Wall clock time and date at job start Tue Mar 31 2020 09:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09005 * 109.47520 * 2 1 4 4 C 1.52999 * 109.47473 * 120.00265 * 2 1 3 5 5 C 1.52997 * 109.47299 * 183.98125 * 4 2 1 6 6 C 1.50704 * 109.47360 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99366 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00128 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00028 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99749 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47191 * 59.99924 * 10 8 6 12 12 H 1.48502 * 109.46720 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47123 * 299.99693 * 10 8 6 14 14 N 1.46904 * 109.47332 * 240.00233 * 2 1 3 15 15 C 1.46866 * 110.99925 * 71.02358 * 14 2 1 16 16 C 1.53189 * 109.42583 * 173.49608 * 15 14 2 17 17 C 1.52286 * 109.34360 * 57.94151 * 16 15 14 18 18 C 1.54192 * 110.77764 * 181.18785 * 17 16 15 19 19 C 1.51840 * 102.29767 * 265.34957 * 18 17 16 20 20 N 1.37719 * 125.85479 * 165.12224 * 19 18 17 21 21 C 1.46499 * 119.99716 * 179.71484 * 20 19 18 22 22 C 1.46495 * 120.00316 * 359.70689 * 20 19 18 23 23 N 1.29026 * 108.28749 * 344.85056 * 19 18 17 24 24 O 1.41591 * 112.90348 * 359.97438 * 23 19 18 25 25 C 1.52273 * 110.97498 * 304.19385 * 17 16 15 26 26 C 1.46851 * 111.00016 * 306.64786 * 14 2 1 27 27 H 1.09000 * 109.47628 * 59.99496 * 1 2 3 28 28 H 1.09006 * 109.47000 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47296 * 299.99754 * 1 2 3 30 30 H 1.08995 * 109.47061 * 303.98213 * 4 2 1 31 31 H 1.08997 * 109.47349 * 63.98242 * 4 2 1 32 32 H 1.09008 * 109.47403 * 300.00016 * 5 4 2 33 33 H 1.09005 * 109.47423 * 59.99800 * 5 4 2 34 34 H 0.96997 * 119.99794 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.48158 * 53.50583 * 15 14 2 36 36 H 1.09005 * 109.48130 * 293.48289 * 15 14 2 37 37 H 1.08994 * 109.49112 * 297.98358 * 16 15 14 38 38 H 1.08999 * 109.51638 * 177.91645 * 16 15 14 39 39 H 1.09005 * 110.96175 * 147.10155 * 18 17 16 40 40 H 1.09005 * 110.75745 * 23.49702 * 18 17 16 41 41 H 1.08996 * 109.47305 * 269.99659 * 21 20 19 42 42 H 1.09001 * 109.47506 * 149.99457 * 21 20 19 43 43 H 1.09001 * 109.47197 * 29.99766 * 21 20 19 44 44 H 1.09002 * 109.47169 * 180.02562 * 22 20 19 45 45 H 1.08998 * 109.47443 * 300.00526 * 22 20 19 46 46 H 1.09001 * 109.47123 * 60.00695 * 22 20 19 47 47 H 1.09000 * 109.49373 * 175.76399 * 25 17 16 48 48 H 1.09005 * 109.48724 * 295.83383 * 25 17 16 49 49 H 1.09003 * 109.47739 * 306.47763 * 26 14 2 50 50 H 1.09004 * 109.47920 * 66.50056 * 26 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5667 -0.6351 1.3002 6 6 4.0691 -1.3450 2.5310 7 1 3.3694 -1.8114 3.2087 8 6 5.4219 -1.3991 2.7917 9 7 6.2740 -0.8316 1.9661 10 14 6.0446 -2.2797 4.3169 11 1 5.6312 -3.7052 4.2690 12 1 7.5264 -2.1959 4.3665 13 1 5.4713 -1.6385 5.5275 14 7 2.0196 -0.6925 -1.1995 15 6 1.7747 0.1081 -2.4062 16 6 2.4401 -0.5674 -3.6094 17 6 1.8902 -1.9792 -3.7631 18 6 2.5606 -2.7011 -4.9493 19 6 1.5817 -2.4417 -6.0807 20 7 1.8342 -2.6205 -7.4227 21 6 0.7893 -2.3351 -8.4090 22 6 3.1477 -3.0960 -7.8640 23 7 0.4710 -2.0305 -5.5689 24 8 0.5109 -1.9527 -4.1557 25 6 2.0764 -2.7793 -2.4810 26 6 1.4236 -2.0295 -1.3155 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6196 -0.2504 2.1377 31 1 1.7362 -1.7675 1.2142 32 1 3.9872 -1.1061 0.4116 33 1 3.8707 0.4111 1.3352 34 1 7.2257 -0.8700 2.1494 35 1 2.1933 1.1055 -2.2719 36 1 0.7014 0.1847 -2.5800 37 1 3.5176 -0.6120 -3.4515 38 1 2.2282 0.0058 -4.5120 39 1 2.6528 -3.7695 -4.7538 40 1 3.5332 -2.2610 -5.1697 41 1 0.2011 -3.2355 -8.5862 42 1 1.2494 -2.0122 -9.3429 43 1 0.1397 -1.5452 -8.0319 44 1 3.1592 -3.1750 -8.9511 45 1 3.9156 -2.3921 -7.5431 46 1 3.3459 -4.0744 -7.4262 47 1 1.6088 -3.7576 -2.5917 48 1 3.1407 -2.9049 -2.2821 49 1 1.5877 -2.5822 -0.3904 50 1 0.3530 -1.9357 -1.4978 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172498766.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:23:27 Heat of formation + Delta-G solvation = 25.540954 kcal Electronic energy + Delta-G solvation = -26969.784398 eV Core-core repulsion = 23419.868152 eV Total energy + Delta-G solvation = -3549.916247 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.77549 -38.58235 -37.07477 -34.46919 -32.85420 -31.83178 -31.13861 -30.53168 -29.24824 -28.56981 -26.70918 -25.44117 -25.04793 -23.31230 -22.58206 -21.10608 -20.40371 -19.39759 -18.59904 -16.50490 -16.33621 -16.11877 -15.85516 -15.72562 -14.95512 -14.81114 -14.57208 -14.31924 -14.17257 -14.00088 -13.37196 -13.20047 -13.04231 -12.85173 -12.76035 -12.49002 -12.38829 -12.26273 -12.11722 -11.96528 -11.75276 -11.41256 -11.28825 -11.18734 -10.89700 -10.86205 -10.74746 -10.44287 -10.43386 -10.20344 -9.92754 -9.79911 -9.51306 -9.14398 -8.85681 -8.20834 -8.08537 -7.64630 -5.86567 -3.87552 2.13274 2.34834 3.39313 3.43399 3.46192 3.52361 4.11164 4.35319 4.48447 4.55428 4.57089 4.65751 4.87833 4.93196 4.96262 5.09110 5.22063 5.26977 5.29466 5.36435 5.40908 5.48616 5.49909 5.53356 5.59307 5.63141 5.74578 5.80359 5.82387 5.92098 5.97411 6.11375 6.16418 6.24565 6.34886 6.38787 6.41981 6.50904 6.56186 6.75199 6.95266 7.00909 7.34764 7.64253 7.68008 7.77619 7.87818 8.11133 8.25889 8.60092 9.21469 9.74791 11.24329 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.019433 B = 0.003108 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.499533 B = 9006.131989 C = 9895.473001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.083 3.917 3 H 0.076 0.924 4 C -0.102 4.102 5 C 0.031 3.969 6 C -0.518 4.518 7 H 0.050 0.950 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.886 3.114 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.279 1.279 14 N -0.518 5.518 15 C 0.061 3.939 16 C -0.118 4.118 17 C 0.082 3.918 18 C -0.137 4.137 19 C 0.319 3.681 20 N -0.596 5.596 21 C 0.098 3.902 22 C 0.098 3.902 23 N -0.380 5.380 24 O -0.183 6.183 25 C -0.103 4.103 26 C 0.057 3.943 27 H 0.047 0.953 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.032 0.968 33 H 0.008 0.992 34 H 0.258 0.742 35 H 0.072 0.928 36 H 0.036 0.964 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.050 0.950 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.071 0.929 48 H 0.090 0.910 49 H 0.086 0.914 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.084 -3.314 -21.430 23.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.025 4.025 3 H 0.094 0.906 4 C -0.140 4.140 5 C -0.006 4.006 6 C -0.557 4.557 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.714 3.286 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.242 5.242 15 C -0.068 4.068 16 C -0.156 4.156 17 C 0.041 3.959 18 C -0.177 4.177 19 C 0.039 3.961 20 N -0.321 5.321 21 C -0.044 4.044 22 C -0.045 4.045 23 N -0.141 5.141 24 O -0.199 6.199 25 C -0.142 4.142 26 C -0.071 4.071 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.027 0.973 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.054 0.946 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.089 0.911 48 H 0.109 0.891 49 H 0.104 0.896 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.495 -3.025 -21.530 23.342 hybrid contribution 0.500 -0.624 0.880 1.189 sum -7.995 -3.649 -20.650 22.442 Atomic orbital electron populations 1.22496 0.98792 1.01760 1.01228 1.21836 0.91152 0.98407 0.91098 0.90618 1.21716 1.00741 0.98288 0.93221 1.18981 0.88081 0.96645 0.96883 1.21325 0.91663 1.34435 1.08236 0.93218 1.24987 0.97145 0.95826 0.96411 1.69971 1.02025 1.44788 1.36668 0.86764 0.77551 0.80292 0.83969 1.20413 1.21436 1.20431 1.62043 1.58395 1.02123 1.01610 1.21957 0.98262 0.96849 0.89686 1.21797 1.01435 0.94132 0.98268 1.22330 0.83278 0.95881 0.94428 1.23012 1.00188 1.03611 0.90896 1.22772 0.94187 0.92563 0.86562 1.45215 1.14301 1.72006 1.00546 1.21694 0.90462 1.01274 0.90993 1.21731 0.82737 0.99303 1.00719 1.78508 1.18819 1.25827 0.90924 1.91156 1.22748 1.94176 1.11774 1.21590 1.03083 0.97558 0.91962 1.22061 0.96011 0.90628 0.98429 0.93430 0.92566 0.92475 0.93399 0.93385 0.94982 0.97347 0.93241 0.90907 0.94592 0.89714 0.91862 0.87991 0.88211 0.93098 0.91227 0.90718 0.90040 0.92210 0.92298 0.91086 0.89132 0.89590 0.94501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.81 8.44 37.15 0.31 -2.50 16 2 C 0.08 1.48 2.31 -67.72 -0.16 1.32 16 3 H 0.08 1.38 7.96 -51.93 -0.41 0.97 16 4 C -0.10 -2.14 4.55 -26.73 -0.12 -2.26 16 5 C 0.03 0.82 4.85 -27.88 -0.14 0.68 16 6 C -0.52 -14.92 9.11 -34.44 -0.31 -15.24 16 7 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -27.28 13.29 55.43 0.74 -26.55 16 10 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 N -0.52 -8.90 3.99 -226.47 -0.90 -9.80 16 15 C 0.06 0.93 5.07 -3.75 -0.02 0.91 16 16 C -0.12 -1.63 5.08 -27.00 -0.14 -1.77 16 17 C 0.08 1.10 0.76 -90.73 -0.07 1.03 16 18 C -0.14 -1.47 5.46 -26.70 -0.15 -1.62 16 19 C 0.32 3.72 7.74 -153.55 -1.19 2.53 16 20 N -0.60 -5.15 3.35 -186.24 -0.62 -5.78 16 21 C 0.10 0.70 10.53 59.85 0.63 1.33 16 22 C 0.10 0.51 10.17 59.84 0.61 1.12 16 23 N -0.38 -5.61 11.80 33.28 0.39 -5.22 16 24 O -0.18 -2.93 11.46 -11.47 -0.13 -3.06 16 25 C -0.10 -1.46 5.05 -27.00 -0.14 -1.59 16 26 C 0.06 0.91 4.44 -3.75 -0.02 0.89 16 27 H 0.05 0.69 6.87 -51.93 -0.36 0.34 16 28 H 0.06 0.85 6.47 -51.93 -0.34 0.52 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 1.00 6.28 -51.93 -0.33 0.67 16 32 H 0.03 0.89 7.72 -51.92 -0.40 0.49 16 33 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.07 1.09 7.99 -51.93 -0.41 0.68 16 36 H 0.04 0.57 6.82 -51.93 -0.35 0.22 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.10 0.99 7.88 -51.93 -0.41 0.58 16 40 H 0.10 0.91 7.86 -51.93 -0.41 0.50 16 41 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.31 7.92 -51.93 -0.41 -0.10 16 43 H 0.07 0.65 7.64 -51.93 -0.40 0.25 16 44 H 0.08 0.25 7.79 -51.93 -0.40 -0.15 16 45 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 48 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 49 H 0.09 1.48 6.16 -51.93 -0.32 1.16 16 50 H 0.04 0.60 6.49 -51.93 -0.34 0.26 16 LS Contribution 383.10 15.07 5.77 5.77 Total: -1.00 -33.44 383.10 -9.82 -43.26 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -9.06 Total: -2.04 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -0.98 Total: -13.59 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: -0.40 Total: -47.34 kcal Atomic # 8 Polarization: -2.93 SS G_CDS: -0.13 Total: -3.06 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.44 -9.82 -43.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172498766.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.801 kcal (2) G-P(sol) polarization free energy of solvation -33.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds