Wall clock time and date at job start Tue Mar 31 2020 09:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.47197 * 2 1 4 4 C 1.46902 * 110.99943 * 297.55753 * 3 2 1 5 5 C 1.53001 * 109.47457 * 288.26700 * 4 3 2 6 6 C 1.46903 * 110.99905 * 61.50661 * 3 2 1 7 7 C 1.50707 * 109.46660 * 66.04948 * 6 3 2 8 8 O 1.21276 * 120.00033 * 359.97438 * 7 6 3 9 9 N 1.34772 * 119.99861 * 179.97438 * 7 6 3 10 10 C 1.46497 * 120.00293 * 179.97438 * 9 7 6 11 11 H 1.09009 * 112.88323 * 26.84318 * 10 9 7 12 12 C 1.53946 * 113.66602 * 255.50098 * 10 9 7 13 13 C 1.53953 * 87.29447 * 220.69817 * 12 10 9 14 14 H 1.09004 * 113.66356 * 139.30009 * 13 12 10 15 15 N 1.46500 * 113.65776 * 270.25796 * 13 12 10 16 16 C 1.36941 * 120.00194 * 253.70744 * 15 13 12 17 17 H 1.07998 * 119.99795 * 0.28127 * 16 15 13 18 18 C 1.38814 * 120.00014 * 180.27866 * 16 15 13 19 19 N 1.31615 * 119.99652 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00002 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47204 * 89.99793 * 20 18 16 22 22 H 1.48501 * 109.46848 * 209.99898 * 20 18 16 23 23 H 1.48508 * 109.46894 * 329.99723 * 20 18 16 24 24 C 1.52905 * 86.88430 * 24.78028 * 13 12 10 25 25 C 1.52913 * 121.13940 * 209.33928 * 24 13 12 26 26 C 1.53960 * 86.77825 * 209.37365 * 25 24 13 27 27 C 1.52909 * 121.14173 * 100.77092 * 24 13 12 28 28 H 1.08994 * 109.47210 * 301.26613 * 1 2 3 29 29 H 1.09003 * 109.47125 * 61.26731 * 1 2 3 30 30 H 1.09000 * 109.47055 * 181.26026 * 1 2 3 31 31 H 1.08998 * 109.47245 * 240.00475 * 2 1 3 32 32 H 1.09000 * 109.47083 * 120.00037 * 2 1 3 33 33 H 1.09001 * 109.47197 * 48.26896 * 4 3 2 34 34 H 1.09005 * 109.46981 * 168.26586 * 4 3 2 35 35 H 1.08995 * 109.46945 * 299.88252 * 5 4 3 36 36 H 1.09001 * 109.46668 * 59.87844 * 5 4 3 37 37 H 1.08996 * 109.47134 * 179.87612 * 5 4 3 38 38 H 1.08997 * 109.47179 * 306.05493 * 6 3 2 39 39 H 1.09001 * 109.47423 * 186.04840 * 6 3 2 40 40 H 0.97003 * 119.99970 * 0.02562 * 9 7 6 41 41 H 1.08999 * 113.58393 * 106.09118 * 12 10 9 42 42 H 1.09004 * 113.65110 * 335.31075 * 12 10 9 43 43 H 0.97002 * 120.00108 * 73.99356 * 15 13 12 44 44 H 0.97007 * 119.99255 * 179.97438 * 19 18 16 45 45 H 1.09002 * 113.66089 * 323.84047 * 25 24 13 46 46 H 1.08991 * 113.66571 * 94.90123 * 25 24 13 47 47 H 1.08997 * 113.57717 * 270.13002 * 26 25 24 48 48 H 1.08997 * 113.57678 * 139.33798 * 26 25 24 49 49 H 1.08998 * 113.66176 * 265.09771 * 27 24 13 50 50 H 1.08999 * 113.66089 * 36.14899 * 27 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5970 2.0928 -1.2159 5 6 2.3837 1.5608 -2.4154 6 6 1.5783 2.0994 1.2053 7 6 2.2309 1.4884 2.4186 8 8 2.9886 0.5500 2.2917 9 7 1.9725 1.9848 3.6446 10 6 2.6065 1.3906 4.8241 11 1 3.5607 0.9146 4.5979 12 6 1.6583 0.5089 5.6570 13 6 2.3041 1.1260 6.9109 14 1 1.5905 1.3566 7.7021 15 7 3.4722 0.3863 7.3952 16 6 3.3785 -0.3751 8.5296 17 1 2.4423 -0.4338 9.0647 18 6 4.4870 -1.0714 8.9916 19 7 4.3968 -1.8035 10.0816 20 14 6.1065 -0.9692 8.0664 21 1 6.9079 0.1638 8.5948 22 1 6.8606 -2.2357 8.2472 23 1 5.8385 -0.7546 6.6215 24 6 2.6586 2.3280 6.0348 25 6 3.8944 3.1807 6.3248 26 6 3.1206 4.3580 5.7038 27 6 1.8277 3.6109 6.0784 28 1 -0.3633 0.5333 0.8784 29 1 -0.3633 0.4940 -0.9012 30 1 -0.3633 -1.0274 0.0226 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.5316 1.9303 -1.3791 34 1 1.7882 3.1597 -1.1002 35 1 3.4489 1.7253 -2.2531 36 1 2.1942 0.4935 -2.5297 37 1 2.0685 2.0845 -3.3178 38 1 0.4950 2.0216 1.2976 39 1 1.8622 3.1491 1.1300 40 1 1.3662 2.7352 3.7462 41 1 1.8485 -0.5589 5.5492 42 1 0.6055 0.7650 5.5378 43 1 4.3131 0.4391 6.9146 44 1 5.1713 -2.2904 10.4042 45 1 4.1005 3.3049 7.3879 46 1 4.7739 2.8851 5.7529 47 1 3.2698 4.4593 4.6289 48 1 3.2522 5.2976 6.2403 49 1 1.0564 3.6588 5.3098 50 1 1.4531 3.8558 7.0723 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203514471.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:39:54 Heat of formation + Delta-G solvation = 33.187258 kcal Electronic energy + Delta-G solvation = -26884.161243 eV Core-core repulsion = 23334.576565 eV Total energy + Delta-G solvation = -3549.584678 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.78773 -39.52783 -37.55301 -35.22141 -34.07952 -32.45810 -31.67537 -30.66777 -29.99673 -26.71126 -25.68094 -24.52928 -24.21892 -23.90788 -22.46300 -20.66513 -20.18607 -20.00204 -18.31325 -17.51756 -16.83139 -16.48543 -16.33893 -15.64707 -15.32414 -14.96949 -14.86387 -14.50163 -14.03268 -13.87264 -13.33525 -13.07312 -12.93700 -12.79946 -12.54177 -12.40121 -12.35666 -12.21187 -12.17792 -11.98505 -11.95508 -11.69018 -11.67053 -11.26050 -11.08523 -10.90342 -10.81190 -10.70238 -10.23516 -10.14570 -9.94801 -9.69034 -9.60902 -9.43274 -8.86925 -8.71528 -8.44435 -7.27748 -5.78423 -3.14380 2.73250 3.08390 3.39595 3.44685 3.47696 3.83157 4.57904 4.59057 4.63072 4.66154 4.71976 4.81928 4.83522 4.95794 5.00780 5.01622 5.06555 5.15175 5.20872 5.23421 5.29838 5.37138 5.42901 5.53662 5.58209 5.65437 5.72320 5.75608 5.82815 5.84129 5.89671 5.91063 5.94455 5.98492 6.12988 6.18337 6.24657 6.34216 6.53116 6.58132 6.62289 6.72639 6.76243 6.87658 6.96290 7.64980 7.98630 8.38020 8.41195 9.19016 9.91576 10.10535 11.39542 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.016389 B = 0.003495 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.009485 B = 8008.546005 C = 8700.494123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.039 3.961 3 N -0.518 5.518 4 C 0.045 3.955 5 C -0.146 4.146 6 C 0.030 3.970 7 C 0.510 3.490 8 O -0.521 6.521 9 N -0.719 5.719 10 C 0.154 3.846 11 H 0.110 0.890 12 C -0.181 4.181 13 C 0.192 3.808 14 H 0.075 0.925 15 N -0.726 5.726 16 C -0.246 4.246 17 H 0.092 0.908 18 C 0.008 3.992 19 N -0.932 5.932 20 Si 0.880 3.120 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.275 1.275 24 C -0.130 4.130 25 C -0.120 4.120 26 C -0.140 4.140 27 C -0.108 4.108 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.040 0.960 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.099 0.901 40 H 0.395 0.605 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.363 0.637 44 H 0.260 0.740 45 H 0.089 0.911 46 H 0.062 0.938 47 H 0.073 0.927 48 H 0.063 0.937 49 H 0.060 0.940 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.346 13.352 -21.022 26.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.088 4.088 3 N -0.241 5.241 4 C -0.083 4.083 5 C -0.204 4.204 6 C -0.101 4.101 7 C 0.295 3.705 8 O -0.396 6.396 9 N -0.371 5.371 10 C 0.049 3.951 11 H 0.128 0.872 12 C -0.223 4.223 13 C 0.079 3.921 14 H 0.093 0.907 15 N -0.365 5.365 16 C -0.376 4.376 17 H 0.110 0.890 18 C -0.188 4.188 19 N -0.579 5.579 20 Si 0.710 3.290 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.201 1.201 24 C -0.133 4.133 25 C -0.157 4.157 26 C -0.177 4.177 27 C -0.146 4.146 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.116 0.884 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.117 0.883 40 H 0.230 0.770 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.197 0.803 44 H 0.070 0.930 45 H 0.108 0.892 46 H 0.080 0.920 47 H 0.092 0.908 48 H 0.082 0.918 49 H 0.078 0.922 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.307 12.499 -20.881 25.715 hybrid contribution -0.028 0.347 -0.604 0.697 sum -8.336 12.847 -21.484 26.384 Atomic orbital electron populations 1.22449 0.98754 1.02613 1.01453 1.22389 0.92133 0.89706 1.04583 1.61935 1.59539 1.02413 1.00248 1.22171 0.97710 0.98205 0.90203 1.21750 1.01236 1.01175 0.96240 1.22046 0.98745 0.99204 0.90096 1.20468 0.81994 0.83849 0.84148 1.90688 1.35529 1.27566 1.85774 1.46083 1.48524 1.36314 1.06195 1.22288 0.97783 0.93913 0.81086 0.87205 1.24256 0.98059 1.00662 0.99319 1.20728 0.90047 0.88994 0.92331 0.90694 1.42441 1.08195 1.55728 1.30139 1.19074 0.98376 1.20327 0.99778 0.89036 1.24648 0.97584 0.99275 0.97280 1.69698 1.30092 1.34472 1.23630 0.86618 0.85178 0.77362 0.79890 1.20964 1.21618 1.20106 1.23571 0.97977 0.94399 0.97324 1.22610 0.96415 0.95194 1.01530 1.22852 0.96892 0.97590 1.00402 1.22503 0.95883 0.94498 1.01678 0.92682 0.92625 0.91822 0.90608 0.88362 0.94222 0.91051 0.91783 0.92617 0.92452 0.91686 0.88264 0.77021 0.90808 0.90962 0.80341 0.92992 0.89250 0.91968 0.90802 0.91800 0.92184 0.89379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.72 9.28 37.16 0.34 -1.38 16 2 C 0.04 0.43 5.57 -3.82 -0.02 0.41 16 3 N -0.52 -5.52 4.41 -236.06 -1.04 -6.56 16 4 C 0.04 0.36 5.55 -3.82 -0.02 0.34 16 5 C -0.15 -1.11 9.96 37.16 0.37 -0.74 16 6 C 0.03 0.29 5.23 -4.97 -0.03 0.27 16 7 C 0.51 6.86 7.54 -10.98 -0.08 6.77 16 8 O -0.52 -9.37 13.96 5.56 0.08 -9.30 16 9 N -0.72 -8.73 5.31 -53.22 -0.28 -9.01 16 10 C 0.15 2.38 4.01 -67.33 -0.27 2.11 16 11 H 0.11 2.08 7.54 -51.92 -0.39 1.69 16 12 C -0.18 -3.05 7.68 -25.75 -0.20 -3.24 16 13 C 0.19 3.55 4.35 -67.48 -0.29 3.26 16 14 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 15 N -0.73 -16.89 4.91 -52.99 -0.26 -17.15 16 16 C -0.25 -6.85 10.45 -15.06 -0.16 -7.01 16 17 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 18 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 19 N -0.93 -29.23 13.97 55.49 0.78 -28.46 16 20 Si 0.88 22.42 27.74 -169.99 -4.71 17.70 16 21 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 23 H -0.28 -6.76 6.52 56.52 0.37 -6.40 16 24 C -0.13 -1.91 0.92 -154.56 -0.14 -2.05 16 25 C -0.12 -1.75 7.46 -26.28 -0.20 -1.94 16 26 C -0.14 -1.56 8.08 -25.75 -0.21 -1.77 16 27 C -0.11 -1.20 7.46 -26.29 -0.20 -1.40 16 28 H 0.05 0.50 6.24 -51.93 -0.32 0.17 16 29 H 0.05 0.43 6.29 -51.93 -0.33 0.10 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.78 6.60 -51.93 -0.34 0.44 16 32 H 0.10 1.39 5.86 -51.93 -0.30 1.08 16 33 H 0.04 0.29 5.89 -51.93 -0.31 -0.02 16 34 H 0.07 0.50 7.81 -51.93 -0.41 0.09 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.44 6.71 -51.93 -0.35 0.09 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.53 6.02 -51.93 -0.31 0.21 16 39 H 0.10 0.76 7.86 -51.93 -0.41 0.36 16 40 H 0.39 3.62 6.69 -40.82 -0.27 3.35 16 41 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.36 8.53 5.64 -40.82 -0.23 8.30 16 44 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 45 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 46 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16 50 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 381.55 15.07 5.75 5.75 Total: -1.00 -32.74 381.55 -9.44 -42.18 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -8.55 Total: 11.08 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -1.19 Total: -6.23 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: -0.81 Total: -61.18 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.08 Total: -9.30 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.71 Total: 17.70 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.74 -9.44 -42.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203514471.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.366 kcal (2) G-P(sol) polarization free energy of solvation -32.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds