Wall clock time and date at job start Tue Mar 31 2020 10:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34775 * 119.99798 * 2 1 4 4 O 1.21591 * 120.00484 * 359.97438 * 3 2 1 5 5 N 1.34780 * 119.99956 * 180.02562 * 3 2 1 6 6 C 1.46492 * 120.00131 * 180.02562 * 5 3 2 7 7 C 1.53119 * 109.52373 * 204.99913 * 6 5 3 8 8 C 1.53041 * 109.28136 * 182.37673 * 7 6 5 9 9 N 1.46848 * 109.51300 * 59.18239 * 8 7 6 10 10 C 1.46906 * 110.99787 * 174.15868 * 9 8 7 11 11 C 1.53000 * 109.46952 * 294.99755 * 10 9 8 12 12 C 1.52999 * 109.47129 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.47315 * 59.99699 * 12 11 10 14 14 C 1.50701 * 109.46540 * 60.00176 * 13 12 11 15 15 H 1.08006 * 119.99529 * 245.42384 * 14 13 12 16 16 C 1.37875 * 120.00278 * 65.42947 * 14 13 12 17 17 N 1.31512 * 119.99861 * 9.54164 * 16 14 13 18 18 Si 1.86796 * 120.00276 * 189.54390 * 16 14 13 19 19 H 1.48498 * 109.47209 * 94.98613 * 18 16 14 20 20 H 1.48503 * 109.47204 * 214.99430 * 18 16 14 21 21 H 1.48510 * 109.47068 * 334.98908 * 18 16 14 22 22 C 1.52998 * 109.46928 * 300.00366 * 13 12 11 23 23 C 1.52997 * 109.46840 * 174.99922 * 10 9 8 24 24 C 1.46849 * 111.19736 * 298.24096 * 9 8 7 25 25 C 1.53034 * 109.51393 * 61.76188 * 24 9 8 26 26 H 1.08996 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47368 * 300.00474 * 1 2 3 28 28 H 1.09007 * 109.47253 * 60.00057 * 1 2 3 29 29 H 0.96995 * 119.99791 * 179.97438 * 2 1 3 30 30 H 0.96995 * 119.99633 * 359.97438 * 5 3 2 31 31 H 1.09003 * 109.52685 * 325.12157 * 6 5 3 32 32 H 1.08996 * 109.50511 * 62.43119 * 7 6 5 33 33 H 1.09004 * 109.53483 * 302.33214 * 7 6 5 34 34 H 1.09001 * 109.46324 * 179.18913 * 8 7 6 35 35 H 1.09004 * 109.45981 * 299.17334 * 8 7 6 36 36 H 1.09000 * 109.46979 * 54.99920 * 10 9 8 37 37 H 1.08997 * 109.46910 * 300.00010 * 11 10 9 38 38 H 1.08995 * 109.46842 * 60.00137 * 11 10 9 39 39 H 1.09000 * 109.46714 * 300.00111 * 12 11 10 40 40 H 1.08990 * 109.47089 * 180.02562 * 12 11 10 41 41 H 1.08996 * 109.46874 * 180.02562 * 13 12 11 42 42 H 0.97002 * 120.00161 * 179.97438 * 17 16 14 43 43 H 1.08999 * 109.47573 * 299.99265 * 22 13 12 44 44 H 1.09007 * 109.46936 * 179.97438 * 22 13 12 45 45 H 1.09002 * 109.47142 * 299.99365 * 23 10 9 46 46 H 1.08997 * 109.47498 * 59.99699 * 23 10 9 47 47 H 1.09001 * 109.47450 * 301.74338 * 24 9 8 48 48 H 1.08999 * 109.45636 * 181.76795 * 24 9 8 49 49 H 1.09001 * 109.50604 * 180.87304 * 25 24 9 50 50 H 1.08997 * 109.50432 * 60.75265 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 -0.0005 5 7 3.4867 1.1672 -0.0005 6 6 4.2191 2.4359 0.0000 7 6 5.6075 2.2255 -0.6105 8 6 6.3893 3.5399 -0.5531 9 7 6.5102 3.9781 0.8433 10 6 7.3724 5.1626 0.9505 11 6 8.7985 4.7945 0.5362 12 6 9.6967 6.0280 0.6485 13 6 9.6986 6.5276 2.0946 14 6 10.2205 5.4421 3.0003 15 1 9.5690 4.9923 3.7350 16 6 11.5295 5.0232 2.8912 17 7 12.3727 5.6910 2.1344 18 14 12.1055 3.5071 3.8180 19 1 12.0236 2.3216 2.9274 20 1 13.5108 3.6999 4.2578 21 1 11.2399 3.2946 5.0059 22 6 8.2725 6.8957 2.5088 23 6 7.3744 5.6627 2.3964 24 6 5.1910 4.2324 1.4361 25 6 4.3735 2.9387 1.4381 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.9500 -0.8400 0.0004 30 1 3.9716 0.3272 -0.0005 31 1 3.6712 3.1732 -0.5867 32 1 5.5044 1.9084 -1.6482 33 1 6.1411 1.4599 -0.0473 34 1 7.3835 3.3898 -0.9740 35 1 5.8624 4.3013 -1.1283 36 1 6.9948 5.9474 0.2951 37 1 9.1761 4.0097 1.1916 38 1 8.7970 4.4382 -0.4939 39 1 9.3192 6.8131 -0.0067 40 1 10.7125 5.7658 0.3529 41 1 10.3382 7.4066 2.1744 42 1 13.2938 5.3966 2.0579 43 1 7.8950 7.6809 1.8538 44 1 8.2738 7.2513 3.5393 45 1 6.3584 5.9250 2.6916 46 1 7.7520 4.8779 3.0519 47 1 4.6698 4.9904 0.8515 48 1 5.3149 4.5852 2.4600 49 1 3.3887 3.1310 1.8640 50 1 4.8873 2.1844 2.0340 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173341397.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:07:05 Heat of formation + Delta-G solvation = -64.747508 kcal Electronic energy + Delta-G solvation = -26849.071092 eV Core-core repulsion = 23295.239643 eV Total energy + Delta-G solvation = -3553.831448 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.30446 -40.42650 -38.54590 -36.06240 -35.51456 -34.22500 -32.45989 -32.27815 -30.96397 -29.56064 -27.44815 -26.58253 -24.63764 -24.46253 -22.48105 -22.06312 -21.74611 -20.92321 -20.44280 -19.42592 -17.90542 -17.64137 -16.97126 -16.60442 -16.44985 -15.79621 -15.70415 -15.54096 -15.34483 -15.06473 -14.84073 -14.65979 -14.38560 -14.15533 -13.87858 -13.70325 -13.42193 -13.32978 -13.01621 -12.90275 -12.76760 -12.44186 -12.41167 -12.24230 -12.11442 -12.09344 -11.79342 -11.73038 -11.50415 -11.43138 -11.26538 -10.94211 -10.58033 -10.44352 -10.30895 -10.25144 -9.74873 -9.14254 -8.03639 -6.07092 1.42879 1.45348 1.53894 1.77118 2.15865 2.49817 2.96127 3.28496 3.36812 3.74727 3.85945 4.07370 4.09727 4.18437 4.29910 4.44150 4.45791 4.46453 4.54444 4.63646 4.65521 4.67180 4.72401 4.82462 4.88209 4.89935 4.94433 4.96740 4.98853 4.99184 5.06085 5.13775 5.16247 5.24669 5.31454 5.40308 5.51302 5.56212 5.57795 5.70077 5.73504 5.77005 5.99630 6.04077 6.13485 6.30061 6.32471 6.50404 7.02602 7.13513 7.57240 7.61051 9.05881 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.023185 B = 0.002941 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.396334 B = 9517.704598 C = 9937.423663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.740 5.740 3 C 0.694 3.306 4 O -0.640 6.640 5 N -0.727 5.727 6 C 0.170 3.830 7 C -0.109 4.109 8 C 0.053 3.947 9 N -0.538 5.538 10 C 0.105 3.895 11 C -0.081 4.081 12 C -0.095 4.095 13 C 0.037 3.963 14 C -0.500 4.500 15 H 0.053 0.947 16 C 0.014 3.986 17 N -0.924 5.924 18 Si 0.938 3.062 19 H -0.277 1.277 20 H -0.291 1.291 21 H -0.269 1.269 22 C -0.102 4.102 23 C -0.095 4.095 24 C 0.056 3.944 25 C -0.115 4.115 26 H 0.113 0.887 27 H 0.043 0.957 28 H 0.045 0.955 29 H 0.415 0.585 30 H 0.412 0.588 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.031 0.969 36 H 0.030 0.970 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.029 0.971 40 H 0.039 0.961 41 H -0.009 1.009 42 H 0.256 0.744 43 H 0.047 0.953 44 H 0.046 0.954 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.027 0.973 48 H 0.081 0.919 49 H 0.057 0.943 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.994 -13.759 -6.600 25.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.396 5.396 3 C 0.393 3.607 4 O -0.522 6.522 5 N -0.382 5.382 6 C 0.064 3.936 7 C -0.147 4.147 8 C -0.075 4.075 9 N -0.263 5.263 10 C -0.003 4.003 11 C -0.119 4.119 12 C -0.134 4.134 13 C 0.018 3.982 14 C -0.538 4.538 15 H 0.072 0.928 16 C -0.183 4.183 17 N -0.564 5.564 18 Si 0.765 3.235 19 H -0.203 1.203 20 H -0.217 1.217 21 H -0.194 1.194 22 C -0.140 4.140 23 C -0.133 4.133 24 C -0.072 4.072 25 C -0.154 4.154 26 H 0.131 0.869 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.251 0.749 30 H 0.249 0.751 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.049 0.951 36 H 0.048 0.952 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.048 0.952 40 H 0.058 0.942 41 H 0.009 0.991 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.045 0.955 48 H 0.099 0.901 49 H 0.075 0.925 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.188 -13.216 -6.395 24.963 hybrid contribution 0.920 -0.367 0.102 0.996 sum -19.268 -13.583 -6.293 24.400 Atomic orbital electron populations 1.21514 0.77516 1.03993 1.01046 1.44859 1.08246 1.06871 1.79614 1.16281 0.82344 0.84485 0.77541 1.90902 1.68950 1.32373 1.59979 1.45027 1.03927 1.10060 1.79205 1.20728 0.91962 0.84925 0.96002 1.21768 0.93004 0.97881 1.02038 1.22118 1.00660 0.96217 0.88498 1.61963 1.12124 1.34232 1.17945 1.21403 0.92756 0.89715 0.96433 1.21268 0.93463 0.98090 0.99082 1.21302 0.98236 0.96143 0.97732 1.18693 0.91727 0.94712 0.93038 1.21365 0.95393 1.19240 1.17779 0.92849 1.25602 0.97075 0.99026 0.96626 1.70092 1.04364 1.39894 1.42063 0.85841 0.77187 0.81199 0.79260 1.20276 1.21712 1.19353 1.21456 0.96260 0.96699 0.99557 1.21476 0.98149 0.97703 0.95934 1.22097 0.88366 0.96392 1.00385 1.21868 0.98850 0.97412 0.97243 0.86881 0.93775 0.93618 0.74904 0.75137 0.91875 0.89229 0.89770 0.89963 0.95061 0.95161 0.92921 0.93094 0.95228 0.94231 0.99072 0.93464 0.93471 0.93560 0.91840 0.92325 0.95460 0.90111 0.92460 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.17 10.70 127.77 1.37 2.54 16 2 N -0.74 -9.61 5.72 -500.17 -2.86 -12.47 16 3 C 0.69 14.92 8.54 179.05 1.53 16.45 16 4 O -0.64 -20.32 16.00 -4.00 -0.06 -20.38 16 5 N -0.73 -12.30 5.09 -457.43 -2.33 -14.63 16 6 C 0.17 3.57 2.52 45.07 0.11 3.68 16 7 C -0.11 -2.02 5.57 30.65 0.17 -1.85 16 8 C 0.05 1.30 5.29 86.33 0.46 1.76 16 9 N -0.54 -15.63 4.52 -871.09 -3.94 -19.57 16 10 C 0.10 3.58 1.96 44.91 0.09 3.67 16 11 C -0.08 -3.22 4.90 30.59 0.15 -3.07 16 12 C -0.10 -4.40 5.29 30.60 0.16 -4.24 16 13 C 0.04 1.82 2.45 -11.54 -0.03 1.80 16 14 C -0.50 -26.79 6.63 25.60 0.17 -26.62 16 15 H 0.05 2.85 6.54 -2.91 -0.02 2.83 16 16 C 0.01 0.79 5.20 84.65 0.44 1.23 16 17 N -0.92 -54.04 12.16 21.45 0.26 -53.78 16 18 Si 0.94 43.84 29.55 68.60 2.03 45.86 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 C -0.10 -4.15 5.42 30.58 0.17 -3.98 16 23 C -0.10 -3.45 4.43 30.58 0.14 -3.32 16 24 C 0.06 1.49 5.01 86.32 0.43 1.92 16 25 C -0.11 -2.71 5.68 30.65 0.17 -2.53 16 26 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.05 0.63 8.14 -2.38 -0.02 0.62 16 29 H 0.41 2.34 8.84 -92.71 -0.82 1.52 16 30 H 0.41 4.20 8.62 -92.71 -0.80 3.40 16 31 H 0.06 1.64 7.57 -2.39 -0.02 1.62 16 32 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 2.07 6.18 -2.39 -0.01 2.05 16 35 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.03 1.03 8.13 -2.39 -0.02 1.01 16 37 H 0.05 2.38 7.21 -2.39 -0.02 2.36 16 38 H 0.05 1.80 6.40 -2.39 -0.02 1.79 16 39 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.04 2.07 6.91 -2.39 -0.02 2.05 16 41 H -0.01 -0.51 8.09 -2.39 -0.02 -0.53 16 42 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 43 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 45 H 0.06 2.00 6.19 -2.39 -0.01 1.98 16 46 H 0.06 2.38 6.52 -2.39 -0.02 2.37 16 47 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.08 2.21 5.83 -2.39 -0.01 2.20 16 49 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -69.62 372.99 -2.06 -71.68 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -0.69 Total: 15.84 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: 5.53 Total: -12.56 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -8.87 Total: -100.44 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.06 Total: -20.38 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -69.62 -2.06 -71.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173341397.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.931 kcal (2) G-P(sol) polarization free energy of solvation -69.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds