.032 0.968 35 H 0.038 0.962 36 H 0.367 0.633 37 H 0.246 0.754 38 H 0.409 0.591 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.109 0.891 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.081 0.919 47 H 0.042 0.958 48 H 0.099 0.901 49 H 0.060 0.940 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.547 -21.016 17.071 27.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.044 3.956 3 H 0.059 0.941 4 C -0.151 4.151 5 C 0.056 3.944 6 H 0.068 0.932 7 C -0.214 4.214 8 N -0.374 5.374 9 C -0.359 4.359 10 H 0.094 0.906 11 C -0.271 4.271 12 N -0.623 5.623 13 Si 0.793 3.207 14 H -0.187 1.187 15 H -0.227 1.227 16 H -0.222 1.222 17 N -0.358 5.358 18 C 0.317 3.683 19 O -0.466 6.466 20 C -0.021 4.021 21 C -0.170 4.170 22 C -0.166 4.166 23 C -0.094 4.094 24 N -0.256 5.256 25 C -0.088 4.088 26 C -0.169 4.169 27 C -0.159 4.159 28 H 0.054 0.946 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.125 0.875 33 H 0.096 0.904 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.199 0.801 37 H 0.055 0.945 38 H 0.247 0.753 39 H 0.123 0.877 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.127 0.873 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.099 0.901 47 H 0.061 0.939 48 H 0.118 0.882 49 H 0.079 0.921 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.745 -19.855 16.453 25.845 hybrid contribution 0.125 1.145 0.062 1.154 sum -1.620 -18.709 16.515 25.008 Atomic orbital electron populations 1.22040 0.94769 1.02613 1.01163 1.20722 0.94528 0.96060 0.84248 0.94110 1.21956 1.01176 0.99703 0.92237 1.20538 0.96082 0.84571 0.93171 0.93178 1.22274 1.00591 0.99887 0.98621 1.42680 1.33077 1.06907 1.54755 1.19656 1.02949 0.92016 1.21254 0.90583 1.25490 0.97083 1.01295 1.03279 1.69866 1.16254 1.23502 1.52670 0.85204 0.78045 0.79966 0.77436 1.18734 1.22745 1.22176 1.46036 1.65956 1.15762 1.08041 1.20873 0.76929 0.85524 0.85015 1.90677 1.49988 1.20759 1.85142 1.22345 0.89820 0.97407 0.92566 1.23392 0.99308 0.90190 1.04091 1.23187 0.92455 1.00291 1.00675 1.23377 0.98299 0.86122 1.01602 1.64876 1.03861 1.18488 1.38370 1.23274 0.97693 0.97668 0.90134 1.22732 0.94207 0.97942 1.02036 1.22786 0.98948 0.99086 0.95059 0.94626 0.89824 0.92253 0.92131 0.87461 0.90387 0.94866 0.94233 0.80125 0.94472 0.75311 0.87711 0.89667 0.90974 0.87273 0.90197 0.90834 0.91055 0.90061 0.93931 0.88226 0.92109 0.87421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.68 9.19 71.98 0.66 -4.02 16 2 C 0.15 5.16 2.52 44.99 0.11 5.28 16 3 H 0.04 1.94 7.00 -2.38 -0.02 1.93 16 4 C -0.11 -3.42 4.38 30.59 0.13 -3.28 16 5 C 0.16 6.30 2.74 44.99 0.12 6.42 16 6 H 0.05 1.92 6.43 -2.38 -0.02 1.91 16 7 C -0.15 -5.27 9.45 71.98 0.68 -4.59 16 8 N -0.73 -37.81 4.45 -322.94 -1.44 -39.25 16 9 C -0.23 -12.96 9.89 84.03 0.83 -12.13 16 10 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 11 C -0.08 -4.80 5.50 84.86 0.47 -4.34 16 12 N -0.97 -63.00 13.08 21.65 0.28 -62.72 16 13 Si 0.96 48.59 29.56 68.60 2.03 50.62 16 14 H -0.26 -12.32 7.11 99.48 0.71 -11.62 16 15 H -0.30 -15.36 7.11 99.48 0.71 -14.65 16 16 H -0.29 -14.77 7.11 99.48 0.71 -14.06 16 17 N -0.71 -20.14 4.82 -442.53 -2.13 -22.28 16 18 C 0.53 17.43 6.81 87.66 0.60 18.03 16 19 O -0.59 -25.82 15.30 -3.05 -0.05 -25.86 16 20 C 0.07 1.64 0.93 3.37 0.00 1.64 16 21 C -0.13 -1.79 5.62 32.40 0.18 -1.61 16 22 C -0.13 -1.46 6.85 32.65 0.22 -1.24 16 23 C 0.03 0.50 6.75 86.73 0.59 1.08 16 24 N -0.53 -12.26 5.37 -831.20 -4.46 -16.72 16 25 C 0.04 0.80 6.74 86.73 0.58 1.38 16 26 C -0.13 -2.92 7.07 31.96 0.23 -2.70 16 27 C -0.12 -2.58 5.73 31.72 0.18 -2.40 16 28 H 0.03 1.25 7.80 -2.38 -0.02 1.23 16 29 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.06 2.03 6.53 -2.39 -0.02 2.01 16 31 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 32 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.03 1.25 8.14 -2.38 -0.02 1.24 16 35 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.37 20.99 7.65 -92.71 -0.71 20.28 16 37 H 0.25 15.60 8.32 -92.71 -0.77 14.83 16 38 H 0.41 8.58 5.66 -92.71 -0.53 8.06 16 39 H 0.10 0.98 7.32 -2.38 -0.02 0.96 16 40 H 0.08 1.12 7.27 -2.39 -0.02 1.10 16 41 H 0.07 0.91 6.71 -2.39 -0.02 0.90 16 42 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.07 0.81 7.13 -2.39 -0.02 0.79 16 45 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.08 1.13 7.14 -2.39 -0.02 1.11 16 47 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.06 1.62 7.30 -2.39 -0.02 1.60 16 50 H 0.11 1.52 7.32 -2.39 -0.02 1.50 16 Total: -1.00 -79.07 381.06 -0.49 -79.55 By element: Atomic # 1 Polarization: 39.44 SS G_CDS: -0.31 Total: 39.14 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 5.59 Total: -2.47 kcal Atomic # 7 Polarization: -133.22 SS G_CDS: -7.75 Total: -140.97 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.05 Total: -25.86 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 2.03 Total: 50.62 kcal Total: -79.07 -0.49 -79.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134858942.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.048 kcal (2) G-P(sol) polarization free energy of solvation -79.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds