Wall clock time and date at job start Tue Mar 31 2020 10:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99619 * 2 1 4 4 H 1.48504 * 109.47024 * 269.99684 * 3 2 1 5 5 H 1.48498 * 109.47574 * 29.99860 * 3 2 1 6 6 H 1.48499 * 109.46960 * 150.00185 * 3 2 1 7 7 C 1.37873 * 120.00259 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99856 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00070 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47209 * 174.47813 * 9 7 2 11 11 C 1.46904 * 110.99665 * 287.12732 * 10 9 7 12 12 H 1.09004 * 109.53335 * 187.85632 * 11 10 9 13 13 C 1.54197 * 109.53786 * 67.69263 * 11 10 9 14 14 C 1.46289 * 111.98451 * 162.59851 * 13 11 10 15 15 C 1.54121 * 112.19975 * 61.41887 * 14 13 11 16 16 O 1.40320 * 108.70142 * 280.43441 * 15 14 13 17 17 C 1.43991 * 116.57920 * 95.04524 * 16 15 14 18 18 C 1.50623 * 109.53739 * 308.02107 * 11 10 9 19 19 C 1.46899 * 110.99912 * 163.17297 * 10 9 7 20 20 C 1.52991 * 109.46625 * 303.95269 * 19 10 9 21 21 C 1.53007 * 109.46088 * 195.97359 * 20 19 10 22 22 C 1.53009 * 109.47161 * 284.05224 * 21 20 19 23 23 C 1.53003 * 109.45739 * 75.94305 * 22 21 20 24 24 C 1.52983 * 109.50604 * 44.01329 * 23 22 21 25 25 C 1.53003 * 109.48034 * 247.06433 * 24 23 22 26 26 C 1.52981 * 109.46641 * 183.91640 * 19 10 9 27 27 H 0.97000 * 120.00296 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47057 * 54.47479 * 9 7 2 29 29 H 1.08998 * 109.46832 * 294.47689 * 9 7 2 30 30 H 1.08993 * 108.98185 * 283.24523 * 13 11 10 31 31 H 1.09007 * 108.98247 * 42.04435 * 13 11 10 32 32 H 1.09000 * 108.93399 * 182.11362 * 14 13 11 33 33 H 1.08999 * 108.93970 * 300.71466 * 14 13 11 34 34 H 1.09004 * 109.59686 * 40.20031 * 15 14 13 35 35 H 1.08995 * 109.59763 * 160.66868 * 15 14 13 36 36 H 1.08996 * 108.69661 * 78.90311 * 17 16 15 37 37 H 1.09002 * 108.69701 * 196.88124 * 17 16 15 38 38 H 1.08998 * 108.88449 * 330.97170 * 18 11 10 39 39 H 1.08998 * 108.88246 * 89.43561 * 18 11 10 40 40 H 1.09003 * 109.45616 * 63.93404 * 19 10 9 41 41 H 1.09003 * 109.47137 * 75.98144 * 20 19 10 42 42 H 1.09000 * 109.47399 * 315.97339 * 20 19 10 43 43 H 1.09003 * 109.47404 * 44.05658 * 21 20 19 44 44 H 1.09006 * 109.47131 * 164.05331 * 21 20 19 45 45 H 1.08993 * 109.47786 * 195.93728 * 22 21 20 46 46 H 1.09005 * 109.47287 * 315.95083 * 22 21 20 47 47 H 1.08998 * 109.46147 * 164.02839 * 23 22 21 48 48 H 1.09002 * 109.46506 * 284.00348 * 23 22 21 49 49 H 1.09001 * 109.47095 * 7.07036 * 24 23 22 50 50 H 1.09001 * 109.46704 * 127.06133 * 24 23 22 51 51 H 1.09004 * 109.47490 * 195.94523 * 25 24 23 52 52 H 1.09000 * 109.47776 * 315.96741 * 25 24 23 53 53 H 1.09000 * 109.47247 * 112.94677 * 26 19 10 54 54 H 1.09008 * 109.46883 * 352.95025 * 26 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2002 -3.6124 -0.1344 11 6 2.7369 -3.6852 -1.4999 12 1 3.3263 -4.5953 -1.6119 13 6 3.6289 -2.4566 -1.7695 14 6 4.5044 -2.6583 -2.9241 15 6 3.7097 -2.8876 -4.2245 16 8 3.2730 -4.2207 -4.2558 17 6 1.9416 -4.4741 -3.7695 18 6 1.6002 -3.6964 -2.4881 19 6 1.5775 -4.8846 0.2550 20 6 1.0316 -4.7700 1.6796 21 6 0.7490 -6.1689 2.2313 22 6 -0.5391 -6.7120 1.6092 23 6 -0.2620 -7.1591 0.1724 24 6 1.0507 -7.9433 0.1256 25 6 2.0915 -7.1493 -0.6664 26 6 2.6209 -6.0019 0.1962 27 1 -0.4850 0.8400 -0.0004 28 1 0.5520 -2.5151 -0.8366 29 1 0.7011 -2.6011 0.9350 30 1 2.9933 -1.5906 -1.9537 31 1 4.2432 -2.2646 -0.8898 32 1 5.1367 -1.7789 -3.0464 33 1 5.1389 -3.5252 -2.7398 34 1 2.8484 -2.2200 -4.2492 35 1 4.3509 -2.6926 -5.0840 36 1 1.2278 -4.1995 -4.5461 37 1 1.8406 -5.5404 -3.5669 38 1 0.7292 -4.1538 -2.0187 39 1 1.3553 -2.6686 -2.7557 40 1 0.7609 -5.1138 -0.4296 41 1 0.1086 -4.1902 1.6694 42 1 1.7668 -4.2718 2.3116 43 1 1.5790 -6.8312 1.9849 44 1 0.6354 -6.1163 3.3142 45 1 -0.8940 -7.5618 2.1921 46 1 -1.2989 -5.9304 1.6064 47 1 -1.0772 -7.7943 -0.1739 48 1 -0.1851 -6.2834 -0.4721 49 1 1.4131 -8.1060 1.1407 50 1 0.8821 -8.9053 -0.3584 51 1 2.9161 -7.8062 -0.9435 52 1 1.6310 -6.7441 -1.5675 53 1 2.8198 -6.3668 1.2039 54 1 3.5427 -5.6156 -0.2389 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170823918.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:51 Heat of formation + Delta-G solvation = -55.244125 kcal Electronic energy + Delta-G solvation = -29382.056953 eV Core-core repulsion = 25932.177945 eV Total energy + Delta-G solvation = -3449.879007 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 309.241 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.44303 -39.86450 -37.76915 -34.75403 -34.70087 -33.83355 -33.07762 -31.58948 -28.97860 -27.86292 -26.78614 -26.55259 -25.31585 -23.79999 -22.59155 -21.93651 -21.30660 -20.34103 -19.74609 -18.36574 -17.71384 -17.40273 -16.99863 -16.52212 -16.23623 -15.84928 -15.57000 -15.00416 -14.97882 -14.83650 -14.60908 -14.51644 -14.17988 -14.11317 -13.74651 -13.53373 -13.44785 -13.19181 -12.95716 -12.67402 -12.60539 -12.49167 -12.33185 -12.24537 -11.99941 -11.85876 -11.70074 -11.63949 -11.52830 -11.42563 -11.27676 -11.08087 -11.00887 -10.87264 -10.76799 -10.70181 -10.43479 -10.30919 -8.74737 -8.11084 -6.14279 1.37910 1.39593 1.49716 2.42370 2.91309 3.20585 3.34196 3.74140 3.78653 3.95472 4.04733 4.07419 4.12290 4.19472 4.24554 4.31746 4.34678 4.37939 4.39734 4.42156 4.44464 4.57081 4.62546 4.64723 4.83656 4.85038 4.89504 4.93635 5.00545 5.05044 5.08640 5.11036 5.14228 5.20021 5.22363 5.25848 5.28775 5.31360 5.33010 5.38024 5.45168 5.47597 5.51706 5.54408 5.56847 5.68665 5.75452 5.77906 5.81752 6.24104 6.44244 6.56225 6.86938 7.00458 7.50593 8.98739 Molecular weight = 309.24amu Principal moments of inertia in cm(-1) A = 0.011423 B = 0.006303 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.543016 B = 4441.079343 C = 6145.695696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.000 4.000 3 Si 0.949 3.051 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.497 4.497 8 H 0.071 0.929 9 C 0.204 3.796 10 N -0.537 5.537 11 C 0.111 3.889 12 H 0.085 0.915 13 C -0.104 4.104 14 C -0.142 4.142 15 C 0.067 3.933 16 O -0.392 6.392 17 C 0.075 3.925 18 C -0.167 4.167 19 C 0.081 3.919 20 C -0.105 4.105 21 C -0.128 4.128 22 C -0.116 4.116 23 C -0.129 4.129 24 C -0.119 4.119 25 C -0.114 4.114 26 C -0.115 4.115 27 H 0.258 0.742 28 H -0.027 1.027 29 H 0.001 0.999 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.038 0.962 35 H 0.104 0.896 36 H 0.051 0.949 37 H 0.099 0.901 38 H 0.057 0.943 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.029 0.971 42 H 0.048 0.952 43 H 0.100 0.900 44 H 0.062 0.938 45 H 0.076 0.924 46 H 0.041 0.959 47 H 0.065 0.935 48 H 0.050 0.950 49 H 0.079 0.921 50 H 0.071 0.929 51 H 0.074 0.926 52 H 0.051 0.949 53 H 0.080 0.920 54 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.427 -15.320 -3.630 16.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.197 4.197 3 Si 0.775 3.225 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.536 4.536 8 H 0.089 0.911 9 C 0.078 3.922 10 N -0.260 5.260 11 C 0.002 3.998 12 H 0.103 0.897 13 C -0.142 4.142 14 C -0.180 4.180 15 C -0.010 4.010 16 O -0.311 6.311 17 C -0.001 4.001 18 C -0.206 4.206 19 C -0.027 4.027 20 C -0.143 4.143 21 C -0.165 4.165 22 C -0.153 4.153 23 C -0.167 4.167 24 C -0.156 4.156 25 C -0.151 4.151 26 C -0.153 4.153 27 H 0.066 0.934 28 H -0.009 1.009 29 H 0.019 0.981 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.122 0.878 36 H 0.070 0.930 37 H 0.117 0.883 38 H 0.076 0.924 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.048 0.952 42 H 0.067 0.933 43 H 0.117 0.883 44 H 0.080 0.920 45 H 0.095 0.905 46 H 0.059 0.941 47 H 0.084 0.916 48 H 0.069 0.931 49 H 0.098 0.902 50 H 0.090 0.910 51 H 0.093 0.907 52 H 0.070 0.930 53 H 0.098 0.902 54 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.785 -15.249 -3.346 16.329 hybrid contribution -1.230 1.923 -0.142 2.287 sum 3.555 -13.326 -3.488 14.227 Atomic orbital electron populations 1.70091 1.07490 1.27060 1.53392 1.25731 0.95455 1.02386 0.96089 0.85676 0.78829 0.79752 0.78214 1.20089 1.21501 1.19049 1.21729 0.94087 0.90726 1.47043 0.91063 1.19426 0.90148 0.88836 0.93808 1.62432 1.37045 1.03361 1.23201 1.21143 0.94204 0.98349 0.86065 0.89681 1.20768 0.97909 0.98073 0.97455 1.21138 0.98920 1.02557 0.95366 1.22432 0.97638 0.83234 0.97731 1.87367 1.32094 1.27659 1.83934 1.22847 0.83504 1.00301 0.93482 1.22428 1.00447 1.00066 0.97644 1.21943 0.95410 0.89697 0.95600 1.21611 0.99033 0.97445 0.96216 1.22043 0.99422 0.95548 0.99499 1.21596 0.96929 1.00243 0.96573 1.21860 0.98271 0.99757 0.96780 1.21772 0.94276 0.98272 1.01304 1.21688 0.98989 0.96686 0.97787 1.21901 0.97711 0.94450 1.01190 0.93365 1.00931 0.98118 0.92957 0.93054 0.90621 0.91159 0.94350 0.87822 0.93038 0.88319 0.92447 0.94360 0.94415 0.95174 0.93319 0.88252 0.91953 0.90546 0.94057 0.91623 0.93146 0.90241 0.91016 0.90723 0.93008 0.90209 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.62 13.29 21.45 0.28 -56.33 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.95 44.62 29.54 68.60 2.03 46.65 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.50 -27.31 6.73 25.60 0.17 -27.14 16 8 H 0.07 3.85 5.37 -2.91 -0.02 3.83 16 9 C 0.20 10.52 4.30 85.56 0.37 10.89 16 10 N -0.54 -22.28 4.31 -852.58 -3.68 -25.96 16 11 C 0.11 4.10 1.62 44.55 0.07 4.18 16 12 H 0.09 2.91 5.57 -2.38 -0.01 2.90 16 13 C -0.10 -4.00 3.11 28.93 0.09 -3.91 16 14 C -0.14 -4.29 5.47 28.91 0.16 -4.13 16 15 C 0.07 1.90 6.38 72.36 0.46 2.36 16 16 O -0.39 -11.62 10.17 -143.44 -1.46 -13.08 16 17 C 0.08 2.18 6.67 72.23 0.48 2.66 16 18 C -0.17 -6.04 3.38 30.07 0.10 -5.94 16 19 C 0.08 2.78 1.29 44.91 0.06 2.83 16 20 C -0.11 -3.65 4.13 30.59 0.13 -3.52 16 21 C -0.13 -3.25 5.33 30.60 0.16 -3.09 16 22 C -0.12 -2.73 5.71 30.60 0.17 -2.56 16 23 C -0.13 -2.92 5.48 30.59 0.17 -2.75 16 24 C -0.12 -2.27 5.47 30.59 0.17 -2.10 16 25 C -0.11 -2.47 5.59 30.60 0.17 -2.30 16 26 C -0.12 -3.12 4.65 30.59 0.14 -2.97 16 27 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 28 H -0.03 -1.52 5.92 -2.39 -0.01 -1.54 16 29 H 0.00 0.05 5.79 -2.39 -0.01 0.03 16 30 H 0.05 2.37 5.71 -2.39 -0.01 2.35 16 31 H 0.05 2.12 6.97 -2.38 -0.02 2.10 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.07 2.01 8.13 -2.39 -0.02 1.99 16 34 H 0.04 1.20 6.98 -2.38 -0.02 1.19 16 35 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.10 2.47 7.93 -2.39 -0.02 2.45 16 38 H 0.06 2.19 5.63 -2.39 -0.01 2.18 16 39 H 0.04 1.63 6.49 -2.39 -0.02 1.62 16 40 H 0.04 1.36 3.05 -2.39 -0.01 1.35 16 41 H 0.03 1.21 6.62 -2.39 -0.02 1.19 16 42 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 43 H 0.10 2.22 2.83 -2.39 -0.01 2.21 16 44 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 45 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.04 1.12 7.82 -2.38 -0.02 1.10 16 47 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.05 1.39 4.69 -2.39 -0.01 1.38 16 49 H 0.08 1.41 5.47 -2.39 -0.01 1.40 16 50 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 51 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 52 H 0.05 1.22 7.26 -2.39 -0.02 1.21 16 53 H 0.08 1.99 5.47 -2.39 -0.01 1.98 16 54 H 0.06 1.78 6.02 -2.38 -0.01 1.76 16 Total: -1.00 -62.30 360.71 1.60 -60.70 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 0.89 Total: 25.06 kcal Atomic # 6 Polarization: -40.58 SS G_CDS: 3.54 Total: -37.04 kcal Atomic # 7 Polarization: -78.90 SS G_CDS: -3.39 Total: -82.29 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -1.46 Total: -13.08 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -62.30 1.60 -60.70 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170823918.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.457 kcal (2) G-P(sol) polarization free energy of solvation -62.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds