Wall clock time and date at job start Tue Mar 31 2020 09:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.47197 * 2 1 4 4 C 1.46902 * 110.99943 * 297.55753 * 3 2 1 5 5 C 1.53001 * 109.47457 * 288.26700 * 4 3 2 6 6 C 1.46903 * 110.99905 * 61.50661 * 3 2 1 7 7 C 1.50707 * 109.46660 * 66.04948 * 6 3 2 8 8 O 1.21276 * 120.00033 * 359.97438 * 7 6 3 9 9 N 1.34772 * 119.99861 * 179.97438 * 7 6 3 10 10 C 1.46497 * 120.00293 * 179.97438 * 9 7 6 11 11 H 1.09009 * 112.88323 * 26.84318 * 10 9 7 12 12 C 1.53946 * 113.66602 * 255.50098 * 10 9 7 13 13 C 1.53953 * 87.29447 * 220.69817 * 12 10 9 14 14 H 1.09004 * 113.66356 * 139.30009 * 13 12 10 15 15 N 1.46500 * 113.65776 * 270.25796 * 13 12 10 16 16 C 1.36941 * 120.00194 * 253.70744 * 15 13 12 17 17 H 1.07998 * 119.99795 * 0.28127 * 16 15 13 18 18 C 1.38814 * 120.00014 * 180.27866 * 16 15 13 19 19 N 1.31615 * 119.99652 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00002 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47204 * 89.99793 * 20 18 16 22 22 H 1.48501 * 109.46848 * 209.99898 * 20 18 16 23 23 H 1.48508 * 109.46894 * 329.99723 * 20 18 16 24 24 C 1.52905 * 86.88430 * 24.78028 * 13 12 10 25 25 C 1.52913 * 121.13940 * 209.33928 * 24 13 12 26 26 C 1.53960 * 86.77825 * 209.37365 * 25 24 13 27 27 C 1.52909 * 121.14173 * 100.77092 * 24 13 12 28 28 H 1.08994 * 109.47210 * 301.26613 * 1 2 3 29 29 H 1.09003 * 109.47125 * 61.26731 * 1 2 3 30 30 H 1.09000 * 109.47055 * 181.26026 * 1 2 3 31 31 H 1.08998 * 109.47245 * 240.00475 * 2 1 3 32 32 H 1.09000 * 109.47083 * 120.00037 * 2 1 3 33 33 H 1.09001 * 109.47197 * 48.26896 * 4 3 2 34 34 H 1.09005 * 109.46981 * 168.26586 * 4 3 2 35 35 H 1.08995 * 109.46945 * 299.88252 * 5 4 3 36 36 H 1.09001 * 109.46668 * 59.87844 * 5 4 3 37 37 H 1.08996 * 109.47134 * 179.87612 * 5 4 3 38 38 H 1.08997 * 109.47179 * 306.05493 * 6 3 2 39 39 H 1.09001 * 109.47423 * 186.04840 * 6 3 2 40 40 H 0.97003 * 119.99970 * 0.02562 * 9 7 6 41 41 H 1.08999 * 113.58393 * 106.09118 * 12 10 9 42 42 H 1.09004 * 113.65110 * 335.31075 * 12 10 9 43 43 H 0.97002 * 120.00108 * 73.99356 * 15 13 12 44 44 H 0.97007 * 119.99255 * 179.97438 * 19 18 16 45 45 H 1.09002 * 113.66089 * 323.84047 * 25 24 13 46 46 H 1.08991 * 113.66571 * 94.90123 * 25 24 13 47 47 H 1.08997 * 113.57717 * 270.13002 * 26 25 24 48 48 H 1.08997 * 113.57678 * 139.33798 * 26 25 24 49 49 H 1.08998 * 113.66176 * 265.09771 * 27 24 13 50 50 H 1.08999 * 113.66089 * 36.14899 * 27 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5970 2.0928 -1.2159 5 6 2.3837 1.5608 -2.4154 6 6 1.5783 2.0994 1.2053 7 6 2.2309 1.4884 2.4186 8 8 2.9886 0.5500 2.2917 9 7 1.9725 1.9848 3.6446 10 6 2.6065 1.3906 4.8241 11 1 3.5607 0.9146 4.5979 12 6 1.6583 0.5089 5.6570 13 6 2.3041 1.1260 6.9109 14 1 1.5905 1.3566 7.7021 15 7 3.4722 0.3863 7.3952 16 6 3.3785 -0.3751 8.5296 17 1 2.4423 -0.4338 9.0647 18 6 4.4870 -1.0714 8.9916 19 7 4.3968 -1.8035 10.0816 20 14 6.1065 -0.9692 8.0664 21 1 6.9079 0.1638 8.5948 22 1 6.8606 -2.2357 8.2472 23 1 5.8385 -0.7546 6.6215 24 6 2.6586 2.3280 6.0348 25 6 3.8944 3.1807 6.3248 26 6 3.1206 4.3580 5.7038 27 6 1.8277 3.6109 6.0784 28 1 -0.3633 0.5333 0.8784 29 1 -0.3633 0.4940 -0.9012 30 1 -0.3633 -1.0274 0.0226 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.5316 1.9303 -1.3791 34 1 1.7882 3.1597 -1.1002 35 1 3.4489 1.7253 -2.2531 36 1 2.1942 0.4935 -2.5297 37 1 2.0685 2.0845 -3.3178 38 1 0.4950 2.0216 1.2976 39 1 1.8622 3.1491 1.1300 40 1 1.3662 2.7352 3.7462 41 1 1.8485 -0.5589 5.5492 42 1 0.6055 0.7650 5.5378 43 1 4.3131 0.4391 6.9146 44 1 5.1713 -2.2904 10.4042 45 1 4.1005 3.3049 7.3879 46 1 4.7739 2.8851 5.7529 47 1 3.2698 4.4593 4.6289 48 1 3.2522 5.2976 6.2403 49 1 1.0564 3.6588 5.3098 50 1 1.4531 3.8558 7.0723 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203514471.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:39:53 Heat of formation + Delta-G solvation = 9.746830 kcal Electronic energy + Delta-G solvation = -26885.177696 eV Core-core repulsion = 23334.576565 eV Total energy + Delta-G solvation = -3550.601131 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.99620 -40.52822 -38.44297 -36.67811 -35.50346 -34.15908 -32.39485 -32.19982 -31.10990 -27.64035 -26.76441 -26.00848 -25.35912 -24.81897 -24.03688 -21.69226 -21.45495 -20.85702 -20.05941 -18.98345 -17.87329 -17.46944 -17.22252 -16.77607 -16.61467 -16.30280 -15.98488 -15.80872 -15.28546 -14.76318 -14.74422 -14.59414 -14.02906 -13.97567 -13.90330 -13.65786 -13.40024 -13.16374 -13.07094 -13.03108 -12.93423 -12.83201 -12.76977 -12.49081 -12.34410 -12.27036 -11.96907 -11.92419 -11.86939 -11.48586 -11.35626 -11.22398 -10.99342 -10.72076 -10.62852 -9.89376 -9.29561 -9.16757 -8.06339 -5.38215 1.32926 1.35293 1.41378 1.70790 2.11938 2.43196 3.05983 3.23832 3.30016 3.39610 3.74042 3.83352 3.90714 3.96539 4.00347 4.06719 4.13054 4.18036 4.27881 4.35855 4.38610 4.48124 4.54571 4.57823 4.61174 4.69639 4.75665 4.82101 4.86833 4.95797 5.00764 5.01380 5.06694 5.09955 5.13004 5.16457 5.20019 5.23483 5.25391 5.41205 5.46240 5.58517 5.71533 5.76296 6.01707 6.18533 6.19653 6.69478 7.04117 7.39411 7.81947 7.98801 9.15170 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.016389 B = 0.003495 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.009485 B = 8008.546005 C = 8700.494123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.042 3.958 3 N -0.541 5.541 4 C 0.046 3.954 5 C -0.146 4.146 6 C 0.038 3.962 7 C 0.505 3.495 8 O -0.573 6.573 9 N -0.702 5.702 10 C 0.164 3.836 11 H 0.071 0.929 12 C -0.172 4.172 13 C 0.168 3.832 14 H 0.071 0.929 15 N -0.732 5.732 16 C -0.226 4.226 17 H 0.064 0.936 18 C -0.058 4.058 19 N -0.980 5.980 20 Si 0.944 3.056 21 H -0.273 1.273 22 H -0.295 1.295 23 H -0.266 1.266 24 C -0.118 4.118 25 C -0.135 4.135 26 C -0.121 4.121 27 C -0.095 4.095 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.047 0.953 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.129 0.871 40 H 0.415 0.585 41 H 0.037 0.963 42 H 0.103 0.897 43 H 0.362 0.638 44 H 0.258 0.742 45 H 0.074 0.926 46 H 0.048 0.952 47 H 0.088 0.912 48 H 0.081 0.919 49 H 0.093 0.907 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.970 16.842 -23.748 31.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.086 4.086 3 N -0.265 5.265 4 C -0.081 4.081 5 C -0.203 4.203 6 C -0.093 4.093 7 C 0.293 3.707 8 O -0.452 6.452 9 N -0.355 5.355 10 C 0.059 3.941 11 H 0.089 0.911 12 C -0.214 4.214 13 C 0.058 3.942 14 H 0.089 0.911 15 N -0.372 5.372 16 C -0.356 4.356 17 H 0.082 0.918 18 C -0.250 4.250 19 N -0.631 5.631 20 Si 0.772 3.228 21 H -0.199 1.199 22 H -0.221 1.221 23 H -0.192 1.192 24 C -0.120 4.120 25 C -0.173 4.173 26 C -0.158 4.158 27 C -0.132 4.132 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.106 0.894 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.147 0.853 40 H 0.254 0.746 41 H 0.056 0.944 42 H 0.121 0.879 43 H 0.195 0.805 44 H 0.067 0.933 45 H 0.092 0.908 46 H 0.067 0.933 47 H 0.106 0.894 48 H 0.099 0.901 49 H 0.111 0.889 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.991 16.071 -23.655 30.293 hybrid contribution 0.393 -0.751 0.229 0.878 sum -9.599 15.320 -23.426 29.591 Atomic orbital electron populations 1.22365 0.96918 1.02838 1.02301 1.22211 0.93578 0.90136 1.02632 1.61878 1.60617 1.02410 1.01624 1.22246 0.98350 0.98680 0.88808 1.21752 1.00373 1.01014 0.97197 1.22086 0.99546 0.99938 0.87695 1.21288 0.81170 0.83013 0.85273 1.90686 1.37974 1.29992 1.86523 1.45830 1.48297 1.36471 1.04909 1.21748 0.95873 0.93874 0.82643 0.91076 1.24144 1.00036 0.98682 0.98526 1.21049 0.88833 0.91160 0.93149 0.91087 1.42425 1.09796 1.55992 1.29004 1.19070 0.96964 1.19414 1.00198 0.91803 1.25355 1.01168 0.99916 0.98524 1.69853 1.31006 1.36432 1.25785 0.85576 0.81029 0.77195 0.79005 1.19890 1.22141 1.19192 1.23459 0.99897 0.94091 0.94600 1.22689 0.96206 0.97556 1.00861 1.22782 0.95135 0.96781 1.01141 1.22544 0.96506 0.90925 1.03242 0.92516 0.90891 0.92005 0.90761 0.92182 0.92893 0.89443 0.93283 0.93400 0.90522 0.89246 0.85308 0.74642 0.94383 0.87893 0.80476 0.93315 0.90757 0.93299 0.89358 0.90070 0.88871 0.88838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.89 9.28 71.98 0.67 -2.23 16 2 C 0.04 0.90 5.57 86.30 0.48 1.38 16 3 N -0.54 -10.39 4.41 -900.76 -3.97 -14.36 16 4 C 0.05 0.58 5.55 86.30 0.48 1.06 16 5 C -0.15 -1.91 9.96 71.98 0.72 -1.19 16 6 C 0.04 0.60 5.23 85.56 0.45 1.05 16 7 C 0.51 12.71 7.54 87.66 0.66 13.38 16 8 O -0.57 -20.95 13.96 -3.02 -0.04 -21.00 16 9 N -0.70 -15.16 5.31 -440.69 -2.34 -17.50 16 10 C 0.16 4.97 4.01 45.38 0.18 5.15 16 11 H 0.07 2.77 7.54 -2.38 -0.02 2.75 16 12 C -0.17 -5.76 7.68 31.23 0.24 -5.52 16 13 C 0.17 6.25 4.35 45.28 0.20 6.45 16 14 H 0.07 2.67 8.11 -2.38 -0.02 2.65 16 15 N -0.73 -34.96 4.91 -321.56 -1.58 -36.54 16 16 C -0.23 -13.02 10.45 84.03 0.88 -12.14 16 17 H 0.06 3.98 8.06 -2.91 -0.02 3.95 16 18 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 19 N -0.98 -63.83 13.97 21.65 0.30 -63.53 16 20 Si 0.94 47.85 27.74 68.60 1.90 49.75 16 21 H -0.27 -13.29 7.11 99.48 0.71 -12.58 16 22 H -0.29 -15.09 7.11 99.48 0.71 -14.38 16 23 H -0.27 -12.93 6.52 99.48 0.65 -12.29 16 24 C -0.12 -3.27 0.92 -52.21 -0.05 -3.31 16 25 C -0.14 -3.75 7.46 30.89 0.23 -3.52 16 26 C -0.12 -2.21 8.08 31.23 0.25 -1.96 16 27 C -0.09 -1.72 7.46 30.88 0.23 -1.49 16 28 H 0.06 0.86 6.24 -2.39 -0.01 0.84 16 29 H 0.07 0.89 6.29 -2.39 -0.02 0.87 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.53 6.60 -2.39 -0.02 1.52 16 32 H 0.06 1.75 5.86 -2.39 -0.01 1.74 16 33 H 0.05 0.54 5.89 -2.39 -0.01 0.53 16 34 H 0.09 0.84 7.81 -2.38 -0.02 0.82 16 35 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.05 0.69 6.71 -2.39 -0.02 0.67 16 37 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.09 1.03 6.02 -2.39 -0.01 1.02 16 39 H 0.13 1.32 7.86 -2.39 -0.02 1.31 16 40 H 0.41 5.62 6.69 -92.71 -0.62 5.00 16 41 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.10 2.79 8.14 -2.38 -0.02 2.77 16 43 H 0.36 17.36 5.64 -92.71 -0.52 16.83 16 44 H 0.26 16.04 8.31 -92.70 -0.77 15.27 16 45 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 46 H 0.05 1.46 8.14 -2.39 -0.02 1.45 16 47 H 0.09 1.41 8.14 -2.39 -0.02 1.40 16 48 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.09 1.12 6.43 -2.39 -0.02 1.10 16 50 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -76.84 381.55 0.09 -76.74 By element: Atomic # 1 Polarization: 32.62 SS G_CDS: -0.26 Total: 32.35 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: 6.08 Total: -5.93 kcal Atomic # 7 Polarization: -124.34 SS G_CDS: -7.59 Total: -131.93 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.04 Total: -21.00 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 1.90 Total: 49.75 kcal Total: -76.84 0.09 -76.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203514471.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.491 kcal (2) G-P(sol) polarization free energy of solvation -76.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds