Wall clock time and date at job start Tue Mar 31 2020 10:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46898 * 111.00218 * 2 1 4 4 C 1.46901 * 111.00172 * 123.95850 * 2 1 3 5 5 H 1.09005 * 109.46731 * 298.98325 * 4 2 1 6 6 C 1.50703 * 109.47391 * 58.98140 * 4 2 1 7 7 O 1.21285 * 119.99541 * 28.39584 * 6 4 2 8 8 N 1.34770 * 120.00020 * 208.12104 * 6 4 2 9 9 C 1.46504 * 119.99787 * 175.01451 * 8 6 4 10 10 C 1.53005 * 109.46941 * 180.02562 * 9 8 6 11 11 C 1.53003 * 109.47041 * 184.59818 * 10 9 8 12 12 C 1.53001 * 115.54746 * 270.79277 * 11 10 9 13 13 N 1.46491 * 109.47504 * 303.18710 * 12 11 10 14 14 C 1.36936 * 120.00227 * 184.62794 * 13 12 11 15 15 H 1.07999 * 119.99729 * 0.02562 * 14 13 12 16 16 C 1.38817 * 119.99963 * 179.97438 * 14 13 12 17 17 N 1.31619 * 120.00203 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99890 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47066 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46996 * 120.00063 * 18 16 14 21 21 H 1.48497 * 109.46910 * 240.00036 * 18 16 14 22 22 C 1.52992 * 117.49830 * 125.08676 * 11 10 9 23 23 C 1.53000 * 117.49687 * 56.46275 * 11 10 9 24 24 C 1.52999 * 109.47124 * 178.98553 * 4 2 1 25 25 C 1.53003 * 117.49733 * 243.07842 * 24 4 2 26 26 C 1.53004 * 117.49661 * 174.42440 * 24 4 2 27 27 H 1.09006 * 109.47242 * 300.50846 * 1 2 3 28 28 H 1.09001 * 109.47382 * 60.51015 * 1 2 3 29 29 H 1.09004 * 109.47610 * 180.51073 * 1 2 3 30 30 H 1.08995 * 109.47164 * 183.95497 * 3 2 1 31 31 H 1.08995 * 109.47192 * 303.95541 * 3 2 1 32 32 H 1.08999 * 109.46869 * 63.95392 * 3 2 1 33 33 H 0.97004 * 120.00033 * 355.01725 * 8 6 4 34 34 H 1.08997 * 109.47137 * 299.99581 * 9 8 6 35 35 H 1.08995 * 109.47057 * 60.00012 * 9 8 6 36 36 H 1.08998 * 109.46972 * 304.59886 * 10 9 8 37 37 H 1.08998 * 109.47435 * 64.59799 * 10 9 8 38 38 H 1.09004 * 109.47111 * 63.19064 * 12 11 10 39 39 H 1.08999 * 109.47105 * 183.18256 * 12 11 10 40 40 H 0.97007 * 119.99725 * 4.62937 * 13 12 11 41 41 H 0.96998 * 120.00146 * 180.02562 * 17 16 14 42 42 H 1.09008 * 117.50147 * 359.97438 * 22 11 10 43 43 H 1.09004 * 117.50266 * 145.02206 * 22 11 10 44 44 H 1.09000 * 117.49356 * 214.97740 * 23 11 10 45 45 H 1.08998 * 117.50055 * 359.97438 * 23 11 10 46 46 H 1.08991 * 115.55212 * 28.75487 * 24 4 2 47 47 H 1.09005 * 117.49781 * 0.02562 * 25 24 4 48 48 H 1.09000 * 117.49714 * 145.01723 * 25 24 4 49 49 H 1.09001 * 117.49683 * 214.97725 * 26 24 4 50 50 H 1.09000 * 117.50012 * 359.97056 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 1 1.6607 -0.3095 2.0691 6 6 1.4920 -2.1846 1.0640 7 8 1.2286 -2.6796 -0.0114 8 7 1.3396 -2.9049 2.1929 9 6 0.7480 -4.2438 2.1332 10 6 0.6895 -4.8388 3.5416 11 6 0.1787 -6.2791 3.4660 12 6 -1.3398 -6.4460 3.5518 13 7 -1.8289 -5.8368 4.7909 14 6 -3.1505 -5.9459 5.1324 15 1 -3.8321 -6.4815 4.4884 16 6 -3.6138 -5.3690 6.3070 17 7 -2.7829 -4.7167 7.0921 18 14 -5.4165 -5.5186 6.7732 19 1 -6.1345 -6.2953 5.7309 20 1 -5.5339 -6.2165 8.0787 21 1 -6.0139 -4.1633 6.8808 22 6 1.0465 -7.3703 4.0958 23 6 0.9475 -7.2553 2.5734 24 6 3.5247 -0.7645 1.0894 25 6 4.2272 -2.1117 0.9093 26 6 4.2690 -1.4016 2.2646 27 1 -0.3634 0.5217 0.8854 28 1 -0.3634 0.5059 -0.8945 29 1 -0.3634 -1.0276 0.0092 30 1 3.0827 1.3432 -0.0709 31 1 1.5898 1.9163 -0.8524 32 1 1.7044 1.8723 0.9233 33 1 1.6216 -2.5368 3.0449 34 1 -0.2605 -4.1776 1.7250 35 1 1.3576 -4.8822 1.4937 36 1 1.6867 -4.8295 3.9816 37 1 0.0145 -4.2459 4.1588 38 1 -1.8079 -5.9573 2.6972 39 1 -1.5896 -7.5070 3.5452 40 1 -1.2165 -5.3560 5.3696 41 1 -3.1066 -4.3139 7.9130 42 1 1.9816 -7.0623 4.5638 43 1 0.5358 -8.2076 4.5716 44 1 0.3715 -8.0168 2.0476 45 1 1.8169 -6.8714 2.0397 46 1 3.9793 0.1071 0.6188 47 1 3.5998 -2.9991 0.8246 48 1 5.1442 -2.1263 0.3202 49 1 5.2136 -0.9492 2.5667 50 1 3.6693 -1.8214 3.0722 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165485269.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:05 Heat of formation + Delta-G solvation = 37.153392 kcal Electronic energy + Delta-G solvation = -26365.628882 eV Core-core repulsion = 22816.216189 eV Total energy + Delta-G solvation = -3549.412694 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.57941 -38.46761 -37.39344 -36.23797 -34.70415 -33.93624 -30.81230 -30.30448 -28.34119 -27.91307 -25.99155 -23.75757 -22.84878 -22.75564 -22.63736 -21.99187 -21.25271 -19.84549 -18.41063 -17.16437 -17.08742 -16.94683 -16.12665 -15.56803 -15.25861 -14.83132 -14.57522 -14.52296 -14.33065 -14.06919 -13.72263 -13.43316 -13.16405 -12.84118 -12.67714 -12.57573 -12.43964 -12.38679 -11.91854 -11.86255 -11.70273 -11.46328 -11.30405 -11.07208 -10.94108 -10.86109 -10.63504 -10.58786 -10.49224 -10.12820 -9.93325 -9.71944 -9.60879 -9.32303 -8.98724 -8.84741 -8.54042 -6.90895 -5.77529 -3.05089 2.60191 2.96401 3.42564 3.48666 3.50034 3.50623 3.75345 4.05374 4.40631 4.56037 4.60381 4.67546 4.70405 4.94097 5.02963 5.06551 5.09601 5.10578 5.14627 5.18922 5.29835 5.35807 5.40663 5.44315 5.52774 5.57059 5.60225 5.67359 5.68173 5.76592 5.83862 5.87077 5.90581 5.92765 6.15321 6.18099 6.20476 6.42223 6.45045 6.47941 6.58398 6.67038 6.75408 6.76784 6.83127 7.51382 7.70459 8.24841 8.41856 9.53511 10.11763 10.47270 11.45527 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.013494 B = 0.003233 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.549270 B = 8657.736251 C = 9799.996862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.522 5.522 3 C 0.022 3.978 4 C 0.096 3.904 5 H 0.063 0.937 6 C 0.520 3.480 7 O -0.519 6.519 8 N -0.731 5.731 9 C 0.126 3.874 10 C -0.093 4.093 11 C -0.118 4.118 12 C 0.188 3.812 13 N -0.728 5.728 14 C -0.237 4.237 15 H 0.070 0.930 16 C -0.014 4.014 17 N -0.934 5.934 18 Si 0.905 3.095 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.165 4.165 23 C -0.178 4.178 24 C -0.146 4.146 25 C -0.171 4.171 26 C -0.178 4.178 27 H 0.026 0.974 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.027 0.973 33 H 0.398 0.602 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.020 0.980 39 H 0.023 0.977 40 H 0.384 0.616 41 H 0.254 0.746 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.120 0.880 47 H 0.099 0.901 48 H 0.097 0.903 49 H 0.100 0.900 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.651 8.742 -11.169 21.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.246 5.246 3 C -0.126 4.126 4 C -0.015 4.015 5 H 0.080 0.920 6 C 0.305 3.695 7 O -0.394 6.394 8 N -0.383 5.383 9 C 0.003 3.997 10 C -0.131 4.131 11 C -0.119 4.119 12 C 0.061 3.939 13 N -0.373 5.373 14 C -0.368 4.368 15 H 0.088 0.912 16 C -0.210 4.210 17 N -0.583 5.583 18 Si 0.737 3.263 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.202 4.202 23 C -0.215 4.215 24 C -0.164 4.164 25 C -0.208 4.208 26 C -0.215 4.215 27 H 0.044 0.956 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.046 0.954 33 H 0.232 0.768 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.038 0.962 39 H 0.041 0.959 40 H 0.218 0.782 41 H 0.064 0.936 42 H 0.106 0.894 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.108 0.892 46 H 0.138 0.862 47 H 0.117 0.883 48 H 0.115 0.885 49 H 0.118 0.882 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 15.385 8.097 -12.411 21.361 hybrid contribution -0.988 0.678 1.763 2.132 sum 14.397 8.775 -10.648 19.941 Atomic orbital electron populations 1.22501 0.86334 1.03308 1.00754 1.61677 1.08461 1.13254 1.41204 1.22492 1.01121 0.88160 1.00826 1.21216 0.94029 0.92546 0.93750 0.91954 1.20204 0.77654 0.87417 0.84245 1.90715 1.49211 1.71325 1.28101 1.46186 1.64062 1.18393 1.09699 1.21390 0.98694 0.81719 0.97931 1.21282 1.01345 0.94772 0.95688 1.21564 0.95305 0.90528 1.04525 1.20169 0.87395 0.96032 0.90330 1.42326 1.07849 1.64972 1.22113 1.19290 0.85693 1.28226 1.03589 0.91195 1.24711 0.97793 1.00945 0.97541 1.69664 1.33543 1.40839 1.14235 0.86133 0.84970 0.77192 0.78025 1.20562 1.21905 1.21911 1.23000 1.00989 1.01311 0.94884 1.22981 1.02428 1.02674 0.93459 1.22207 0.91437 0.98779 1.03990 1.23104 1.02736 0.95699 0.99305 1.23073 1.02305 1.04152 0.92000 0.95566 0.90836 0.90433 0.90873 0.90920 0.95421 0.76802 0.91203 0.91567 0.91863 0.89317 0.96205 0.95936 0.78151 0.93646 0.89357 0.88704 0.88945 0.89179 0.86207 0.88302 0.88481 0.88177 0.88712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.27 60.06 0.56 0.77 16 2 N -0.52 -5.95 4.61 -244.59 -1.13 -7.08 16 3 C 0.02 0.18 9.27 60.06 0.56 0.74 16 4 C 0.10 1.06 2.23 -68.86 -0.15 0.91 16 5 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 6 C 0.52 7.01 3.54 -10.99 -0.04 6.98 16 7 O -0.52 -8.95 15.47 5.55 0.09 -8.86 16 8 N -0.73 -8.95 5.51 -60.29 -0.33 -9.28 16 9 C 0.13 1.75 5.56 -4.04 -0.02 1.72 16 10 C -0.09 -1.35 5.24 -26.73 -0.14 -1.49 16 11 C -0.12 -1.88 1.75 -154.51 -0.27 -2.15 16 12 C 0.19 3.80 6.14 -4.05 -0.02 3.78 16 13 N -0.73 -18.15 5.30 -59.91 -0.32 -18.47 16 14 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 15 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 16 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 17 N -0.93 -27.86 13.06 55.49 0.72 -27.13 16 18 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 C -0.16 -2.40 9.87 -26.73 -0.26 -2.66 16 23 C -0.18 -2.38 9.38 -26.73 -0.25 -2.63 16 24 C -0.15 -1.34 5.62 -90.62 -0.51 -1.85 16 25 C -0.17 -1.67 9.68 -26.69 -0.26 -1.93 16 26 C -0.18 -1.41 10.13 -26.69 -0.27 -1.68 16 27 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.08 6.22 -51.93 -0.32 0.76 16 30 H 0.07 0.52 5.89 -51.93 -0.31 0.22 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.40 4.06 7.62 -40.82 -0.31 3.75 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.07 0.92 6.91 -51.93 -0.36 0.56 16 36 H 0.06 0.80 7.88 -51.93 -0.41 0.39 16 37 H 0.09 1.52 6.85 -51.93 -0.36 1.16 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.02 0.47 8.10 -51.93 -0.42 0.05 16 40 H 0.38 9.95 6.64 -40.82 -0.27 9.68 16 41 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.09 1.16 8.04 -51.92 -0.42 0.74 16 43 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 44 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.09 1.08 7.35 -51.93 -0.38 0.70 16 46 H 0.12 0.97 5.85 -51.93 -0.30 0.67 16 47 H 0.10 1.18 6.36 -51.93 -0.33 0.85 16 48 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 50 H 0.09 0.73 7.25 -51.93 -0.38 0.35 16 LS Contribution 394.64 15.07 5.95 5.95 Total: -1.00 -32.33 394.64 -10.14 -42.47 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -8.76 Total: 11.77 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -1.34 Total: -6.75 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: -1.05 Total: -61.95 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.33 -10.14 -42.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165485269.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.626 kcal (2) G-P(sol) polarization free energy of solvation -32.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds