Wall clock time and date at job start Tue Mar 31 2020 10:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46898 * 111.00218 * 2 1 4 4 C 1.46901 * 111.00172 * 123.95850 * 2 1 3 5 5 H 1.09005 * 109.46731 * 298.98325 * 4 2 1 6 6 C 1.50703 * 109.47391 * 58.98140 * 4 2 1 7 7 O 1.21285 * 119.99541 * 28.39584 * 6 4 2 8 8 N 1.34770 * 120.00020 * 208.12104 * 6 4 2 9 9 C 1.46504 * 119.99787 * 175.01451 * 8 6 4 10 10 C 1.53005 * 109.46941 * 180.02562 * 9 8 6 11 11 C 1.53003 * 109.47041 * 184.59818 * 10 9 8 12 12 C 1.53001 * 115.54746 * 270.79277 * 11 10 9 13 13 N 1.46491 * 109.47504 * 303.18710 * 12 11 10 14 14 C 1.36936 * 120.00227 * 184.62794 * 13 12 11 15 15 H 1.07999 * 119.99729 * 0.02562 * 14 13 12 16 16 C 1.38817 * 119.99963 * 179.97438 * 14 13 12 17 17 N 1.31619 * 120.00203 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99890 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47066 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46996 * 120.00063 * 18 16 14 21 21 H 1.48497 * 109.46910 * 240.00036 * 18 16 14 22 22 C 1.52992 * 117.49830 * 125.08676 * 11 10 9 23 23 C 1.53000 * 117.49687 * 56.46275 * 11 10 9 24 24 C 1.52999 * 109.47124 * 178.98553 * 4 2 1 25 25 C 1.53003 * 117.49733 * 243.07842 * 24 4 2 26 26 C 1.53004 * 117.49661 * 174.42440 * 24 4 2 27 27 H 1.09006 * 109.47242 * 300.50846 * 1 2 3 28 28 H 1.09001 * 109.47382 * 60.51015 * 1 2 3 29 29 H 1.09004 * 109.47610 * 180.51073 * 1 2 3 30 30 H 1.08995 * 109.47164 * 183.95497 * 3 2 1 31 31 H 1.08995 * 109.47192 * 303.95541 * 3 2 1 32 32 H 1.08999 * 109.46869 * 63.95392 * 3 2 1 33 33 H 0.97004 * 120.00033 * 355.01725 * 8 6 4 34 34 H 1.08997 * 109.47137 * 299.99581 * 9 8 6 35 35 H 1.08995 * 109.47057 * 60.00012 * 9 8 6 36 36 H 1.08998 * 109.46972 * 304.59886 * 10 9 8 37 37 H 1.08998 * 109.47435 * 64.59799 * 10 9 8 38 38 H 1.09004 * 109.47111 * 63.19064 * 12 11 10 39 39 H 1.08999 * 109.47105 * 183.18256 * 12 11 10 40 40 H 0.97007 * 119.99725 * 4.62937 * 13 12 11 41 41 H 0.96998 * 120.00146 * 180.02562 * 17 16 14 42 42 H 1.09008 * 117.50147 * 359.97438 * 22 11 10 43 43 H 1.09004 * 117.50266 * 145.02206 * 22 11 10 44 44 H 1.09000 * 117.49356 * 214.97740 * 23 11 10 45 45 H 1.08998 * 117.50055 * 359.97438 * 23 11 10 46 46 H 1.08991 * 115.55212 * 28.75487 * 24 4 2 47 47 H 1.09005 * 117.49781 * 0.02562 * 25 24 4 48 48 H 1.09000 * 117.49714 * 145.01723 * 25 24 4 49 49 H 1.09001 * 117.49683 * 214.97725 * 26 24 4 50 50 H 1.09000 * 117.50012 * 359.97056 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 1 1.6607 -0.3095 2.0691 6 6 1.4920 -2.1846 1.0640 7 8 1.2286 -2.6796 -0.0114 8 7 1.3396 -2.9049 2.1929 9 6 0.7480 -4.2438 2.1332 10 6 0.6895 -4.8388 3.5416 11 6 0.1787 -6.2791 3.4660 12 6 -1.3398 -6.4460 3.5518 13 7 -1.8289 -5.8368 4.7909 14 6 -3.1505 -5.9459 5.1324 15 1 -3.8321 -6.4815 4.4884 16 6 -3.6138 -5.3690 6.3070 17 7 -2.7829 -4.7167 7.0921 18 14 -5.4165 -5.5186 6.7732 19 1 -6.1345 -6.2953 5.7309 20 1 -5.5339 -6.2165 8.0787 21 1 -6.0139 -4.1633 6.8808 22 6 1.0465 -7.3703 4.0958 23 6 0.9475 -7.2553 2.5734 24 6 3.5247 -0.7645 1.0894 25 6 4.2272 -2.1117 0.9093 26 6 4.2690 -1.4016 2.2646 27 1 -0.3634 0.5217 0.8854 28 1 -0.3634 0.5059 -0.8945 29 1 -0.3634 -1.0276 0.0092 30 1 3.0827 1.3432 -0.0709 31 1 1.5898 1.9163 -0.8524 32 1 1.7044 1.8723 0.9233 33 1 1.6216 -2.5368 3.0449 34 1 -0.2605 -4.1776 1.7250 35 1 1.3576 -4.8822 1.4937 36 1 1.6867 -4.8295 3.9816 37 1 0.0145 -4.2459 4.1588 38 1 -1.8079 -5.9573 2.6972 39 1 -1.5896 -7.5070 3.5452 40 1 -1.2165 -5.3560 5.3696 41 1 -3.1066 -4.3139 7.9130 42 1 1.9816 -7.0623 4.5638 43 1 0.5358 -8.2076 4.5716 44 1 0.3715 -8.0168 2.0476 45 1 1.8169 -6.8714 2.0397 46 1 3.9793 0.1071 0.6188 47 1 3.5998 -2.9991 0.8246 48 1 5.1442 -2.1263 0.3202 49 1 5.2136 -0.9492 2.5667 50 1 3.6693 -1.8214 3.0722 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165485269.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:04 Heat of formation + Delta-G solvation = 15.225128 kcal Electronic energy + Delta-G solvation = -26366.579763 eV Core-core repulsion = 22816.216189 eV Total energy + Delta-G solvation = -3550.363574 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.55897 -39.71058 -38.35504 -37.01116 -36.06515 -35.66099 -32.80717 -31.43926 -29.26210 -28.68825 -27.81444 -24.92332 -24.61167 -23.65806 -23.41134 -23.07534 -22.26072 -20.84482 -19.78858 -19.04638 -18.06581 -17.87932 -17.12234 -16.87679 -16.47315 -16.21145 -15.75957 -15.58763 -15.48237 -15.27246 -14.96744 -14.72834 -14.52591 -14.28558 -14.03005 -13.70593 -13.34011 -13.17971 -13.14564 -13.00454 -12.82550 -12.79644 -12.56001 -12.39182 -12.26731 -12.11719 -12.03217 -11.95482 -11.83231 -11.33306 -11.25859 -11.15056 -10.92984 -10.71749 -10.51776 -10.10875 -9.35244 -8.98118 -7.95904 -5.23343 1.46295 1.46356 1.55785 1.56556 2.00272 2.53555 2.71818 2.88328 2.99732 3.37704 3.59149 3.75053 3.82888 3.83654 3.87715 3.96474 4.03262 4.04950 4.19563 4.24810 4.32890 4.35749 4.38393 4.42069 4.46993 4.59859 4.61669 4.70190 4.77316 4.83291 4.90033 4.92587 4.93781 4.97774 5.02504 5.06359 5.17257 5.20738 5.23132 5.25571 5.32536 5.35287 5.42499 5.48592 5.83762 5.98912 6.26929 6.52103 7.21446 7.34137 8.09789 8.35937 9.27559 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.013494 B = 0.003233 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.549270 B = 8657.736251 C = 9799.996862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.541 5.541 3 C 0.022 3.978 4 C 0.098 3.902 5 H 0.074 0.926 6 C 0.520 3.480 7 O -0.562 6.562 8 N -0.722 5.722 9 C 0.137 3.863 10 C -0.078 4.078 11 C -0.140 4.140 12 C 0.189 3.811 13 N -0.736 5.736 14 C -0.247 4.247 15 H 0.070 0.930 16 C -0.070 4.070 17 N -0.965 5.965 18 Si 0.969 3.031 19 H -0.270 1.270 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.161 4.161 23 C -0.152 4.152 24 C -0.148 4.148 25 C -0.186 4.186 26 C -0.159 4.159 27 H 0.033 0.967 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.036 0.964 33 H 0.409 0.591 34 H 0.040 0.960 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.058 0.942 38 H 0.010 0.990 39 H 0.019 0.981 40 H 0.377 0.623 41 H 0.251 0.749 42 H 0.108 0.892 43 H 0.082 0.918 44 H 0.096 0.904 45 H 0.111 0.889 46 H 0.136 0.864 47 H 0.073 0.927 48 H 0.107 0.893 49 H 0.122 0.878 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.237 9.408 -11.200 22.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.266 5.266 3 C -0.125 4.125 4 C -0.014 4.014 5 H 0.091 0.909 6 C 0.307 3.693 7 O -0.439 6.439 8 N -0.375 5.375 9 C 0.014 3.986 10 C -0.116 4.116 11 C -0.141 4.141 12 C 0.062 3.938 13 N -0.379 5.379 14 C -0.378 4.378 15 H 0.088 0.912 16 C -0.263 4.263 17 N -0.616 5.616 18 Si 0.799 3.201 19 H -0.194 1.194 20 H -0.219 1.219 21 H -0.220 1.220 22 C -0.198 4.198 23 C -0.190 4.190 24 C -0.167 4.167 25 C -0.223 4.223 26 C -0.196 4.196 27 H 0.052 0.948 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.054 0.946 33 H 0.246 0.754 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.028 0.972 39 H 0.037 0.963 40 H 0.210 0.790 41 H 0.060 0.940 42 H 0.126 0.874 43 H 0.101 0.899 44 H 0.115 0.885 45 H 0.130 0.870 46 H 0.153 0.847 47 H 0.091 0.909 48 H 0.125 0.875 49 H 0.140 0.860 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 16.984 8.756 -12.447 22.804 hybrid contribution -1.484 0.436 1.708 2.304 sum 15.500 9.192 -10.739 20.978 Atomic orbital electron populations 1.22421 0.87002 1.01479 1.01685 1.61681 1.08138 1.15147 1.41644 1.22572 1.01882 0.86451 1.01616 1.21252 0.95314 0.90586 0.94222 0.90861 1.20724 0.76616 0.88378 0.83609 1.90686 1.51182 1.72404 1.29674 1.46094 1.63417 1.17803 1.10191 1.21150 0.97281 0.82680 0.97534 1.21109 1.01756 0.93427 0.95327 1.21411 0.92783 0.92074 1.07817 1.20211 0.90631 0.94960 0.87970 1.42467 1.06948 1.65151 1.23368 1.19642 0.87104 1.27541 1.03559 0.91208 1.25478 1.01797 1.01250 0.97768 1.69801 1.35227 1.41968 1.14556 0.85132 0.80348 0.76982 0.77660 1.19439 1.21860 1.21952 1.23058 1.01023 0.99862 0.95901 1.23049 1.02036 1.00911 0.92970 1.22264 0.90084 0.99041 1.05277 1.23071 1.02912 0.94999 1.01363 1.23173 1.02829 1.02564 0.91068 0.94839 0.89731 0.93557 0.89524 0.90145 0.94578 0.75438 0.94143 0.91092 0.89305 0.92298 0.97176 0.96336 0.78955 0.93971 0.87365 0.89927 0.88519 0.87035 0.84664 0.90851 0.87482 0.86017 0.88541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.27 127.69 1.18 1.70 16 2 N -0.54 -11.86 4.61 -927.74 -4.28 -16.14 16 3 C 0.02 0.31 9.27 127.69 1.18 1.50 16 4 C 0.10 2.06 2.23 44.17 0.10 2.15 16 5 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 6 C 0.52 14.10 3.54 87.66 0.31 14.41 16 7 O -0.56 -19.96 15.47 -3.05 -0.05 -20.01 16 8 N -0.72 -17.58 5.51 -463.05 -2.55 -20.13 16 9 C 0.14 3.84 5.56 86.38 0.48 4.32 16 10 C -0.08 -2.24 5.24 30.60 0.16 -2.08 16 11 C -0.14 -4.38 1.75 -52.18 -0.09 -4.47 16 12 C 0.19 7.77 6.14 86.38 0.53 8.30 16 13 N -0.74 -37.49 5.30 -343.46 -1.82 -39.31 16 14 C -0.25 -13.95 9.99 84.03 0.84 -13.12 16 15 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 16 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 17 N -0.96 -58.32 13.06 21.65 0.28 -58.04 16 18 Si 0.97 46.36 29.55 68.60 2.03 48.38 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 21 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 22 C -0.16 -4.42 9.87 30.59 0.30 -4.12 16 23 C -0.15 -3.77 9.38 30.59 0.29 -3.48 16 24 C -0.15 -2.43 5.62 -10.79 -0.06 -2.49 16 25 C -0.19 -3.35 9.68 30.62 0.30 -3.05 16 26 C -0.16 -2.09 10.13 30.62 0.31 -1.78 16 27 H 0.03 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.05 1.35 6.22 -2.38 -0.01 1.33 16 30 H 0.09 1.01 5.89 -2.39 -0.01 0.99 16 31 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.41 8.00 7.62 -92.71 -0.71 7.29 16 34 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.07 1.93 6.91 -2.39 -0.02 1.92 16 36 H 0.09 2.08 7.88 -2.39 -0.02 2.06 16 37 H 0.06 2.06 6.85 -2.39 -0.02 2.04 16 38 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 39 H 0.02 0.78 8.10 -2.39 -0.02 0.76 16 40 H 0.38 20.04 6.64 -92.70 -0.62 19.43 16 41 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 42 H 0.11 2.54 8.04 -2.38 -0.02 2.52 16 43 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 44 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.11 2.34 7.35 -2.39 -0.02 2.32 16 46 H 0.14 1.80 5.85 -2.39 -0.01 1.78 16 47 H 0.07 1.72 6.36 -2.38 -0.02 1.71 16 48 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.10 1.24 7.25 -2.39 -0.02 1.22 16 Total: -1.00 -70.93 394.64 -0.48 -71.41 By element: Atomic # 1 Polarization: 40.01 SS G_CDS: -0.39 Total: 39.62 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: 6.30 Total: -5.79 kcal Atomic # 7 Polarization: -125.25 SS G_CDS: -8.37 Total: -133.62 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.05 Total: -20.01 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Total: -70.93 -0.48 -71.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165485269.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.640 kcal (2) G-P(sol) polarization free energy of solvation -70.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds