Wall clock time and date at job start Tue Mar 31 2020 10:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34775 * 119.99798 * 2 1 4 4 O 1.21591 * 120.00484 * 359.97438 * 3 2 1 5 5 N 1.34780 * 119.99956 * 180.02562 * 3 2 1 6 6 C 1.46492 * 120.00131 * 180.02562 * 5 3 2 7 7 C 1.53119 * 109.52373 * 204.99913 * 6 5 3 8 8 C 1.53041 * 109.28136 * 182.37673 * 7 6 5 9 9 N 1.46848 * 109.51300 * 59.18239 * 8 7 6 10 10 C 1.46906 * 110.99787 * 174.15868 * 9 8 7 11 11 C 1.53000 * 109.46952 * 294.99755 * 10 9 8 12 12 C 1.52999 * 109.47129 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.47315 * 59.99699 * 12 11 10 14 14 C 1.50701 * 109.46540 * 60.00176 * 13 12 11 15 15 H 1.08006 * 119.99529 * 245.42384 * 14 13 12 16 16 C 1.37875 * 120.00278 * 65.42947 * 14 13 12 17 17 N 1.31512 * 119.99861 * 9.54164 * 16 14 13 18 18 Si 1.86796 * 120.00276 * 189.54390 * 16 14 13 19 19 H 1.48498 * 109.47209 * 94.98613 * 18 16 14 20 20 H 1.48503 * 109.47204 * 214.99430 * 18 16 14 21 21 H 1.48510 * 109.47068 * 334.98908 * 18 16 14 22 22 C 1.52998 * 109.46928 * 300.00366 * 13 12 11 23 23 C 1.52997 * 109.46840 * 174.99922 * 10 9 8 24 24 C 1.46849 * 111.19736 * 298.24096 * 9 8 7 25 25 C 1.53034 * 109.51393 * 61.76188 * 24 9 8 26 26 H 1.08996 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47368 * 300.00474 * 1 2 3 28 28 H 1.09007 * 109.47253 * 60.00057 * 1 2 3 29 29 H 0.96995 * 119.99791 * 179.97438 * 2 1 3 30 30 H 0.96995 * 119.99633 * 359.97438 * 5 3 2 31 31 H 1.09003 * 109.52685 * 325.12157 * 6 5 3 32 32 H 1.08996 * 109.50511 * 62.43119 * 7 6 5 33 33 H 1.09004 * 109.53483 * 302.33214 * 7 6 5 34 34 H 1.09001 * 109.46324 * 179.18913 * 8 7 6 35 35 H 1.09004 * 109.45981 * 299.17334 * 8 7 6 36 36 H 1.09000 * 109.46979 * 54.99920 * 10 9 8 37 37 H 1.08997 * 109.46910 * 300.00010 * 11 10 9 38 38 H 1.08995 * 109.46842 * 60.00137 * 11 10 9 39 39 H 1.09000 * 109.46714 * 300.00111 * 12 11 10 40 40 H 1.08990 * 109.47089 * 180.02562 * 12 11 10 41 41 H 1.08996 * 109.46874 * 180.02562 * 13 12 11 42 42 H 0.97002 * 120.00161 * 179.97438 * 17 16 14 43 43 H 1.08999 * 109.47573 * 299.99265 * 22 13 12 44 44 H 1.09007 * 109.46936 * 179.97438 * 22 13 12 45 45 H 1.09002 * 109.47142 * 299.99365 * 23 10 9 46 46 H 1.08997 * 109.47498 * 59.99699 * 23 10 9 47 47 H 1.09001 * 109.47450 * 301.74338 * 24 9 8 48 48 H 1.08999 * 109.45636 * 181.76795 * 24 9 8 49 49 H 1.09001 * 109.50604 * 180.87304 * 25 24 9 50 50 H 1.08997 * 109.50432 * 60.75265 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 -0.0005 5 7 3.4867 1.1672 -0.0005 6 6 4.2191 2.4359 0.0000 7 6 5.6075 2.2255 -0.6105 8 6 6.3893 3.5399 -0.5531 9 7 6.5102 3.9781 0.8433 10 6 7.3724 5.1626 0.9505 11 6 8.7985 4.7945 0.5362 12 6 9.6967 6.0280 0.6485 13 6 9.6986 6.5276 2.0946 14 6 10.2205 5.4421 3.0003 15 1 9.5690 4.9923 3.7350 16 6 11.5295 5.0232 2.8912 17 7 12.3727 5.6910 2.1344 18 14 12.1055 3.5071 3.8180 19 1 12.0236 2.3216 2.9274 20 1 13.5108 3.6999 4.2578 21 1 11.2399 3.2946 5.0059 22 6 8.2725 6.8957 2.5088 23 6 7.3744 5.6627 2.3964 24 6 5.1910 4.2324 1.4361 25 6 4.3735 2.9387 1.4381 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.9500 -0.8400 0.0004 30 1 3.9716 0.3272 -0.0005 31 1 3.6712 3.1732 -0.5867 32 1 5.5044 1.9084 -1.6482 33 1 6.1411 1.4599 -0.0473 34 1 7.3835 3.3898 -0.9740 35 1 5.8624 4.3013 -1.1283 36 1 6.9948 5.9474 0.2951 37 1 9.1761 4.0097 1.1916 38 1 8.7970 4.4382 -0.4939 39 1 9.3192 6.8131 -0.0067 40 1 10.7125 5.7658 0.3529 41 1 10.3382 7.4066 2.1744 42 1 13.2938 5.3966 2.0579 43 1 7.8950 7.6809 1.8538 44 1 8.2738 7.2513 3.5393 45 1 6.3584 5.9250 2.6916 46 1 7.7520 4.8779 3.0519 47 1 4.6698 4.9904 0.8515 48 1 5.3149 4.5852 2.4600 49 1 3.3887 3.1310 1.8640 50 1 4.8873 2.1844 2.0340 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173341397.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:07:06 Heat of formation + Delta-G solvation = -42.934566 kcal Electronic energy + Delta-G solvation = -26848.125211 eV Core-core repulsion = 23295.239643 eV Total energy + Delta-G solvation = -3552.885568 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.36712 -39.18377 -37.16032 -34.94996 -34.61786 -32.46735 -31.14561 -31.06584 -29.43463 -28.11138 -26.62411 -24.71038 -23.43971 -23.31469 -21.11417 -20.88781 -20.49376 -19.81141 -18.69230 -18.56310 -16.90081 -15.86198 -15.65932 -15.63231 -14.85269 -14.69054 -14.61972 -14.51008 -14.06169 -13.80132 -13.67597 -13.16628 -13.05828 -12.93338 -12.58592 -12.56566 -12.24972 -12.15137 -11.55951 -11.37974 -11.21818 -11.03632 -10.93102 -10.78001 -10.59213 -10.53079 -10.49098 -10.31406 -10.15806 -10.03968 -9.63544 -9.50063 -9.12310 -9.00603 -8.71300 -8.59882 -8.19895 -7.90868 -5.93599 -3.92082 2.51242 3.03421 3.35243 3.42699 3.46005 4.02268 4.18500 4.51633 4.68979 4.86928 4.87678 5.11831 5.22338 5.27246 5.39404 5.42140 5.45963 5.53168 5.57163 5.65705 5.70636 5.77533 5.93100 6.00739 6.06628 6.07753 6.11134 6.15108 6.30503 6.34493 6.42240 6.49353 6.54344 6.58043 6.68364 6.71871 6.74778 6.87552 7.12600 7.21827 7.41553 7.48607 7.52752 7.68104 7.79286 7.81846 7.98697 8.10975 8.41445 8.55746 9.10344 9.69576 11.16044 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.023185 B = 0.002941 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.396334 B = 9517.704598 C = 9937.423663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.754 5.754 3 C 0.701 3.299 4 O -0.590 6.590 5 N -0.740 5.740 6 C 0.163 3.837 7 C -0.121 4.121 8 C 0.057 3.943 9 N -0.532 5.532 10 C 0.096 3.904 11 C -0.092 4.092 12 C -0.101 4.101 13 C 0.042 3.958 14 C -0.498 4.498 15 H 0.056 0.944 16 C 0.062 3.938 17 N -0.892 5.892 18 Si 0.880 3.120 19 H -0.282 1.282 20 H -0.290 1.290 21 H -0.275 1.275 22 C -0.106 4.106 23 C -0.103 4.103 24 C 0.054 3.946 25 C -0.124 4.124 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.397 0.603 30 H 0.395 0.605 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.029 0.971 36 H 0.026 0.974 37 H 0.079 0.921 38 H 0.032 0.968 39 H 0.016 0.984 40 H 0.073 0.927 41 H 0.030 0.970 42 H 0.257 0.743 43 H 0.031 0.969 44 H 0.048 0.952 45 H 0.038 0.962 46 H 0.079 0.921 47 H 0.028 0.972 48 H 0.086 0.914 49 H 0.067 0.933 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.367 -11.453 -6.199 22.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.410 5.410 3 C 0.401 3.599 4 O -0.468 6.468 5 N -0.394 5.394 6 C 0.058 3.942 7 C -0.159 4.159 8 C -0.071 4.071 9 N -0.257 5.257 10 C -0.011 4.011 11 C -0.130 4.130 12 C -0.140 4.140 13 C 0.024 3.976 14 C -0.536 4.536 15 H 0.074 0.926 16 C -0.138 4.138 17 N -0.531 5.531 18 Si 0.709 3.291 19 H -0.208 1.208 20 H -0.216 1.216 21 H -0.200 1.200 22 C -0.144 4.144 23 C -0.140 4.140 24 C -0.075 4.075 25 C -0.163 4.163 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.229 0.771 30 H 0.228 0.772 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.048 0.952 36 H 0.044 0.956 37 H 0.098 0.902 38 H 0.050 0.950 39 H 0.034 0.966 40 H 0.091 0.909 41 H 0.048 0.952 42 H 0.067 0.933 43 H 0.049 0.951 44 H 0.067 0.933 45 H 0.057 0.943 46 H 0.097 0.903 47 H 0.047 0.953 48 H 0.104 0.896 49 H 0.085 0.915 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.560 -10.838 -5.998 22.314 hybrid contribution 0.444 -1.109 -0.019 1.195 sum -18.117 -11.947 -6.017 22.520 Atomic orbital electron populations 1.21371 0.78292 1.01807 1.02264 1.44945 1.07739 1.07207 1.81125 1.16015 0.81964 0.84205 0.77733 1.90934 1.67899 1.30286 1.57702 1.45266 1.04420 1.09877 1.79822 1.20940 0.91610 0.84511 0.97132 1.21866 0.94189 0.99225 1.00665 1.22025 1.00328 0.94876 0.89902 1.62016 1.11740 1.35641 1.16319 1.21641 0.93668 0.88611 0.97216 1.21450 0.92616 1.00449 0.98492 1.21445 0.99301 0.94503 0.98704 1.18698 0.90124 0.96730 0.92084 1.21126 0.95428 1.19158 1.17918 0.92576 1.24924 0.96731 0.96597 0.95574 1.69966 1.04205 1.38465 1.40443 0.86760 0.77846 0.84269 0.80236 1.20810 1.21613 1.19978 1.21546 0.98200 0.95226 0.99450 1.21580 0.97495 0.99406 0.95544 1.22110 0.88937 0.95551 1.00881 1.21981 0.99807 0.98103 0.96413 0.90795 0.92415 0.92466 0.77063 0.77156 0.89871 0.91351 0.90450 0.89637 0.95242 0.95628 0.90217 0.94971 0.96571 0.90881 0.95170 0.93279 0.95059 0.93307 0.94339 0.90272 0.95332 0.89621 0.91467 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.71 10.70 59.85 0.64 1.35 16 2 N -0.75 -5.79 5.72 -72.06 -0.41 -6.20 16 3 C 0.70 8.10 8.54 -86.92 -0.74 7.36 16 4 O -0.59 -9.49 16.00 5.29 0.08 -9.40 16 5 N -0.74 -7.13 5.09 -58.56 -0.30 -7.42 16 6 C 0.16 1.88 2.52 -67.81 -0.17 1.70 16 7 C -0.12 -1.30 5.57 -26.65 -0.15 -1.45 16 8 C 0.06 0.76 5.29 -3.83 -0.02 0.74 16 9 N -0.53 -8.22 4.52 -226.68 -1.03 -9.25 16 10 C 0.10 1.71 1.96 -67.71 -0.13 1.58 16 11 C -0.09 -1.86 4.90 -26.73 -0.13 -1.99 16 12 C -0.10 -2.30 5.29 -26.73 -0.14 -2.44 16 13 C 0.04 1.02 2.45 -91.77 -0.22 0.80 16 14 C -0.50 -13.15 6.63 -34.44 -0.23 -13.38 16 15 H 0.06 1.49 6.54 -52.48 -0.34 1.14 16 16 C 0.06 1.70 5.20 -17.82 -0.09 1.61 16 17 N -0.89 -25.41 12.16 55.43 0.67 -24.73 16 18 Si 0.88 21.19 29.55 -169.99 -5.02 16.16 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.11 -2.19 5.42 -26.75 -0.14 -2.33 16 23 C -0.10 -1.92 4.43 -26.76 -0.12 -2.04 16 24 C 0.05 0.76 5.01 -3.83 -0.02 0.74 16 25 C -0.12 -1.57 5.68 -26.65 -0.15 -1.72 16 26 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 29 H 0.40 1.77 8.84 -40.82 -0.36 1.41 16 30 H 0.39 2.66 8.62 -40.82 -0.35 2.31 16 31 H 0.08 1.13 7.57 -51.93 -0.39 0.74 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 1.18 6.18 -51.93 -0.32 0.86 16 35 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.03 0.46 8.13 -51.93 -0.42 0.04 16 37 H 0.08 1.81 7.21 -51.93 -0.37 1.43 16 38 H 0.03 0.59 6.40 -51.93 -0.33 0.25 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 1.86 6.91 -51.93 -0.36 1.51 16 41 H 0.03 0.82 8.09 -51.93 -0.42 0.40 16 42 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.04 0.64 6.19 -51.93 -0.32 0.32 16 46 H 0.08 1.64 6.52 -51.93 -0.34 1.30 16 47 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.09 1.25 5.83 -51.93 -0.30 0.94 16 49 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 50 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 372.99 15.07 5.62 5.62 Total: -1.00 -31.31 372.99 -11.05 -42.36 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -8.85 Total: 2.33 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -1.83 Total: -9.46 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: -1.06 Total: -47.61 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.08 Total: -9.40 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.31 -11.05 -42.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173341397.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.572 kcal (2) G-P(sol) polarization free energy of solvation -31.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds