Wall clock time and date at job start Tue Mar 31 2020 09:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46848 * 111.00275 * 2 1 4 4 C 1.53038 * 109.52432 * 174.16187 * 3 2 1 5 5 C 1.53111 * 109.27930 * 59.17861 * 4 3 2 6 6 C 1.53123 * 109.16506 * 302.34932 * 5 4 3 7 7 C 1.46846 * 110.99857 * 235.79136 * 2 1 3 8 8 H 1.09003 * 109.45237 * 65.83256 * 7 2 1 9 9 C 1.50696 * 109.46521 * 305.85621 * 7 2 1 10 10 O 1.21279 * 119.99729 * 330.54370 * 9 7 2 11 11 N 1.34779 * 120.00166 * 150.54037 * 9 7 2 12 12 C 1.46505 * 120.00032 * 174.95353 * 11 9 7 13 13 C 1.52996 * 109.46906 * 184.95844 * 12 11 9 14 14 C 1.53000 * 109.46937 * 175.40699 * 13 12 11 15 15 C 1.53002 * 115.55354 * 39.91388 * 14 13 12 16 16 N 1.46500 * 109.46598 * 64.65120 * 15 14 13 17 17 C 1.36939 * 119.99562 * 185.09014 * 16 15 14 18 18 H 1.08000 * 119.99961 * 4.94670 * 17 16 15 19 19 C 1.38818 * 119.99575 * 184.94635 * 17 16 15 20 20 N 1.31618 * 119.99462 * 184.26972 * 19 17 16 21 21 Si 1.86794 * 120.00234 * 4.26979 * 19 17 16 22 22 H 1.48497 * 109.46948 * 93.22214 * 21 19 17 23 23 H 1.48496 * 109.47154 * 213.22294 * 21 19 17 24 24 H 1.48503 * 109.47317 * 333.22322 * 21 19 17 25 25 C 1.53003 * 117.49667 * 254.20908 * 14 13 12 26 26 C 1.52991 * 60.00042 * 252.50919 * 25 14 13 27 27 H 1.08994 * 109.46999 * 190.71390 * 1 2 3 28 28 H 1.09002 * 109.46969 * 310.71578 * 1 2 3 29 29 H 1.09001 * 109.47212 * 70.71256 * 1 2 3 30 30 H 1.08998 * 109.45893 * 54.14520 * 3 2 1 31 31 H 1.08991 * 109.45427 * 294.17326 * 3 2 1 32 32 H 1.09004 * 109.49885 * 299.23905 * 4 3 2 33 33 H 1.08998 * 109.50401 * 179.12620 * 4 3 2 34 34 H 1.09005 * 109.52538 * 182.43977 * 5 4 3 35 35 H 1.09005 * 109.57487 * 62.28413 * 5 4 3 36 36 H 1.08998 * 109.49752 * 297.71003 * 6 5 4 37 37 H 1.09001 * 109.53476 * 177.61214 * 6 5 4 38 38 H 0.96999 * 120.00235 * 354.95444 * 11 9 7 39 39 H 1.09001 * 109.46648 * 64.95683 * 12 11 9 40 40 H 1.09000 * 109.46686 * 304.95761 * 12 11 9 41 41 H 1.09004 * 109.47421 * 295.39953 * 13 12 11 42 42 H 1.08998 * 109.47511 * 55.40099 * 13 12 11 43 43 H 1.08992 * 109.47135 * 184.64783 * 15 14 13 44 44 H 1.08999 * 109.46712 * 304.65168 * 15 14 13 45 45 H 0.96995 * 120.00385 * 5.08542 * 16 15 14 46 46 H 0.97005 * 119.99976 * 180.02562 * 20 19 17 47 47 H 1.09003 * 117.49732 * 359.97438 * 25 14 13 48 48 H 1.08999 * 117.49983 * 145.01497 * 25 14 13 49 49 H 1.09003 * 117.50126 * 252.50633 * 26 25 14 50 50 H 1.09005 * 117.52116 * 107.48385 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 0.1467 5 6 4.1188 0.5369 -1.0143 6 6 3.5181 -0.8715 -1.0209 7 6 1.9952 -0.7708 -1.1338 8 1 1.7324 -0.2706 -2.0659 9 6 1.3982 -2.1543 -1.1207 10 8 1.0731 -2.6646 -0.0696 11 7 1.2254 -2.8247 -2.2771 12 6 0.7489 -4.2100 -2.2566 13 6 0.7580 -4.7734 -3.6790 14 6 0.3703 -6.2531 -3.6439 15 6 -0.7510 -6.6186 -2.6691 16 7 -1.9947 -5.9688 -3.0899 17 6 -3.1158 -6.0658 -2.3095 18 1 -3.0631 -6.5525 -1.3468 19 6 -4.3199 -5.5387 -2.7559 20 7 -5.3770 -5.5568 -1.9719 21 14 -4.4399 -4.8037 -4.4690 22 1 -4.9055 -5.8431 -5.4219 23 1 -5.4049 -3.6752 -4.4569 24 1 -3.1045 -4.3088 -4.8899 25 6 1.4839 -7.2803 -3.8577 26 6 0.4481 -7.0351 -4.9566 27 1 -0.3633 -1.0097 0.1910 28 1 -0.3633 0.6704 0.7789 29 1 -0.3634 0.3394 -0.9700 30 1 1.5635 1.9257 0.8330 31 1 1.7325 1.8606 -0.9376 32 1 3.7814 0.8566 1.0906 33 1 3.9100 2.3511 0.1311 34 1 5.1998 0.4713 -0.8905 35 1 3.8897 1.0350 -1.9565 36 1 3.7814 -1.3837 -0.0955 37 1 3.9098 -1.4309 -1.8706 38 1 1.4165 -2.3901 -3.1229 39 1 -0.2662 -4.2391 -1.8606 40 1 1.4032 -4.8098 -1.6240 41 1 0.0425 -4.2249 -4.2917 42 1 1.7559 -4.6692 -4.1048 43 1 -0.8896 -7.6997 -2.6637 44 1 -0.4856 -6.2812 -1.6672 45 1 -2.0242 -5.4699 -3.9211 46 1 -6.2186 -5.1887 -2.2839 47 1 2.4925 -6.9020 -4.0238 48 1 1.4179 -8.2167 -3.3037 49 1 -0.2994 -7.8103 -5.1257 50 1 0.7749 -6.4954 -5.8454 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165764707.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:37 Heat of formation + Delta-G solvation = -26.343848 kcal Electronic energy + Delta-G solvation = -26531.928619 eV Core-core repulsion = 22979.762478 eV Total energy + Delta-G solvation = -3552.166140 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.41285 -39.80486 -38.89548 -36.10402 -35.88567 -34.47071 -33.25168 -32.57026 -30.87916 -28.11505 -27.81098 -25.57818 -24.29450 -24.06457 -23.64346 -23.04085 -21.65035 -20.73361 -20.37424 -19.22657 -18.17666 -17.41318 -16.75684 -16.61660 -16.43325 -16.35780 -15.84872 -15.49550 -15.41367 -15.27441 -15.08652 -14.88183 -14.48493 -14.12832 -14.06071 -13.93947 -13.83355 -13.44688 -13.20186 -13.03211 -12.88275 -12.77895 -12.57841 -12.39057 -12.23533 -12.18968 -11.93918 -11.86592 -11.79428 -11.62673 -11.34689 -11.11859 -10.99730 -10.67526 -10.55051 -10.09847 -9.33902 -9.28981 -8.04497 -5.37450 1.32066 1.39176 1.45779 1.57371 2.05250 2.46188 2.83625 2.90028 3.25932 3.60735 3.69934 3.76566 3.81150 3.92398 3.96186 4.02446 4.06630 4.11037 4.14875 4.28454 4.37062 4.41278 4.43687 4.48292 4.56006 4.60858 4.75460 4.81639 4.85189 4.92533 4.93713 4.98167 5.00507 5.04113 5.08476 5.13733 5.18138 5.21759 5.24735 5.29395 5.35493 5.45124 5.46848 5.73743 5.88435 6.07723 6.19676 6.57983 7.07140 7.27592 7.82855 8.05743 9.17730 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.013280 B = 0.003661 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.980339 B = 7645.982261 C = 9023.351853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.543 5.543 3 C 0.054 3.946 4 C -0.118 4.118 5 C -0.113 4.113 6 C -0.103 4.103 7 C 0.077 3.923 8 H 0.079 0.921 9 C 0.507 3.493 10 O -0.571 6.571 11 N -0.716 5.716 12 C 0.129 3.871 13 C -0.072 4.072 14 C -0.150 4.150 15 C 0.188 3.812 16 N -0.747 5.747 17 C -0.235 4.235 18 H 0.046 0.954 19 C -0.066 4.066 20 N -0.986 5.986 21 Si 0.962 3.038 22 H -0.278 1.278 23 H -0.296 1.296 24 H -0.247 1.247 25 C -0.147 4.147 26 C -0.164 4.164 27 H 0.044 0.956 28 H 0.081 0.919 29 H 0.031 0.969 30 H 0.081 0.919 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.090 0.910 38 H 0.414 0.586 39 H 0.035 0.965 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.104 0.896 43 H 0.016 0.984 44 H 0.018 0.982 45 H 0.369 0.631 46 H 0.258 0.742 47 H 0.121 0.879 48 H 0.092 0.908 49 H 0.082 0.918 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.972 13.960 -6.923 29.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.269 5.269 3 C -0.073 4.073 4 C -0.156 4.156 5 C -0.151 4.151 6 C -0.141 4.141 7 C -0.035 4.035 8 H 0.097 0.903 9 C 0.293 3.707 10 O -0.448 6.448 11 N -0.369 5.369 12 C 0.005 3.995 13 C -0.109 4.109 14 C -0.151 4.151 15 C 0.062 3.938 16 N -0.393 5.393 17 C -0.366 4.366 18 H 0.064 0.936 19 C -0.257 4.257 20 N -0.637 5.637 21 Si 0.789 3.211 22 H -0.205 1.205 23 H -0.223 1.223 24 H -0.171 1.171 25 C -0.185 4.185 26 C -0.201 4.201 27 H 0.063 0.937 28 H 0.100 0.900 29 H 0.050 0.950 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.108 0.892 38 H 0.251 0.749 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.123 0.877 43 H 0.034 0.966 44 H 0.036 0.964 45 H 0.203 0.797 46 H 0.066 0.934 47 H 0.139 0.861 48 H 0.110 0.890 49 H 0.101 0.899 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 24.800 13.276 -5.555 28.673 hybrid contribution -1.569 0.479 -1.186 2.024 sum 23.231 13.755 -6.741 27.827 Atomic orbital electron populations 1.22391 0.87359 1.02066 1.00824 1.61641 1.07662 1.14956 1.42591 1.22261 0.96657 0.86957 1.01424 1.21639 0.93288 1.01471 0.99167 1.21578 1.00808 0.93551 0.99157 1.21560 0.89917 0.99606 1.03016 1.21684 0.97553 0.89996 0.94277 0.90304 1.21110 0.77681 0.88448 0.83430 1.90711 1.50857 1.70401 1.32880 1.45936 1.67597 1.14340 1.09053 1.21191 0.98391 0.81417 0.98524 1.21123 1.02913 0.92411 0.94473 1.21477 0.99509 0.93771 1.00305 1.20248 0.83978 0.94400 0.95148 1.42590 1.07758 1.63496 1.25453 1.19013 0.87919 1.30667 0.99012 0.93564 1.25578 0.95062 1.02359 1.02700 1.69919 1.01844 1.53417 1.38478 0.85302 0.78149 0.77709 0.79967 1.20462 1.22295 1.17114 1.23142 0.94744 0.99231 1.01361 1.23043 1.02098 1.02417 0.92520 0.93714 0.89988 0.95039 0.90027 0.93689 0.92240 0.89067 0.89732 0.90449 0.92578 0.89154 0.74885 0.94621 0.92399 0.91512 0.87748 0.96593 0.96405 0.79727 0.93354 0.86056 0.88983 0.89923 0.86651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.06 127.69 1.16 1.74 16 2 N -0.54 -13.03 4.51 -901.62 -4.07 -17.09 16 3 C 0.05 0.88 5.46 86.33 0.47 1.35 16 4 C -0.12 -1.51 6.09 30.64 0.19 -1.32 16 5 C -0.11 -1.25 6.00 30.67 0.18 -1.07 16 6 C -0.10 -1.68 5.36 30.65 0.16 -1.51 16 7 C 0.08 1.63 2.22 44.19 0.10 1.73 16 8 H 0.08 1.31 8.14 -2.39 -0.02 1.30 16 9 C 0.51 14.96 6.00 87.66 0.53 15.49 16 10 O -0.57 -23.33 15.19 -3.03 -0.05 -23.38 16 11 N -0.72 -17.71 5.55 -463.06 -2.57 -20.28 16 12 C 0.13 3.90 4.66 86.38 0.40 4.30 16 13 C -0.07 -1.71 5.35 30.59 0.16 -1.55 16 14 C -0.15 -4.16 1.84 -52.18 -0.10 -4.26 16 15 C 0.19 7.50 5.32 86.38 0.46 7.96 16 16 N -0.75 -35.88 5.27 -343.45 -1.81 -37.69 16 17 C -0.24 -14.08 10.47 84.03 0.88 -13.20 16 18 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16 19 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 20 N -0.99 -65.57 13.97 21.65 0.30 -65.26 16 21 Si 0.96 46.40 27.97 68.60 1.92 48.32 16 22 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 23 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 24 H -0.25 -10.42 6.21 99.48 0.62 -9.80 16 25 C -0.15 -3.09 9.87 30.59 0.30 -2.79 16 26 C -0.16 -3.81 9.97 30.59 0.31 -3.50 16 27 H 0.04 1.57 6.21 -2.39 -0.01 1.55 16 28 H 0.08 1.91 7.97 -2.39 -0.02 1.89 16 29 H 0.03 0.75 8.12 -2.39 -0.02 0.74 16 30 H 0.08 1.27 8.01 -2.39 -0.02 1.25 16 31 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 37 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.41 6.83 8.48 -92.71 -0.79 6.04 16 39 H 0.04 1.46 7.08 -2.39 -0.02 1.45 16 40 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 42 H 0.10 1.68 7.95 -2.39 -0.02 1.66 16 43 H 0.02 0.66 8.10 -2.39 -0.02 0.64 16 44 H 0.02 0.78 6.80 -2.39 -0.02 0.77 16 45 H 0.37 16.64 5.41 -92.71 -0.50 16.14 16 46 H 0.26 16.23 8.31 -92.70 -0.77 15.46 16 47 H 0.12 1.86 8.08 -2.39 -0.02 1.84 16 48 H 0.09 1.99 8.14 -2.39 -0.02 1.98 16 49 H 0.08 2.18 8.14 -2.39 -0.02 2.17 16 50 H 0.12 2.10 8.14 -2.38 -0.02 2.08 16 Total: -1.00 -81.03 390.45 -1.07 -82.09 By element: Atomic # 1 Polarization: 33.94 SS G_CDS: -0.47 Total: 33.47 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 5.67 Total: -0.17 kcal Atomic # 7 Polarization: -132.18 SS G_CDS: -8.14 Total: -140.33 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.05 Total: -23.38 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.92 Total: 48.32 kcal Total: -81.03 -1.07 -82.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165764707.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.749 kcal (2) G-P(sol) polarization free energy of solvation -81.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds