Wall clock time and date at job start Tue Mar 31 2020 09:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46954 * 110.99966 * 2 1 4 4 C 1.53057 * 109.36263 * 183.18687 * 3 2 1 5 5 N 1.46956 * 109.36162 * 301.59585 * 4 3 2 6 6 C 1.46899 * 110.99677 * 183.18894 * 5 4 3 7 7 C 1.52994 * 109.47189 * 170.00022 * 6 5 4 8 8 C 1.50707 * 109.47501 * 179.97438 * 7 6 5 9 9 O 1.21275 * 119.99471 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99972 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99571 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.41395 * 324.86054 * 11 10 8 13 13 C 1.52959 * 109.41481 * 84.64857 * 11 10 8 14 14 C 1.53225 * 109.40687 * 183.70466 * 13 11 10 15 15 C 1.51266 * 108.53676 * 305.36956 * 14 13 11 16 16 C 1.37883 * 120.85250 * 231.32638 * 15 14 13 17 17 N 1.31512 * 119.99804 * 180.02562 * 16 15 14 18 18 Si 1.86795 * 119.99792 * 0.02562 * 16 15 14 19 19 H 1.48506 * 109.46816 * 90.00123 * 18 16 15 20 20 H 1.48499 * 109.47141 * 209.99905 * 18 16 15 21 21 H 1.48495 * 109.47086 * 330.00162 * 18 16 15 22 22 C 1.51278 * 118.29794 * 51.34689 * 15 14 13 23 23 C 1.52959 * 109.41266 * 205.00085 * 11 10 8 24 24 C 1.46954 * 110.88042 * 59.32472 * 5 4 3 25 25 C 1.46956 * 110.99532 * 123.79595 * 2 1 3 26 26 H 1.08995 * 109.46979 * 296.20808 * 1 2 3 27 27 H 1.08999 * 109.46510 * 56.20057 * 1 2 3 28 28 H 1.08991 * 109.47119 * 176.20060 * 1 2 3 29 29 H 1.08997 * 109.49355 * 63.21813 * 3 2 1 30 30 H 1.09004 * 109.48943 * 303.15264 * 3 2 1 31 31 H 1.09002 * 109.48707 * 181.63135 * 4 3 2 32 32 H 1.09002 * 109.48655 * 61.56567 * 4 3 2 33 33 H 1.09003 * 109.47063 * 289.99903 * 6 5 4 34 34 H 1.09002 * 109.47208 * 50.00081 * 6 5 4 35 35 H 1.08996 * 109.47606 * 300.00201 * 7 6 5 36 36 H 1.09002 * 109.46997 * 59.99930 * 7 6 5 37 37 H 0.96997 * 120.00349 * 0.02562 * 10 8 7 38 38 H 1.08999 * 109.47924 * 303.68013 * 13 11 10 39 39 H 1.08998 * 109.48497 * 63.72082 * 13 11 10 40 40 H 1.09005 * 109.63102 * 185.65825 * 14 13 11 41 41 H 1.08995 * 109.78720 * 65.17682 * 14 13 11 42 42 H 0.97003 * 119.99907 * 180.02562 * 17 16 15 43 43 H 1.09000 * 109.62365 * 188.93758 * 22 15 14 44 44 H 1.08996 * 109.62712 * 68.37228 * 22 15 14 45 45 H 1.09005 * 109.48142 * 296.27559 * 23 11 10 46 46 H 1.08991 * 109.48466 * 56.31712 * 23 11 10 47 47 H 1.08997 * 109.49355 * 60.64341 * 24 5 4 48 48 H 1.09004 * 109.48943 * 180.70890 * 24 5 4 49 49 H 1.09002 * 109.48908 * 56.84799 * 25 2 1 50 50 H 1.09000 * 109.51082 * 296.78688 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5236 1.3290 -0.0803 5 7 4.0501 0.5659 1.0599 6 6 5.5191 0.5658 1.0599 7 6 6.0290 -0.0162 2.3797 8 6 7.5361 -0.0168 2.3796 9 8 8.1425 0.4062 1.4182 10 7 8.2099 -0.4883 3.4473 11 6 9.6749 -0.4884 3.4473 12 1 10.0372 -0.6901 2.4393 13 6 10.1834 0.8799 3.9045 14 6 11.7128 0.9101 3.8161 15 6 12.2633 -0.2556 4.6074 16 6 13.2424 -0.0645 5.5594 17 7 13.7094 -1.0901 6.2373 18 14 13.9052 1.6510 5.8861 19 1 13.0950 2.3009 6.9474 20 1 15.3195 1.5591 6.3295 21 1 13.8281 2.4568 4.6412 22 6 11.7126 -1.6364 4.3273 23 6 10.1832 -1.5743 4.3971 24 6 3.5235 -0.8061 1.0599 25 6 1.9956 -0.7632 1.1402 26 1 -0.3633 0.4538 0.9220 27 1 -0.3632 0.5717 -0.8540 28 1 -0.3633 -1.0253 -0.0681 29 1 1.6938 1.8774 0.9173 30 1 1.6014 1.9128 -0.8603 31 1 3.9179 2.3448 -0.0512 32 1 3.8254 0.8478 -1.0106 33 1 5.8824 -0.0412 0.2307 34 1 5.8824 1.5875 0.9489 35 1 5.6657 0.5907 3.2090 36 1 5.6657 -1.0378 2.4908 37 1 7.7249 -0.8277 4.2157 38 1 9.7668 1.6556 3.2621 39 1 9.8752 1.0566 4.9349 40 1 12.0853 1.8452 4.2346 41 1 12.0240 0.8254 2.7750 42 1 14.3979 -0.9557 6.9072 43 1 12.0851 -2.3375 5.0742 44 1 12.0210 -1.9587 3.3328 45 1 9.8750 -1.3396 5.4159 46 1 9.7666 -2.5378 4.1039 47 1 3.8254 -1.3116 0.1426 48 1 3.9178 -1.3470 1.9202 49 1 1.6013 -1.7789 1.1111 50 1 1.6938 -0.2823 2.0706 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143236607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:54:35 Heat of formation + Delta-G solvation = -43.841905 kcal Electronic energy + Delta-G solvation = -25864.231765 eV Core-core repulsion = 22311.306852 eV Total energy + Delta-G solvation = -3552.924913 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.89407 -39.24361 -36.87651 -35.88252 -33.67591 -31.98531 -31.36447 -31.03498 -29.66704 -28.26535 -26.96582 -24.55296 -23.88694 -22.79431 -21.72453 -21.40871 -20.07439 -19.86041 -19.38299 -17.22299 -16.29340 -15.85334 -15.77703 -15.67337 -15.38927 -15.20979 -14.82419 -14.52926 -14.39821 -14.26291 -13.43092 -13.15034 -13.04454 -12.84354 -12.72901 -12.56511 -12.30478 -12.18100 -12.05745 -11.80403 -11.65150 -11.58516 -11.38428 -11.05893 -11.01217 -10.85779 -10.80920 -10.69908 -10.14715 -9.98689 -9.69165 -9.48864 -8.99013 -8.83609 -8.79167 -8.56243 -8.47181 -8.29902 -6.10931 -4.01284 2.95523 3.26572 3.33786 3.36188 3.39161 3.55152 3.87767 4.38736 4.52755 4.62101 4.69913 4.88095 4.95661 4.97387 5.07743 5.13747 5.16412 5.17392 5.19258 5.24512 5.41742 5.46265 5.50223 5.59268 5.64501 5.67666 5.75732 5.82268 5.88706 5.91498 6.20785 6.48256 6.49699 6.56479 6.59591 6.71676 6.78655 6.81999 6.82921 6.89728 6.96762 7.10230 7.25663 7.44381 7.64570 7.71304 7.77047 7.95743 8.37829 8.59366 8.95775 9.54385 10.98596 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.038723 B = 0.002222 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.914584 B =12600.963530 C =12977.415453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.547 5.547 3 C 0.057 3.943 4 C 0.057 3.943 5 N -0.542 5.542 6 C 0.073 3.927 7 C -0.138 4.138 8 C 0.509 3.491 9 O -0.547 6.547 10 N -0.725 5.725 11 C 0.154 3.846 12 H 0.077 0.923 13 C -0.113 4.113 14 C -0.014 4.014 15 C -0.488 4.488 16 C 0.075 3.925 17 N -0.890 5.890 18 Si 0.888 3.112 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.267 1.267 22 C 0.012 3.988 23 C -0.114 4.114 24 C 0.051 3.949 25 C 0.057 3.943 26 H 0.026 0.974 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.043 0.957 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.394 0.606 38 H 0.036 0.964 39 H 0.050 0.950 40 H 0.030 0.970 41 H 0.019 0.981 42 H 0.264 0.736 43 H 0.061 0.939 44 H 0.006 0.994 45 H 0.054 0.946 46 H 0.035 0.965 47 H 0.044 0.956 48 H 0.083 0.917 49 H 0.078 0.922 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.835 1.354 -8.193 26.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.071 4.071 4 C -0.071 4.071 5 N -0.268 5.268 6 C -0.055 4.055 7 C -0.178 4.178 8 C 0.294 3.706 9 O -0.425 6.425 10 N -0.374 5.374 11 C 0.051 3.949 12 H 0.095 0.905 13 C -0.152 4.152 14 C -0.052 4.052 15 C -0.507 4.507 16 C -0.127 4.127 17 N -0.528 5.528 18 Si 0.717 3.283 19 H -0.205 1.205 20 H -0.216 1.216 21 H -0.192 1.192 22 C -0.025 4.025 23 C -0.152 4.152 24 C -0.077 4.077 25 C -0.071 4.071 26 H 0.044 0.956 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.102 0.898 35 H 0.116 0.884 36 H 0.107 0.893 37 H 0.227 0.773 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.049 0.951 41 H 0.037 0.963 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.024 0.976 45 H 0.073 0.927 46 H 0.053 0.947 47 H 0.062 0.938 48 H 0.101 0.899 49 H 0.097 0.903 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -24.254 1.597 -8.745 25.831 hybrid contribution 0.083 0.726 0.776 1.066 sum -24.170 2.323 -7.969 25.556 Atomic orbital electron populations 1.22341 0.87159 1.02244 1.00536 1.62160 1.07845 1.14126 1.43078 1.22178 0.94652 0.89218 1.01053 1.22138 0.94062 0.98761 0.92146 1.62142 1.08008 1.13745 1.42859 1.21769 0.85507 1.02252 0.95944 1.21635 0.92574 1.03277 1.00319 1.20510 0.89595 0.77621 0.82887 1.90692 1.70549 1.46766 1.34517 1.46425 1.08792 1.63508 1.18671 1.21039 0.76288 0.96982 1.00618 0.90497 1.21895 0.99165 0.94814 0.99303 1.19716 0.91178 0.96855 0.97441 1.20049 1.19786 0.91951 1.18943 1.24845 0.95814 0.96842 0.95230 1.69832 1.28668 1.30085 1.24226 0.86652 0.78015 0.85028 0.78642 1.20457 1.21647 1.19166 1.19342 0.88579 0.97384 0.97236 1.21923 1.00989 0.94623 0.97689 1.22237 0.94119 0.89889 1.01448 1.22176 0.94684 0.98399 0.91852 0.95575 0.91384 0.91338 0.93912 0.90308 0.90025 0.93805 0.93741 0.89830 0.88360 0.89319 0.77288 0.94512 0.93092 0.95129 0.96265 0.92609 0.92091 0.97577 0.92736 0.94657 0.93818 0.89910 0.90322 0.93896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.60 60.07 0.58 0.74 16 2 N -0.55 -4.53 4.97 -242.75 -1.21 -5.73 16 3 C 0.06 0.46 5.62 -3.77 -0.02 0.44 16 4 C 0.06 0.52 5.61 -3.76 -0.02 0.50 16 5 N -0.54 -5.35 4.71 -234.46 -1.10 -6.45 16 6 C 0.07 0.83 4.25 -3.83 -0.02 0.81 16 7 C -0.14 -1.50 5.63 -27.88 -0.16 -1.66 16 8 C 0.51 7.85 7.79 -10.98 -0.09 7.76 16 9 O -0.55 -10.73 15.64 5.56 0.09 -10.64 16 10 N -0.72 -11.19 5.07 -53.85 -0.27 -11.46 16 11 C 0.15 3.00 2.35 -67.97 -0.16 2.84 16 12 H 0.08 1.68 7.58 -51.93 -0.39 1.28 16 13 C -0.11 -2.38 5.50 -26.64 -0.15 -2.53 16 14 C -0.01 -0.33 5.59 -27.49 -0.15 -0.48 16 15 C -0.49 -12.84 5.51 -98.92 -0.55 -13.38 16 16 C 0.08 2.05 5.46 -17.82 -0.10 1.95 16 17 N -0.89 -25.40 12.73 55.43 0.71 -24.69 16 18 Si 0.89 21.24 27.27 -169.99 -4.64 16.61 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 21 H -0.27 -6.26 6.46 56.52 0.37 -5.90 16 22 C 0.01 0.31 5.97 -27.48 -0.16 0.14 16 23 C -0.11 -2.30 5.40 -26.64 -0.14 -2.45 16 24 C 0.05 0.45 5.41 -3.77 -0.02 0.43 16 25 C 0.06 0.45 5.62 -3.76 -0.02 0.43 16 26 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.07 0.38 8.13 -51.93 -0.42 -0.05 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.53 8.13 -51.93 -0.42 0.11 16 31 H 0.08 0.69 8.07 -51.93 -0.42 0.27 16 32 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.04 0.56 8.08 -51.93 -0.42 0.14 16 34 H 0.08 1.03 7.98 -51.93 -0.41 0.62 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.09 0.81 6.49 -51.93 -0.34 0.47 16 37 H 0.39 4.90 8.60 -40.82 -0.35 4.54 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.03 0.72 4.78 -51.93 -0.25 0.48 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.06 1.62 7.07 -51.93 -0.37 1.26 16 44 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 45 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.08 0.65 6.34 -51.93 -0.33 0.32 16 49 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 379.94 15.07 5.73 5.73 Total: -1.00 -30.47 379.94 -11.09 -41.56 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -9.21 Total: -0.45 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -1.18 Total: -4.46 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: -1.88 Total: -48.34 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.64 Total: 16.61 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.47 -11.09 -41.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143236607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.278 kcal (2) G-P(sol) polarization free energy of solvation -30.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds