Wall clock time and date at job start Tue Mar 31 2020 09:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46848 * 111.00275 * 2 1 4 4 C 1.53038 * 109.52432 * 174.16187 * 3 2 1 5 5 C 1.53111 * 109.27930 * 59.17861 * 4 3 2 6 6 C 1.53123 * 109.16506 * 302.34932 * 5 4 3 7 7 C 1.46846 * 110.99857 * 235.79136 * 2 1 3 8 8 H 1.09003 * 109.45237 * 65.83256 * 7 2 1 9 9 C 1.50696 * 109.46521 * 305.85621 * 7 2 1 10 10 O 1.21279 * 119.99729 * 330.54370 * 9 7 2 11 11 N 1.34779 * 120.00166 * 150.54037 * 9 7 2 12 12 C 1.46505 * 120.00032 * 174.95353 * 11 9 7 13 13 C 1.52996 * 109.46906 * 184.95844 * 12 11 9 14 14 C 1.53000 * 109.46937 * 175.40699 * 13 12 11 15 15 C 1.53002 * 115.55354 * 39.91388 * 14 13 12 16 16 N 1.46500 * 109.46598 * 64.65120 * 15 14 13 17 17 C 1.36939 * 119.99562 * 185.09014 * 16 15 14 18 18 H 1.08000 * 119.99961 * 4.94670 * 17 16 15 19 19 C 1.38818 * 119.99575 * 184.94635 * 17 16 15 20 20 N 1.31618 * 119.99462 * 184.26972 * 19 17 16 21 21 Si 1.86794 * 120.00234 * 4.26979 * 19 17 16 22 22 H 1.48497 * 109.46948 * 93.22214 * 21 19 17 23 23 H 1.48496 * 109.47154 * 213.22294 * 21 19 17 24 24 H 1.48503 * 109.47317 * 333.22322 * 21 19 17 25 25 C 1.53003 * 117.49667 * 254.20908 * 14 13 12 26 26 C 1.52991 * 60.00042 * 252.50919 * 25 14 13 27 27 H 1.08994 * 109.46999 * 190.71390 * 1 2 3 28 28 H 1.09002 * 109.46969 * 310.71578 * 1 2 3 29 29 H 1.09001 * 109.47212 * 70.71256 * 1 2 3 30 30 H 1.08998 * 109.45893 * 54.14520 * 3 2 1 31 31 H 1.08991 * 109.45427 * 294.17326 * 3 2 1 32 32 H 1.09004 * 109.49885 * 299.23905 * 4 3 2 33 33 H 1.08998 * 109.50401 * 179.12620 * 4 3 2 34 34 H 1.09005 * 109.52538 * 182.43977 * 5 4 3 35 35 H 1.09005 * 109.57487 * 62.28413 * 5 4 3 36 36 H 1.08998 * 109.49752 * 297.71003 * 6 5 4 37 37 H 1.09001 * 109.53476 * 177.61214 * 6 5 4 38 38 H 0.96999 * 120.00235 * 354.95444 * 11 9 7 39 39 H 1.09001 * 109.46648 * 64.95683 * 12 11 9 40 40 H 1.09000 * 109.46686 * 304.95761 * 12 11 9 41 41 H 1.09004 * 109.47421 * 295.39953 * 13 12 11 42 42 H 1.08998 * 109.47511 * 55.40099 * 13 12 11 43 43 H 1.08992 * 109.47135 * 184.64783 * 15 14 13 44 44 H 1.08999 * 109.46712 * 304.65168 * 15 14 13 45 45 H 0.96995 * 120.00385 * 5.08542 * 16 15 14 46 46 H 0.97005 * 119.99976 * 180.02562 * 20 19 17 47 47 H 1.09003 * 117.49732 * 359.97438 * 25 14 13 48 48 H 1.08999 * 117.49983 * 145.01497 * 25 14 13 49 49 H 1.09003 * 117.50126 * 252.50633 * 26 25 14 50 50 H 1.09005 * 117.52116 * 107.48385 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 0.1467 5 6 4.1188 0.5369 -1.0143 6 6 3.5181 -0.8715 -1.0209 7 6 1.9952 -0.7708 -1.1338 8 1 1.7324 -0.2706 -2.0659 9 6 1.3982 -2.1543 -1.1207 10 8 1.0731 -2.6646 -0.0696 11 7 1.2254 -2.8247 -2.2771 12 6 0.7489 -4.2100 -2.2566 13 6 0.7580 -4.7734 -3.6790 14 6 0.3703 -6.2531 -3.6439 15 6 -0.7510 -6.6186 -2.6691 16 7 -1.9947 -5.9688 -3.0899 17 6 -3.1158 -6.0658 -2.3095 18 1 -3.0631 -6.5525 -1.3468 19 6 -4.3199 -5.5387 -2.7559 20 7 -5.3770 -5.5568 -1.9719 21 14 -4.4399 -4.8037 -4.4690 22 1 -4.9055 -5.8431 -5.4219 23 1 -5.4049 -3.6752 -4.4569 24 1 -3.1045 -4.3088 -4.8899 25 6 1.4839 -7.2803 -3.8577 26 6 0.4481 -7.0351 -4.9566 27 1 -0.3633 -1.0097 0.1910 28 1 -0.3633 0.6704 0.7789 29 1 -0.3634 0.3394 -0.9700 30 1 1.5635 1.9257 0.8330 31 1 1.7325 1.8606 -0.9376 32 1 3.7814 0.8566 1.0906 33 1 3.9100 2.3511 0.1311 34 1 5.1998 0.4713 -0.8905 35 1 3.8897 1.0350 -1.9565 36 1 3.7814 -1.3837 -0.0955 37 1 3.9098 -1.4309 -1.8706 38 1 1.4165 -2.3901 -3.1229 39 1 -0.2662 -4.2391 -1.8606 40 1 1.4032 -4.8098 -1.6240 41 1 0.0425 -4.2249 -4.2917 42 1 1.7559 -4.6692 -4.1048 43 1 -0.8896 -7.6997 -2.6637 44 1 -0.4856 -6.2812 -1.6672 45 1 -2.0242 -5.4699 -3.9211 46 1 -6.2186 -5.1887 -2.2839 47 1 2.4925 -6.9020 -4.0238 48 1 1.4179 -8.2167 -3.3037 49 1 -0.2994 -7.8103 -5.1257 50 1 0.7749 -6.4954 -5.8454 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165764707.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:38 Heat of formation + Delta-G solvation = -1.234240 kcal Electronic energy + Delta-G solvation = -26530.839784 eV Core-core repulsion = 22979.762478 eV Total energy + Delta-G solvation = -3551.077306 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.37640 -38.66268 -37.86315 -34.78610 -34.04715 -33.68307 -31.70951 -31.09562 -29.82420 -27.00212 -26.23092 -24.59365 -23.24368 -22.75111 -22.38587 -21.81281 -20.59249 -19.91754 -18.79872 -17.53292 -17.03925 -16.33433 -15.60571 -15.47694 -15.25560 -14.82298 -14.68665 -14.50419 -14.34163 -14.09851 -13.84004 -13.40329 -13.26984 -12.99698 -12.98281 -12.60158 -12.37538 -12.30665 -11.87862 -11.84263 -11.64179 -11.54877 -11.44070 -11.17368 -11.08591 -10.97996 -10.90420 -10.71802 -10.67600 -10.15689 -9.87772 -9.61298 -9.50891 -9.44419 -8.87704 -8.85097 -8.46297 -7.17676 -5.73435 -3.08144 2.70530 3.08957 3.35529 3.40558 3.45387 3.78029 3.94131 4.46041 4.52140 4.60952 4.63430 4.84455 4.86087 4.88401 4.94646 4.98409 5.06977 5.19915 5.23223 5.29019 5.35013 5.40608 5.44851 5.52074 5.55428 5.60902 5.65241 5.66413 5.72170 5.78615 5.81430 5.82969 5.90043 6.05110 6.08065 6.08901 6.22159 6.28813 6.33405 6.42366 6.54589 6.69985 6.75476 6.78479 6.89424 7.59604 8.05180 8.36150 8.46055 9.26178 9.97950 10.19215 11.45163 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.013280 B = 0.003661 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.980339 B = 7645.982261 C = 9023.351853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.520 5.520 3 C 0.056 3.944 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.106 4.106 7 C 0.072 3.928 8 H 0.056 0.944 9 C 0.513 3.487 10 O -0.514 6.514 11 N -0.731 5.731 12 C 0.119 3.881 13 C -0.085 4.085 14 C -0.127 4.127 15 C 0.189 3.811 16 N -0.751 5.751 17 C -0.240 4.240 18 H 0.089 0.911 19 C 0.004 3.996 20 N -0.933 5.933 21 Si 0.886 3.114 22 H -0.286 1.286 23 H -0.293 1.293 24 H -0.279 1.279 25 C -0.171 4.171 26 C -0.171 4.171 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.023 0.977 30 H 0.079 0.921 31 H 0.032 0.968 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.394 0.606 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.024 0.976 44 H 0.038 0.962 45 H 0.362 0.638 46 H 0.258 0.742 47 H 0.090 0.910 48 H 0.094 0.906 49 H 0.097 0.903 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.606 12.013 -3.213 24.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.245 5.245 3 C -0.072 4.072 4 C -0.157 4.157 5 C -0.157 4.157 6 C -0.144 4.144 7 C -0.040 4.040 8 H 0.073 0.927 9 C 0.297 3.703 10 O -0.388 6.388 11 N -0.383 5.383 12 C -0.003 4.003 13 C -0.122 4.122 14 C -0.128 4.128 15 C 0.062 3.938 16 N -0.397 5.397 17 C -0.370 4.370 18 H 0.107 0.893 19 C -0.191 4.191 20 N -0.582 5.582 21 Si 0.717 3.283 22 H -0.212 1.212 23 H -0.219 1.219 24 H -0.206 1.206 25 C -0.209 4.209 26 C -0.208 4.208 27 H 0.105 0.895 28 H 0.089 0.911 29 H 0.042 0.958 30 H 0.097 0.903 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.228 0.772 39 H 0.107 0.893 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.042 0.958 44 H 0.056 0.944 45 H 0.196 0.804 46 H 0.069 0.931 47 H 0.108 0.892 48 H 0.113 0.887 49 H 0.115 0.885 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 21.361 11.323 -1.795 24.243 hybrid contribution -0.532 1.168 -2.501 2.811 sum 20.828 12.490 -4.296 24.663 Atomic orbital electron populations 1.22546 0.86182 1.04436 1.00017 1.61673 1.08427 1.12852 1.41584 1.22151 0.95638 0.88787 1.00642 1.21619 0.94444 1.00111 0.99529 1.21574 1.00134 0.95241 0.98702 1.21528 0.91581 0.97899 1.03400 1.21614 0.96457 0.92406 0.93516 0.92674 1.20340 0.78691 0.87244 0.84011 1.90735 1.48420 1.68871 1.30742 1.46085 1.68684 1.15180 1.08375 1.21493 1.01593 0.80080 0.97178 1.21182 1.00745 0.94004 0.96315 1.21656 0.99418 0.91911 0.99794 1.20215 0.83779 0.95466 0.94332 1.42696 1.07852 1.63164 1.25994 1.19071 0.85936 1.32001 1.00035 0.89275 1.24676 0.95644 1.01107 0.97699 1.69714 1.01057 1.51514 1.35869 0.86516 0.76795 0.78799 0.86158 1.21239 1.21914 1.20605 1.23023 0.94144 1.00604 1.03109 1.22963 1.02160 1.03372 0.92290 0.89505 0.91105 0.95837 0.90275 0.94972 0.90766 0.91407 0.91290 0.92107 0.90169 0.91068 0.77235 0.89324 0.91476 0.91122 0.91942 0.95779 0.94409 0.80436 0.93144 0.89180 0.88742 0.88469 0.89350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.06 60.06 0.54 0.75 16 2 N -0.52 -6.35 4.51 -236.33 -1.07 -7.42 16 3 C 0.06 0.51 5.46 -3.83 -0.02 0.49 16 4 C -0.12 -0.91 6.09 -26.65 -0.16 -1.08 16 5 C -0.12 -0.86 6.00 -26.61 -0.16 -1.02 16 6 C -0.11 -0.98 5.36 -26.65 -0.14 -1.12 16 7 C 0.07 0.82 2.22 -68.88 -0.15 0.67 16 8 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 9 C 0.51 7.49 6.00 -10.99 -0.07 7.42 16 10 O -0.51 -9.85 15.19 5.56 0.08 -9.77 16 11 N -0.73 -9.40 5.55 -60.29 -0.33 -9.73 16 12 C 0.12 1.80 4.66 -4.04 -0.02 1.79 16 13 C -0.08 -1.13 5.35 -26.73 -0.14 -1.27 16 14 C -0.13 -1.89 1.84 -154.51 -0.28 -2.17 16 15 C 0.19 3.67 5.32 -4.04 -0.02 3.65 16 16 N -0.75 -17.73 5.27 -59.91 -0.32 -18.05 16 17 C -0.24 -6.88 10.47 -15.06 -0.16 -7.04 16 18 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 19 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 20 N -0.93 -29.76 13.97 55.49 0.78 -28.98 16 21 Si 0.89 22.34 27.97 -169.99 -4.75 17.59 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 24 H -0.28 -6.52 6.21 56.52 0.35 -6.17 16 25 C -0.17 -2.10 9.87 -26.73 -0.26 -2.36 16 26 C -0.17 -2.29 9.97 -26.74 -0.27 -2.56 16 27 H 0.09 1.41 6.21 -51.93 -0.32 1.09 16 28 H 0.07 0.80 7.97 -51.93 -0.41 0.39 16 29 H 0.02 0.28 8.12 -51.93 -0.42 -0.14 16 30 H 0.08 0.67 8.01 -51.93 -0.42 0.26 16 31 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.39 3.83 8.48 -40.82 -0.35 3.48 16 39 H 0.09 1.72 7.08 -51.93 -0.37 1.35 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.06 0.67 7.95 -51.93 -0.41 0.26 16 43 H 0.02 0.48 8.10 -51.93 -0.42 0.06 16 44 H 0.04 0.77 6.80 -51.93 -0.35 0.42 16 45 H 0.36 8.39 5.41 -40.82 -0.22 8.17 16 46 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 47 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 48 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 50 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 390.45 15.07 5.88 5.88 Total: -1.00 -34.03 390.45 -10.36 -44.39 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -9.22 Total: 9.91 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -1.41 Total: -3.83 kcal Atomic # 7 Polarization: -63.24 SS G_CDS: -0.94 Total: -64.18 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.08 Total: -9.77 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.75 Total: 17.59 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.03 -10.36 -44.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165764707.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.157 kcal (2) G-P(sol) polarization free energy of solvation -34.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds