Wall clock time and date at job start Tue Mar 31 2020 09:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36934 * 119.99435 * 2 1 4 4 H 1.08005 * 119.99305 * 191.24358 * 3 2 1 5 5 C 1.38804 * 120.00394 * 11.24089 * 3 2 1 6 6 N 1.31616 * 120.00365 * 12.94274 * 5 3 2 7 7 Si 1.86806 * 120.00141 * 192.93966 * 5 3 2 8 8 H 1.48497 * 109.46992 * 59.99893 * 7 5 3 9 9 H 1.48496 * 109.47192 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47102 * 300.00202 * 7 5 3 11 11 C 1.46497 * 120.00045 * 179.97438 * 2 1 3 12 12 C 1.53003 * 109.47160 * 84.17062 * 11 2 1 13 13 H 1.09004 * 109.69866 * 300.19380 * 12 11 2 14 14 C 1.53621 * 109.66493 * 60.78407 * 12 11 2 15 15 C 1.53040 * 109.24109 * 174.54964 * 14 12 11 16 16 C 1.53036 * 109.54031 * 298.51172 * 15 14 12 17 17 C 1.53198 * 109.31350 * 61.36518 * 16 15 14 18 18 N 1.46921 * 109.58566 * 179.83801 * 12 11 2 19 19 C 1.34777 * 120.63227 * 6.63038 * 18 12 11 20 20 O 1.21284 * 120.00010 * 355.79299 * 19 18 12 21 21 C 1.50701 * 120.00166 * 175.80216 * 19 18 12 22 22 H 1.08996 * 110.90209 * 303.86090 * 21 19 18 23 23 C 1.55136 * 110.99156 * 179.97438 * 21 19 18 24 24 C 1.54324 * 103.01779 * 206.25554 * 23 21 19 25 25 N 1.47442 * 107.23461 * 22.28156 * 24 23 21 26 26 C 1.46907 * 110.99709 * 123.25850 * 25 24 23 27 27 C 1.47842 * 108.56489 * 0.99113 * 25 24 23 28 28 H 1.09000 * 109.46921 * 174.29814 * 1 2 3 29 29 H 1.08991 * 109.47318 * 294.29968 * 1 2 3 30 30 H 1.09002 * 109.46821 * 54.30307 * 1 2 3 31 31 H 0.97000 * 120.01001 * 180.02562 * 6 5 3 32 32 H 1.09003 * 109.47424 * 324.17059 * 11 2 1 33 33 H 1.08994 * 109.47120 * 204.16851 * 11 2 1 34 34 H 1.08996 * 109.63643 * 54.55989 * 14 12 11 35 35 H 1.08996 * 109.43001 * 294.41713 * 14 12 11 36 36 H 1.09000 * 109.45895 * 178.48839 * 15 14 12 37 37 H 1.09004 * 109.46255 * 58.53361 * 15 14 12 38 38 H 1.08999 * 109.50088 * 301.41432 * 16 15 14 39 39 H 1.08994 * 109.52824 * 181.33239 * 16 15 14 40 40 H 1.08992 * 109.58695 * 185.57816 * 17 16 15 41 41 H 1.09000 * 109.58546 * 65.14989 * 17 16 15 42 42 H 1.08993 * 110.70828 * 87.86919 * 23 21 19 43 43 H 1.09003 * 110.85652 * 324.70380 * 23 21 19 44 44 H 1.08997 * 109.88383 * 262.87178 * 24 23 21 45 45 H 1.08999 * 109.88790 * 141.69164 * 24 23 21 46 46 H 1.08995 * 109.46868 * 59.87617 * 26 25 24 47 47 H 1.08994 * 109.46454 * 179.87275 * 26 25 24 48 48 H 1.09003 * 109.46995 * 299.87172 * 26 25 24 49 49 H 1.09003 * 110.37537 * 94.73542 * 27 25 24 50 50 H 1.08997 * 110.37109 * 217.07133 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.2141 1.1949 -0.1824 5 6 1.4756 2.3765 0.2343 6 7 0.2463 2.3553 0.7041 7 14 2.3131 4.0089 -0.1170 8 1 2.6764 4.0794 -1.5551 9 1 1.3877 5.1217 0.2154 10 1 3.5412 4.1232 0.7100 11 6 2.1976 -1.2687 0.0006 12 6 2.3257 -1.7843 -1.4343 13 1 1.3338 -1.9367 -1.8599 14 6 3.1032 -0.7660 -2.2820 15 6 3.3439 -1.3496 -3.6761 16 6 4.1861 -2.6221 -3.5599 17 6 3.4258 -3.6586 -2.7266 18 7 3.0634 -3.0548 -1.4370 19 6 3.3965 -3.6580 -0.2787 20 8 3.1550 -3.1156 0.7788 21 6 4.0692 -5.0065 -0.2975 22 1 3.4708 -5.7319 -0.8487 23 6 4.3578 -5.5037 1.1434 24 6 5.5658 -6.4446 0.9510 25 7 6.2270 -6.0548 -0.3080 26 6 7.6395 -5.7220 -0.0796 27 6 5.4986 -4.9054 -0.8859 28 1 -0.3633 -1.0226 -0.1021 29 1 -0.3633 0.4229 0.9365 30 1 -0.3633 0.5997 -0.8346 31 1 -0.2250 3.1872 0.8675 32 1 1.6577 -1.9997 0.6025 33 1 3.1912 -1.1144 0.4212 34 1 4.0605 -0.5498 -1.8079 35 1 2.5232 0.1528 -2.3674 36 1 3.8720 -0.6193 -4.2893 37 1 2.3869 -1.5887 -4.1400 38 1 5.1333 -2.3884 -3.0738 39 1 4.3774 -3.0245 -4.5547 40 1 4.0605 -4.5283 -2.5574 41 1 2.5218 -3.9607 -3.2555 42 1 3.5029 -6.0505 1.5409 43 1 4.6183 -4.6708 1.7965 44 1 5.2245 -7.4777 0.8862 45 1 6.2595 -6.3326 1.7843 46 1 8.1547 -6.5889 0.3340 47 1 8.1037 -5.4402 -1.0247 48 1 7.7081 -4.8899 0.6212 49 1 5.9675 -3.9686 -0.5847 50 1 5.4680 -4.9831 -1.9727 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158866549.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:53:44 Heat of formation + Delta-G solvation = -3.211954 kcal Electronic energy + Delta-G solvation = -27895.020896 eV Core-core repulsion = 24343.857830 eV Total energy + Delta-G solvation = -3551.163066 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.85129 -39.67019 -38.27669 -37.33846 -34.22148 -33.74802 -32.91335 -31.72285 -30.00083 -28.14264 -27.96572 -26.74635 -25.65821 -24.25170 -23.12918 -22.27397 -21.82299 -21.35615 -19.73681 -18.78355 -18.15719 -17.28227 -16.85686 -16.75813 -16.23638 -15.94965 -15.53011 -15.37722 -15.07876 -14.90317 -14.78241 -14.54949 -14.45782 -14.22513 -14.11039 -13.91039 -13.59610 -13.33214 -12.81766 -12.72798 -12.68405 -12.56875 -12.45419 -12.36482 -12.23868 -12.16883 -12.14578 -12.00422 -11.81053 -11.74529 -11.68217 -11.48401 -11.32431 -10.69592 -10.25325 -9.49683 -9.35585 -8.84213 -7.70845 -5.20556 1.43408 1.45924 1.52793 1.62753 1.97774 2.52696 2.98658 3.32165 3.41867 3.61549 3.67348 3.82518 3.91402 3.97610 4.04157 4.15163 4.23101 4.25556 4.34390 4.37485 4.44833 4.50147 4.52875 4.63008 4.64337 4.72961 4.78960 4.81119 4.88676 4.95510 5.00390 5.02057 5.05836 5.07890 5.15277 5.18554 5.24592 5.26459 5.34775 5.42975 5.51655 5.61354 5.75384 5.81347 5.87262 6.00943 6.32637 6.53569 7.16999 7.25962 7.91947 8.32344 9.24986 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.017808 B = 0.003955 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.912932 B = 7078.576129 C = 7462.114951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.622 5.622 3 C -0.242 4.242 4 H 0.068 0.932 5 C -0.063 4.063 6 N -0.945 5.945 7 Si 0.967 3.033 8 H -0.276 1.276 9 H -0.293 1.293 10 H -0.281 1.281 11 C 0.180 3.820 12 C 0.135 3.865 13 H 0.058 0.942 14 C -0.110 4.110 15 C -0.116 4.116 16 C -0.126 4.126 17 C 0.094 3.906 18 N -0.602 5.602 19 C 0.509 3.491 20 O -0.572 6.572 21 C -0.110 4.110 22 H 0.132 0.868 23 C -0.124 4.124 24 C 0.044 3.956 25 N -0.533 5.533 26 C 0.016 3.984 27 C 0.056 3.944 28 H 0.018 0.982 29 H 0.032 0.968 30 H 0.001 0.999 31 H 0.245 0.755 32 H 0.042 0.958 33 H 0.031 0.969 34 H 0.039 0.961 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.107 0.893 40 H 0.115 0.885 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.052 0.948 44 H 0.097 0.903 45 H 0.060 0.940 46 H 0.082 0.918 47 H 0.078 0.922 48 H 0.017 0.983 49 H 0.033 0.967 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.074 -20.595 -9.838 25.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.347 5.347 3 C -0.372 4.372 4 H 0.086 0.914 5 C -0.256 4.256 6 N -0.594 5.594 7 Si 0.795 3.205 8 H -0.202 1.202 9 H -0.219 1.219 10 H -0.207 1.207 11 C 0.054 3.946 12 C 0.030 3.970 13 H 0.076 0.924 14 C -0.149 4.149 15 C -0.154 4.154 16 C -0.164 4.164 17 C -0.027 4.027 18 N -0.334 5.334 19 C 0.298 3.702 20 O -0.452 6.452 21 C -0.132 4.132 22 H 0.150 0.850 23 C -0.163 4.163 24 C -0.083 4.083 25 N -0.257 5.257 26 C -0.132 4.132 27 C -0.072 4.072 28 H 0.037 0.963 29 H 0.051 0.949 30 H 0.019 0.981 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.126 0.874 40 H 0.133 0.867 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.071 0.929 44 H 0.115 0.885 45 H 0.079 0.921 46 H 0.101 0.899 47 H 0.097 0.903 48 H 0.036 0.964 49 H 0.052 0.948 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 11.864 -20.613 -9.589 25.644 hybrid contribution -0.053 2.301 0.919 2.478 sum 11.812 -18.312 -8.670 23.453 Atomic orbital electron populations 1.20718 0.82672 0.94011 0.99523 1.44513 1.02318 1.01952 1.85939 1.19437 0.92618 0.85024 1.40092 0.91419 1.25613 0.97527 1.00962 1.01503 1.70297 1.13232 1.25417 1.50442 0.85336 0.77277 0.79647 0.78239 1.20228 1.21936 1.20717 1.21186 0.95071 0.85514 0.92797 1.21978 0.93700 0.82827 0.98534 0.92353 1.21775 0.98898 0.98066 0.96163 1.21537 1.00778 0.97963 0.95078 1.21898 0.98170 0.94861 1.01488 1.22277 1.01048 0.96949 0.82471 1.48374 1.55666 1.22430 1.06969 1.21061 0.78430 0.87565 0.83185 1.90794 1.55510 1.66137 1.32720 1.22480 0.97613 0.93462 0.99656 0.84978 1.22638 0.99590 0.99170 0.94921 1.22918 0.94527 1.00031 0.90859 1.63750 1.03075 1.33776 1.25138 1.22632 0.88617 1.00381 1.01586 1.23200 0.90390 0.92325 1.01269 0.96307 0.94940 0.98078 0.94582 0.94004 0.95019 0.94244 0.92662 0.91287 0.91462 0.92191 0.87443 0.86695 0.89908 0.89637 0.92909 0.88502 0.92106 0.89880 0.90296 0.96384 0.94825 0.86827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.54 9.04 127.77 1.15 10.70 16 2 N -0.62 -34.07 2.64 -726.94 -1.92 -35.99 16 3 C -0.24 -14.05 8.26 84.03 0.69 -13.36 16 4 H 0.07 3.87 7.82 -2.91 -0.02 3.85 16 5 C -0.06 -3.70 5.30 84.86 0.45 -3.25 16 6 N -0.94 -58.56 9.99 21.65 0.22 -58.35 16 7 Si 0.97 47.21 29.57 68.60 2.03 49.24 16 8 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 9 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 10 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 11 C 0.18 8.57 3.51 86.38 0.30 8.87 16 12 C 0.14 5.01 3.21 45.12 0.14 5.15 16 13 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 14 C -0.11 -3.92 4.68 30.82 0.14 -3.78 16 15 C -0.12 -2.81 5.88 30.62 0.18 -2.63 16 16 C -0.13 -2.19 6.08 30.67 0.19 -2.00 16 17 C 0.09 1.66 6.06 86.36 0.52 2.18 16 18 N -0.60 -17.09 2.97 -794.20 -2.36 -19.44 16 19 C 0.51 15.58 6.99 87.66 0.61 16.20 16 20 O -0.57 -23.54 11.12 -3.04 -0.03 -23.57 16 21 C -0.11 -2.29 2.42 -10.16 -0.02 -2.32 16 22 H 0.13 2.10 7.96 -2.39 -0.02 2.08 16 23 C -0.12 -2.68 6.07 31.78 0.19 -2.49 16 24 C 0.04 0.73 6.90 86.65 0.60 1.32 16 25 N -0.53 -8.86 5.44 -911.69 -4.96 -13.82 16 26 C 0.02 0.23 9.12 127.69 1.16 1.40 16 27 C 0.06 0.99 5.45 86.77 0.47 1.47 16 28 H 0.02 0.89 7.91 -2.39 -0.02 0.87 16 29 H 0.03 1.96 6.45 -2.39 -0.02 1.94 16 30 H 0.00 0.04 7.81 -2.39 -0.02 0.02 16 31 H 0.24 14.73 8.31 -92.71 -0.77 13.96 16 32 H 0.04 2.11 6.37 -2.39 -0.02 2.10 16 33 H 0.03 1.65 6.91 -2.39 -0.02 1.63 16 34 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.05 2.37 7.02 -2.39 -0.02 2.35 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 38 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.12 1.42 3.81 -2.39 -0.01 1.42 16 41 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.05 1.47 7.40 -2.39 -0.02 1.46 16 44 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.06 0.97 7.58 -2.39 -0.02 0.95 16 46 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.02 0.30 8.10 -2.39 -0.02 0.28 16 49 H 0.03 0.74 7.67 -2.39 -0.02 0.73 16 50 H 0.11 1.48 6.04 -2.39 -0.01 1.47 16 Total: -1.00 -73.42 368.76 0.67 -72.75 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.90 Total: 11.72 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: 6.80 Total: 17.46 kcal Atomic # 7 Polarization: -118.58 SS G_CDS: -9.02 Total: -127.60 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.03 Total: -23.57 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -73.42 0.67 -72.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158866549.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.536 kcal (2) G-P(sol) polarization free energy of solvation -73.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds