Wall clock time and date at job start Tue Mar 31 2020 09:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.36983 * 2 1 4 4 C 1.54381 * 110.32432 * 122.18531 * 2 1 3 5 5 N 1.48554 * 104.59589 * 142.74426 * 4 2 1 6 6 C 1.46905 * 111.00233 * 200.96081 * 5 4 2 7 7 C 1.48563 * 104.22306 * 320.51482 * 5 4 2 8 8 C 1.54269 * 110.31933 * 237.81721 * 2 1 3 9 9 H 1.08995 * 110.32177 * 0.10747 * 8 2 1 10 10 C 1.50696 * 110.31833 * 122.21008 * 8 2 1 11 11 O 1.21273 * 120.00714 * 0.02562 * 10 8 2 12 12 N 1.34781 * 119.99486 * 179.97438 * 10 8 2 13 13 C 1.46925 * 120.62606 * 179.97438 * 12 10 8 14 14 C 1.53193 * 108.77644 * 233.63068 * 13 12 10 15 15 C 1.53041 * 109.31540 * 305.36848 * 14 13 12 16 16 C 1.52997 * 109.46398 * 181.38429 * 15 14 13 17 17 N 1.46505 * 109.47212 * 174.97252 * 16 15 14 18 18 C 1.36936 * 119.99992 * 179.97438 * 17 16 15 19 19 H 1.08006 * 119.99834 * 0.02562 * 18 17 16 20 20 C 1.38801 * 120.00093 * 180.02562 * 18 17 16 21 21 N 1.31622 * 120.00145 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00180 * 0.02562 * 20 18 17 23 23 H 1.48492 * 109.47586 * 89.99558 * 22 20 18 24 24 H 1.48505 * 109.47293 * 210.00502 * 22 20 18 25 25 H 1.48505 * 109.46772 * 329.99807 * 22 20 18 26 26 C 1.53046 * 109.52676 * 61.36755 * 15 14 13 27 27 C 1.46926 * 120.63223 * 0.02691 * 12 10 8 28 28 H 1.08996 * 109.47321 * 182.18207 * 1 2 3 29 29 H 1.09000 * 109.46692 * 302.18072 * 1 2 3 30 30 H 1.08996 * 109.47193 * 62.17469 * 1 2 3 31 31 H 1.09002 * 110.41192 * 261.52336 * 4 2 1 32 32 H 1.09002 * 110.40796 * 23.84838 * 4 2 1 33 33 H 1.09000 * 109.47062 * 60.12444 * 6 5 4 34 34 H 1.08997 * 109.47255 * 180.12905 * 6 5 4 35 35 H 1.09002 * 109.46999 * 300.12734 * 6 5 4 36 36 H 1.09003 * 110.41227 * 280.70543 * 7 5 4 37 37 H 1.08998 * 110.41404 * 158.26108 * 7 5 4 38 38 H 1.09003 * 109.58466 * 113.84812 * 13 12 10 39 39 H 1.08995 * 109.70809 * 353.49334 * 13 12 10 40 40 H 1.09000 * 109.49770 * 185.41931 * 14 13 12 41 41 H 1.08998 * 109.52651 * 65.33357 * 14 13 12 42 42 H 1.08999 * 109.46305 * 301.36118 * 15 14 13 43 43 H 1.09002 * 109.47153 * 54.97245 * 16 15 14 44 44 H 1.09001 * 109.46832 * 294.97436 * 16 15 14 45 45 H 0.96996 * 119.99606 * 0.02562 * 17 16 15 46 46 H 0.97010 * 119.99864 * 180.02562 * 21 20 18 47 47 H 1.09003 * 109.49191 * 58.58163 * 26 15 14 48 48 H 1.09000 * 109.50021 * 178.67966 * 26 15 14 49 49 H 1.09007 * 109.58421 * 246.15473 * 27 12 10 50 50 H 1.09000 * 109.58636 * 6.43566 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0662 -0.7711 1.2252 5 7 3.2693 -1.4830 0.7224 6 6 3.6067 -2.6219 1.5867 7 6 2.8805 -1.9423 -0.6359 8 6 2.0657 -0.7705 -1.2244 9 1 1.2387 -1.1470 -1.8263 10 6 2.9538 0.1194 -2.0552 11 8 3.1519 1.2664 -1.7149 12 7 3.5288 -0.3598 -3.1760 13 6 4.3967 0.4958 -3.9967 14 6 3.8868 0.4743 -5.4411 15 6 3.7949 -0.9750 -5.9240 16 6 3.3189 -0.9988 -7.3778 17 7 3.3455 -2.3755 -7.8780 18 6 2.9585 -2.6445 -9.1637 19 1 2.6339 -1.8416 -9.8091 20 6 2.9832 -3.9490 -9.6374 21 7 2.6116 -4.2075 -10.8733 22 14 3.5438 -5.3377 -8.5209 23 1 2.3742 -5.8885 -7.7904 24 1 4.1665 -6.4096 -9.3386 25 1 4.5367 -4.8189 -7.5461 26 6 2.8015 -1.7436 -5.0495 27 6 3.2988 -1.7473 -3.6010 28 1 -0.3634 -1.0269 0.0391 29 1 -0.3633 0.5473 0.8698 30 1 -0.3633 0.4797 -0.9088 31 1 2.3395 -0.0780 2.0209 32 1 1.3220 -1.4834 1.5815 33 1 2.7717 -3.3222 1.6074 34 1 4.4923 -3.1239 1.1971 35 1 3.8065 -2.2647 2.5970 36 1 2.2646 -2.8394 -0.5720 37 1 3.7668 -2.1310 -1.2416 38 1 5.4186 0.1178 -3.9643 39 1 4.3725 1.5168 -3.6158 40 1 4.5767 1.0271 -6.0787 41 1 2.9004 0.9359 -5.4862 42 1 4.7767 -1.4435 -5.8557 43 1 3.9773 -0.3785 -7.9860 44 1 2.3014 -0.6116 -7.4333 45 1 3.6366 -3.0966 -7.2982 46 1 2.6286 -5.1192 -11.2043 47 1 1.8253 -1.2609 -5.0977 48 1 2.7188 -2.7695 -5.4084 49 1 4.2310 -2.3086 -3.5363 50 1 2.5498 -2.2075 -2.9566 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206282129.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:02 Heat of formation + Delta-G solvation = -22.587016 kcal Electronic energy + Delta-G solvation = -26870.855784 eV Core-core repulsion = 23318.852552 eV Total energy + Delta-G solvation = -3552.003232 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.90592 -38.93479 -37.55531 -35.13957 -33.69879 -33.00985 -31.60052 -30.69684 -30.00372 -27.39425 -27.01182 -25.32583 -23.67125 -23.37550 -22.07702 -21.48507 -20.82312 -19.97341 -19.05607 -17.67875 -17.09144 -16.44852 -16.10052 -15.49019 -14.98116 -14.82701 -14.67900 -14.41228 -14.18174 -14.10095 -13.61590 -13.46648 -13.31578 -13.13530 -12.99036 -12.76549 -12.48854 -12.44060 -12.39330 -12.16196 -11.91096 -11.71932 -11.41484 -11.34354 -11.22437 -11.09499 -10.95189 -10.88166 -10.55895 -10.42284 -10.25159 -10.10639 -9.74120 -9.59978 -8.91660 -8.87104 -8.67693 -7.24418 -5.78549 -3.13893 2.56076 2.88329 3.33468 3.34952 3.42062 3.64454 4.13247 4.20895 4.37085 4.56327 4.69217 4.77011 4.85220 4.88543 4.92666 4.96809 5.05677 5.07373 5.12407 5.20000 5.23367 5.26213 5.34857 5.36690 5.44049 5.45173 5.48403 5.52217 5.55693 5.68605 5.72905 5.73377 5.82307 5.84403 5.90506 6.06377 6.09539 6.11905 6.28617 6.33279 6.41581 6.51168 6.61216 6.68511 6.79123 7.33709 7.98271 8.11588 8.40640 9.19823 9.91999 10.12093 11.40102 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.018580 B = 0.003176 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.659220 B = 8812.769206 C = 9483.587602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.106 0.894 4 C 0.037 3.963 5 N -0.514 5.514 6 C 0.013 3.987 7 C 0.039 3.961 8 C -0.113 4.113 9 H 0.105 0.895 10 C 0.531 3.469 11 O -0.540 6.540 12 N -0.608 5.608 13 C 0.113 3.887 14 C -0.125 4.125 15 C -0.098 4.098 16 C 0.162 3.838 17 N -0.755 5.755 18 C -0.243 4.243 19 H 0.089 0.911 20 C 0.003 3.997 21 N -0.935 5.935 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.277 1.277 26 C -0.128 4.128 27 C 0.103 3.897 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.046 0.954 33 H 0.029 0.971 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.027 0.973 44 H 0.027 0.973 45 H 0.360 0.640 46 H 0.259 0.741 47 H 0.068 0.932 48 H 0.081 0.919 49 H 0.070 0.930 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.569 5.618 25.908 26.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.124 0.876 4 C -0.091 4.091 5 N -0.237 5.237 6 C -0.136 4.136 7 C -0.090 4.090 8 C -0.134 4.134 9 H 0.123 0.877 10 C 0.319 3.681 11 O -0.417 6.417 12 N -0.341 5.341 13 C -0.009 4.009 14 C -0.164 4.164 15 C -0.117 4.117 16 C 0.035 3.965 17 N -0.401 5.401 18 C -0.373 4.373 19 H 0.107 0.893 20 C -0.193 4.193 21 N -0.583 5.583 22 Si 0.714 3.286 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.166 4.166 27 C -0.019 4.019 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.045 0.955 44 H 0.044 0.956 45 H 0.193 0.807 46 H 0.069 0.931 47 H 0.087 0.913 48 H 0.099 0.901 49 H 0.088 0.912 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.052 6.599 25.848 26.677 hybrid contribution -0.311 -1.912 0.531 2.008 sum -0.362 4.687 26.379 26.794 Atomic orbital electron populations 1.21860 0.94190 1.01714 1.02381 1.21953 0.95524 1.01664 0.91766 0.87605 1.23238 0.90904 0.97296 0.97635 1.65392 1.33470 1.22863 1.02009 1.22521 1.00694 0.92402 0.97936 1.23239 0.99183 0.95227 0.91306 1.22139 0.98075 0.96089 0.97134 0.87746 1.20245 0.79865 0.87705 0.80328 1.90633 1.62101 1.18893 1.70090 1.48074 1.48616 1.13074 1.24348 1.21607 0.92918 0.95997 0.90362 1.21899 1.02290 0.97156 0.95032 1.21359 0.99254 0.94979 0.96082 1.20650 0.98011 0.87495 0.90311 1.42727 1.81332 1.03129 1.12937 1.19072 1.36275 0.94255 0.87669 0.89278 1.24679 1.01506 0.96959 0.96134 1.69706 1.54090 1.19520 1.15010 0.86554 0.78547 0.83080 0.80402 1.21074 1.21718 1.20348 1.21951 0.99493 1.02162 0.92983 1.21923 1.01324 0.81954 0.96727 0.92766 0.92129 0.92111 0.89912 0.93570 0.95239 0.91110 0.91139 0.92609 0.89321 0.91620 0.89139 0.90469 0.91422 0.91030 0.95502 0.95551 0.80728 0.93069 0.91297 0.90081 0.91198 0.89943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.92 37.16 0.33 -0.75 16 2 C -0.09 -0.84 3.24 -89.23 -0.29 -1.13 16 3 H 0.11 1.26 6.46 -51.93 -0.34 0.92 16 4 C 0.04 0.31 6.04 -2.18 -0.01 0.30 16 5 N -0.51 -4.89 5.66 -238.23 -1.35 -6.24 16 6 C 0.01 0.10 9.53 60.07 0.57 0.67 16 7 C 0.04 0.34 4.79 -2.18 -0.01 0.33 16 8 C -0.11 -1.10 2.16 -90.39 -0.20 -1.30 16 9 H 0.10 0.90 7.18 -51.93 -0.37 0.52 16 10 C 0.53 6.74 7.01 -10.99 -0.08 6.66 16 11 O -0.54 -8.59 14.67 5.56 0.08 -8.51 16 12 N -0.61 -7.13 2.94 -172.80 -0.51 -7.64 16 13 C 0.11 1.33 6.43 -3.71 -0.02 1.31 16 14 C -0.13 -1.52 5.36 -26.61 -0.14 -1.66 16 15 C -0.10 -1.38 2.19 -90.58 -0.20 -1.58 16 16 C 0.16 3.02 5.65 -4.04 -0.02 3.00 16 17 N -0.76 -17.44 5.12 -59.91 -0.31 -17.75 16 18 C -0.24 -6.82 10.47 -15.06 -0.16 -6.98 16 19 H 0.09 2.70 8.06 -52.48 -0.42 2.27 16 20 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 21 N -0.94 -29.29 13.97 55.49 0.78 -28.51 16 22 Si 0.88 21.62 27.74 -169.99 -4.71 16.91 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 26 C -0.13 -1.65 5.25 -26.63 -0.14 -1.79 16 27 C 0.10 1.08 4.96 -3.73 -0.02 1.06 16 28 H 0.05 0.36 8.10 -51.93 -0.42 -0.06 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 33 H 0.03 0.19 7.97 -51.93 -0.41 -0.22 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.42 7.90 -51.93 -0.41 0.01 16 37 H 0.09 0.83 6.40 -51.93 -0.33 0.50 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 1.14 7.01 -51.93 -0.36 0.78 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.36 7.99 4.71 -40.82 -0.19 7.79 16 46 H 0.26 7.71 8.31 -40.82 -0.34 7.38 16 47 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.08 1.15 7.15 -51.93 -0.37 0.78 16 49 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.08 0.71 5.10 -51.93 -0.27 0.45 16 LS Contribution 376.18 15.07 5.67 5.67 Total: -1.00 -33.18 376.18 -9.80 -42.97 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -8.96 Total: 4.97 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -0.48 Total: -1.86 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: -1.39 Total: -60.14 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.08 Total: -8.51 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.71 Total: 16.91 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.18 -9.80 -42.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206282129.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.386 kcal (2) G-P(sol) polarization free energy of solvation -33.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds