Wall clock time and date at job start Tue Mar 31 2020 09:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36934 * 119.99435 * 2 1 4 4 H 1.08005 * 119.99305 * 191.24358 * 3 2 1 5 5 C 1.38804 * 120.00394 * 11.24089 * 3 2 1 6 6 N 1.31616 * 120.00365 * 12.94274 * 5 3 2 7 7 Si 1.86806 * 120.00141 * 192.93966 * 5 3 2 8 8 H 1.48497 * 109.46992 * 59.99893 * 7 5 3 9 9 H 1.48496 * 109.47192 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47102 * 300.00202 * 7 5 3 11 11 C 1.46497 * 120.00045 * 179.97438 * 2 1 3 12 12 C 1.53003 * 109.47160 * 84.17062 * 11 2 1 13 13 H 1.09004 * 109.69866 * 300.19380 * 12 11 2 14 14 C 1.53621 * 109.66493 * 60.78407 * 12 11 2 15 15 C 1.53040 * 109.24109 * 174.54964 * 14 12 11 16 16 C 1.53036 * 109.54031 * 298.51172 * 15 14 12 17 17 C 1.53198 * 109.31350 * 61.36518 * 16 15 14 18 18 N 1.46921 * 109.58566 * 179.83801 * 12 11 2 19 19 C 1.34777 * 120.63227 * 6.63038 * 18 12 11 20 20 O 1.21284 * 120.00010 * 355.79299 * 19 18 12 21 21 C 1.50701 * 120.00166 * 175.80216 * 19 18 12 22 22 H 1.08996 * 110.90209 * 303.86090 * 21 19 18 23 23 C 1.55136 * 110.99156 * 179.97438 * 21 19 18 24 24 C 1.54324 * 103.01779 * 206.25554 * 23 21 19 25 25 N 1.47442 * 107.23461 * 22.28156 * 24 23 21 26 26 C 1.46907 * 110.99709 * 123.25850 * 25 24 23 27 27 C 1.47842 * 108.56489 * 0.99113 * 25 24 23 28 28 H 1.09000 * 109.46921 * 174.29814 * 1 2 3 29 29 H 1.08991 * 109.47318 * 294.29968 * 1 2 3 30 30 H 1.09002 * 109.46821 * 54.30307 * 1 2 3 31 31 H 0.97000 * 120.01001 * 180.02562 * 6 5 3 32 32 H 1.09003 * 109.47424 * 324.17059 * 11 2 1 33 33 H 1.08994 * 109.47120 * 204.16851 * 11 2 1 34 34 H 1.08996 * 109.63643 * 54.55989 * 14 12 11 35 35 H 1.08996 * 109.43001 * 294.41713 * 14 12 11 36 36 H 1.09000 * 109.45895 * 178.48839 * 15 14 12 37 37 H 1.09004 * 109.46255 * 58.53361 * 15 14 12 38 38 H 1.08999 * 109.50088 * 301.41432 * 16 15 14 39 39 H 1.08994 * 109.52824 * 181.33239 * 16 15 14 40 40 H 1.08992 * 109.58695 * 185.57816 * 17 16 15 41 41 H 1.09000 * 109.58546 * 65.14989 * 17 16 15 42 42 H 1.08993 * 110.70828 * 87.86919 * 23 21 19 43 43 H 1.09003 * 110.85652 * 324.70380 * 23 21 19 44 44 H 1.08997 * 109.88383 * 262.87178 * 24 23 21 45 45 H 1.08999 * 109.88790 * 141.69164 * 24 23 21 46 46 H 1.08995 * 109.46868 * 59.87617 * 26 25 24 47 47 H 1.08994 * 109.46454 * 179.87275 * 26 25 24 48 48 H 1.09003 * 109.46995 * 299.87172 * 26 25 24 49 49 H 1.09003 * 110.37537 * 94.73542 * 27 25 24 50 50 H 1.08997 * 110.37109 * 217.07133 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.2141 1.1949 -0.1824 5 6 1.4756 2.3765 0.2343 6 7 0.2463 2.3553 0.7041 7 14 2.3131 4.0089 -0.1170 8 1 2.6764 4.0794 -1.5551 9 1 1.3877 5.1217 0.2154 10 1 3.5412 4.1232 0.7100 11 6 2.1976 -1.2687 0.0006 12 6 2.3257 -1.7843 -1.4343 13 1 1.3338 -1.9367 -1.8599 14 6 3.1032 -0.7660 -2.2820 15 6 3.3439 -1.3496 -3.6761 16 6 4.1861 -2.6221 -3.5599 17 6 3.4258 -3.6586 -2.7266 18 7 3.0634 -3.0548 -1.4370 19 6 3.3965 -3.6580 -0.2787 20 8 3.1550 -3.1156 0.7788 21 6 4.0692 -5.0065 -0.2975 22 1 3.4708 -5.7319 -0.8487 23 6 4.3578 -5.5037 1.1434 24 6 5.5658 -6.4446 0.9510 25 7 6.2270 -6.0548 -0.3080 26 6 7.6395 -5.7220 -0.0796 27 6 5.4986 -4.9054 -0.8859 28 1 -0.3633 -1.0226 -0.1021 29 1 -0.3633 0.4229 0.9365 30 1 -0.3633 0.5997 -0.8346 31 1 -0.2250 3.1872 0.8675 32 1 1.6577 -1.9997 0.6025 33 1 3.1912 -1.1144 0.4212 34 1 4.0605 -0.5498 -1.8079 35 1 2.5232 0.1528 -2.3674 36 1 3.8720 -0.6193 -4.2893 37 1 2.3869 -1.5887 -4.1400 38 1 5.1333 -2.3884 -3.0738 39 1 4.3774 -3.0245 -4.5547 40 1 4.0605 -4.5283 -2.5574 41 1 2.5218 -3.9607 -3.2555 42 1 3.5029 -6.0505 1.5409 43 1 4.6183 -4.6708 1.7965 44 1 5.2245 -7.4777 0.8862 45 1 6.2595 -6.3326 1.7843 46 1 8.1547 -6.5889 0.3340 47 1 8.1037 -5.4402 -1.0247 48 1 7.7081 -4.8899 0.6212 49 1 5.9675 -3.9686 -0.5847 50 1 5.4680 -4.9831 -1.9727 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158866549.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:53:45 Heat of formation + Delta-G solvation = 17.494131 kcal Electronic energy + Delta-G solvation = -27894.123013 eV Core-core repulsion = 24343.857830 eV Total energy + Delta-G solvation = -3550.265183 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.66361 -38.68601 -37.01845 -35.44730 -32.93256 -32.36845 -31.64782 -30.09648 -29.09798 -26.70255 -25.88282 -25.68547 -24.39435 -22.87806 -21.86740 -21.22090 -20.46415 -20.11135 -18.55550 -17.16034 -16.62868 -16.14448 -15.63351 -15.24225 -14.99780 -14.53514 -14.42335 -14.04638 -13.95061 -13.63057 -13.47457 -13.37045 -13.12966 -13.03638 -12.63223 -12.54279 -12.22708 -11.89060 -11.63503 -11.58074 -11.54418 -11.31855 -11.08239 -10.94859 -10.84443 -10.73709 -10.65142 -10.50062 -10.38542 -10.21070 -10.03983 -9.82784 -9.65792 -8.87537 -8.58583 -8.44568 -8.16537 -6.69823 -5.50459 -2.97181 2.83163 3.16586 3.45006 3.50110 3.50916 3.78004 4.32634 4.48216 4.59620 4.65885 4.81252 4.98320 5.01944 5.06133 5.11287 5.16364 5.22308 5.26971 5.38445 5.45908 5.50681 5.54623 5.56581 5.61537 5.69460 5.73256 5.77804 5.90351 5.94548 5.97408 6.03289 6.10012 6.16439 6.20713 6.47987 6.53843 6.63397 6.74016 6.75312 6.87441 6.97677 7.04602 7.34742 7.58148 7.72591 7.86935 8.03801 8.45300 8.56680 9.39094 10.05123 10.49428 11.46660 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.017808 B = 0.003955 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.912932 B = 7078.576129 C = 7462.114951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.608 5.608 3 C -0.238 4.238 4 H 0.070 0.930 5 C -0.007 4.007 6 N -0.914 5.914 7 Si 0.901 3.099 8 H -0.287 1.287 9 H -0.292 1.292 10 H -0.286 1.286 11 C 0.168 3.832 12 C 0.122 3.878 13 H 0.061 0.939 14 C -0.118 4.118 15 C -0.121 4.121 16 C -0.132 4.132 17 C 0.098 3.902 18 N -0.603 5.603 19 C 0.516 3.484 20 O -0.520 6.520 21 C -0.121 4.121 22 H 0.105 0.895 23 C -0.123 4.123 24 C 0.040 3.960 25 N -0.534 5.534 26 C 0.018 3.982 27 C 0.050 3.950 28 H -0.007 1.007 29 H 0.063 0.937 30 H 0.017 0.983 31 H 0.249 0.751 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.092 0.908 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.057 0.943 46 H 0.068 0.932 47 H 0.068 0.932 48 H 0.029 0.971 49 H 0.054 0.946 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.345 -18.228 -7.201 22.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.331 5.331 3 C -0.367 4.367 4 H 0.088 0.912 5 C -0.204 4.204 6 N -0.562 5.562 7 Si 0.732 3.268 8 H -0.214 1.214 9 H -0.218 1.218 10 H -0.212 1.212 11 C 0.040 3.960 12 C 0.018 3.982 13 H 0.079 0.921 14 C -0.156 4.156 15 C -0.159 4.159 16 C -0.171 4.171 17 C -0.025 4.025 18 N -0.337 5.337 19 C 0.303 3.697 20 O -0.396 6.396 21 C -0.143 4.143 22 H 0.123 0.877 23 C -0.161 4.161 24 C -0.088 4.088 25 N -0.258 5.258 26 C -0.130 4.130 27 C -0.077 4.077 28 H 0.012 0.988 29 H 0.081 0.919 30 H 0.036 0.964 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.097 0.903 45 H 0.076 0.924 46 H 0.087 0.913 47 H 0.087 0.913 48 H 0.048 0.952 49 H 0.072 0.928 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.092 -18.190 -6.906 21.919 hybrid contribution 0.455 1.635 0.038 1.697 sum 10.547 -16.555 -6.868 20.796 Atomic orbital electron populations 1.21044 0.82536 0.93231 1.01868 1.44284 1.02142 1.01124 1.85583 1.19218 0.92513 0.84090 1.40929 0.91219 1.24827 0.96680 0.97699 1.01157 1.70094 1.11894 1.25057 1.49160 0.86369 0.78366 0.84050 0.78048 1.21385 1.21753 1.21236 1.21337 0.97356 0.87226 0.90058 1.22591 0.92909 0.80668 1.02064 0.92093 1.21941 1.00879 0.99531 0.93287 1.21575 0.99508 0.96413 0.98419 1.21897 0.99227 0.96465 0.99466 1.21918 0.99588 0.96289 0.84719 1.48344 1.56447 1.23814 1.05082 1.20274 0.79138 0.86363 0.83946 1.90815 1.53361 1.64560 1.30821 1.22493 0.96883 0.95930 0.98960 0.87707 1.22657 0.98337 0.99700 0.95426 1.22896 0.95426 0.99815 0.90680 1.63645 1.02542 1.34441 1.25158 1.22558 0.89163 1.00139 1.01171 1.23196 0.91599 0.92863 1.00059 0.98786 0.91913 0.96404 0.94053 0.92456 0.92388 0.92445 0.88907 0.92212 0.92264 0.91770 0.91322 0.89509 0.91705 0.90215 0.89761 0.90287 0.92414 0.91276 0.91328 0.95208 0.92812 0.89174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.11 9.04 59.85 0.54 4.66 16 2 N -0.61 -15.92 2.64 -181.12 -0.48 -16.40 16 3 C -0.24 -6.66 8.26 -15.06 -0.12 -6.79 16 4 H 0.07 1.92 7.82 -52.48 -0.41 1.50 16 5 C -0.01 -0.21 5.30 -17.43 -0.09 -0.30 16 6 N -0.91 -27.39 9.99 55.49 0.55 -26.83 16 7 Si 0.90 22.45 29.57 -169.99 -5.03 17.42 16 8 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 9 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 C 0.17 3.81 3.51 -4.04 -0.01 3.79 16 12 C 0.12 2.24 3.21 -67.38 -0.22 2.03 16 13 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 14 C -0.12 -2.08 4.68 -26.39 -0.12 -2.20 16 15 C -0.12 -1.62 5.88 -26.69 -0.16 -1.77 16 16 C -0.13 -1.41 6.08 -26.61 -0.16 -1.58 16 17 C 0.10 1.06 6.06 -3.70 -0.02 1.04 16 18 N -0.60 -8.93 2.97 -164.96 -0.49 -9.42 16 19 C 0.52 7.98 6.99 -10.98 -0.08 7.90 16 20 O -0.52 -10.21 11.12 5.55 0.06 -10.14 16 21 C -0.12 -1.38 2.42 -89.64 -0.22 -1.59 16 22 H 0.10 1.04 7.96 -51.93 -0.41 0.63 16 23 C -0.12 -1.37 6.07 -24.91 -0.15 -1.52 16 24 C 0.04 0.37 6.90 -2.83 -0.02 0.35 16 25 N -0.53 -5.22 5.44 -239.52 -1.30 -6.52 16 26 C 0.02 0.15 9.12 60.07 0.55 0.70 16 27 C 0.05 0.52 5.45 -2.30 -0.01 0.51 16 28 H -0.01 -0.15 7.91 -51.93 -0.41 -0.56 16 29 H 0.06 1.81 6.45 -51.93 -0.33 1.47 16 30 H 0.02 0.48 7.81 -51.93 -0.41 0.07 16 31 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.06 1.37 6.37 -51.93 -0.33 1.04 16 33 H 0.06 1.42 6.91 -51.93 -0.36 1.07 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.09 1.93 7.02 -51.93 -0.36 1.56 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 0.76 3.81 -51.93 -0.20 0.56 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.08 1.13 7.40 -51.93 -0.38 0.74 16 44 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.51 7.58 -51.93 -0.39 0.11 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.03 0.27 8.10 -51.93 -0.42 -0.15 16 49 H 0.05 0.63 7.67 -51.93 -0.40 0.23 16 50 H 0.09 0.80 6.04 -51.93 -0.31 0.49 16 LS Contribution 368.76 15.07 5.56 5.56 Total: -1.00 -31.72 368.76 -10.35 -42.07 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -8.92 Total: -0.95 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -0.30 Total: 5.22 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: -1.72 Total: -59.17 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.06 Total: -10.14 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.03 Total: 17.42 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.72 -10.35 -42.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158866549.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.563 kcal (2) G-P(sol) polarization free energy of solvation -31.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds