Wall clock time and date at job start Tue Mar 31 2020 09:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.36983 * 2 1 4 4 C 1.54381 * 110.32432 * 122.18531 * 2 1 3 5 5 N 1.48554 * 104.59589 * 142.74426 * 4 2 1 6 6 C 1.46905 * 111.00233 * 200.96081 * 5 4 2 7 7 C 1.48563 * 104.22306 * 320.51482 * 5 4 2 8 8 C 1.54269 * 110.31933 * 237.81721 * 2 1 3 9 9 H 1.08995 * 110.32177 * 0.10747 * 8 2 1 10 10 C 1.50696 * 110.31833 * 122.21008 * 8 2 1 11 11 O 1.21273 * 120.00714 * 0.02562 * 10 8 2 12 12 N 1.34781 * 119.99486 * 179.97438 * 10 8 2 13 13 C 1.46925 * 120.62606 * 179.97438 * 12 10 8 14 14 C 1.53193 * 108.77644 * 233.63068 * 13 12 10 15 15 C 1.53041 * 109.31540 * 305.36848 * 14 13 12 16 16 C 1.52997 * 109.46398 * 181.38429 * 15 14 13 17 17 N 1.46505 * 109.47212 * 174.97252 * 16 15 14 18 18 C 1.36936 * 119.99992 * 179.97438 * 17 16 15 19 19 H 1.08006 * 119.99834 * 0.02562 * 18 17 16 20 20 C 1.38801 * 120.00093 * 180.02562 * 18 17 16 21 21 N 1.31622 * 120.00145 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00180 * 0.02562 * 20 18 17 23 23 H 1.48492 * 109.47586 * 89.99558 * 22 20 18 24 24 H 1.48505 * 109.47293 * 210.00502 * 22 20 18 25 25 H 1.48505 * 109.46772 * 329.99807 * 22 20 18 26 26 C 1.53046 * 109.52676 * 61.36755 * 15 14 13 27 27 C 1.46926 * 120.63223 * 0.02691 * 12 10 8 28 28 H 1.08996 * 109.47321 * 182.18207 * 1 2 3 29 29 H 1.09000 * 109.46692 * 302.18072 * 1 2 3 30 30 H 1.08996 * 109.47193 * 62.17469 * 1 2 3 31 31 H 1.09002 * 110.41192 * 261.52336 * 4 2 1 32 32 H 1.09002 * 110.40796 * 23.84838 * 4 2 1 33 33 H 1.09000 * 109.47062 * 60.12444 * 6 5 4 34 34 H 1.08997 * 109.47255 * 180.12905 * 6 5 4 35 35 H 1.09002 * 109.46999 * 300.12734 * 6 5 4 36 36 H 1.09003 * 110.41227 * 280.70543 * 7 5 4 37 37 H 1.08998 * 110.41404 * 158.26108 * 7 5 4 38 38 H 1.09003 * 109.58466 * 113.84812 * 13 12 10 39 39 H 1.08995 * 109.70809 * 353.49334 * 13 12 10 40 40 H 1.09000 * 109.49770 * 185.41931 * 14 13 12 41 41 H 1.08998 * 109.52651 * 65.33357 * 14 13 12 42 42 H 1.08999 * 109.46305 * 301.36118 * 15 14 13 43 43 H 1.09002 * 109.47153 * 54.97245 * 16 15 14 44 44 H 1.09001 * 109.46832 * 294.97436 * 16 15 14 45 45 H 0.96996 * 119.99606 * 0.02562 * 17 16 15 46 46 H 0.97010 * 119.99864 * 180.02562 * 21 20 18 47 47 H 1.09003 * 109.49191 * 58.58163 * 26 15 14 48 48 H 1.09000 * 109.50021 * 178.67966 * 26 15 14 49 49 H 1.09007 * 109.58421 * 246.15473 * 27 12 10 50 50 H 1.09000 * 109.58636 * 6.43566 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0662 -0.7711 1.2252 5 7 3.2693 -1.4830 0.7224 6 6 3.6067 -2.6219 1.5867 7 6 2.8805 -1.9423 -0.6359 8 6 2.0657 -0.7705 -1.2244 9 1 1.2387 -1.1470 -1.8263 10 6 2.9538 0.1194 -2.0552 11 8 3.1519 1.2664 -1.7149 12 7 3.5288 -0.3598 -3.1760 13 6 4.3967 0.4958 -3.9967 14 6 3.8868 0.4743 -5.4411 15 6 3.7949 -0.9750 -5.9240 16 6 3.3189 -0.9988 -7.3778 17 7 3.3455 -2.3755 -7.8780 18 6 2.9585 -2.6445 -9.1637 19 1 2.6339 -1.8416 -9.8091 20 6 2.9832 -3.9490 -9.6374 21 7 2.6116 -4.2075 -10.8733 22 14 3.5438 -5.3377 -8.5209 23 1 2.3742 -5.8885 -7.7904 24 1 4.1665 -6.4096 -9.3386 25 1 4.5367 -4.8189 -7.5461 26 6 2.8015 -1.7436 -5.0495 27 6 3.2988 -1.7473 -3.6010 28 1 -0.3634 -1.0269 0.0391 29 1 -0.3633 0.5473 0.8698 30 1 -0.3633 0.4797 -0.9088 31 1 2.3395 -0.0780 2.0209 32 1 1.3220 -1.4834 1.5815 33 1 2.7717 -3.3222 1.6074 34 1 4.4923 -3.1239 1.1971 35 1 3.8065 -2.2647 2.5970 36 1 2.2646 -2.8394 -0.5720 37 1 3.7668 -2.1310 -1.2416 38 1 5.4186 0.1178 -3.9643 39 1 4.3725 1.5168 -3.6158 40 1 4.5767 1.0271 -6.0787 41 1 2.9004 0.9359 -5.4862 42 1 4.7767 -1.4435 -5.8557 43 1 3.9773 -0.3785 -7.9860 44 1 2.3014 -0.6116 -7.4333 45 1 3.6366 -3.0966 -7.2982 46 1 2.6286 -5.1192 -11.2043 47 1 1.8253 -1.2609 -5.0977 48 1 2.7188 -2.7695 -5.4084 49 1 4.2310 -2.3086 -3.5363 50 1 2.5498 -2.2075 -2.9566 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206282129.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:01 Heat of formation + Delta-G solvation = -45.582411 kcal Electronic energy + Delta-G solvation = -26871.852939 eV Core-core repulsion = 23318.852552 eV Total energy + Delta-G solvation = -3553.000387 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.77711 -39.79393 -38.61587 -36.69378 -34.56899 -34.33868 -32.98647 -32.13833 -30.80837 -28.47306 -27.89670 -26.17740 -25.08041 -24.36414 -23.34869 -22.41818 -21.87290 -20.93471 -20.00948 -19.58541 -18.04043 -17.35540 -16.84451 -16.63811 -16.25795 -15.97080 -15.69187 -15.53998 -15.40289 -15.17623 -14.85303 -14.51955 -14.32660 -14.09802 -13.94669 -13.88986 -13.66055 -13.40477 -13.30859 -13.08813 -12.98371 -12.80662 -12.73053 -12.35379 -12.20826 -12.17235 -11.97905 -11.86572 -11.77860 -11.68236 -11.63398 -11.40728 -11.38981 -10.95593 -10.70875 -9.65285 -9.46881 -9.28377 -8.01614 -5.35561 1.38601 1.44001 1.51497 1.62001 1.98876 2.50391 3.05040 3.29700 3.38765 3.49744 3.56682 3.62865 3.78390 3.88312 4.05618 4.15269 4.16827 4.19479 4.32511 4.36615 4.44501 4.49957 4.51744 4.56024 4.56478 4.64163 4.71067 4.76525 4.77390 4.82529 4.85401 4.86064 4.92452 5.01832 5.02126 5.07225 5.10969 5.13782 5.25052 5.25889 5.39503 5.49776 5.58992 5.76519 5.80988 6.03532 6.22196 6.41550 7.09502 7.17109 7.84841 8.06143 9.20262 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.018580 B = 0.003176 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.659220 B = 8812.769206 C = 9483.587602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 H 0.075 0.925 4 C 0.041 3.959 5 N -0.539 5.539 6 C 0.014 3.986 7 C 0.042 3.958 8 C -0.111 4.111 9 H 0.121 0.879 10 C 0.525 3.475 11 O -0.580 6.580 12 N -0.608 5.608 13 C 0.116 3.884 14 C -0.116 4.116 15 C -0.087 4.087 16 C 0.160 3.840 17 N -0.754 5.754 18 C -0.237 4.237 19 H 0.050 0.950 20 C -0.068 4.068 21 N -0.987 5.987 22 Si 0.958 3.042 23 H -0.272 1.272 24 H -0.298 1.298 25 H -0.246 1.246 26 C -0.126 4.126 27 C 0.109 3.891 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.040 0.960 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.078 0.922 43 H 0.020 0.980 44 H 0.018 0.982 45 H 0.368 0.632 46 H 0.258 0.742 47 H 0.062 0.938 48 H 0.073 0.927 49 H 0.085 0.915 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.202 3.949 28.728 28.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 H 0.093 0.907 4 C -0.086 4.086 5 N -0.263 5.263 6 C -0.134 4.134 7 C -0.086 4.086 8 C -0.132 4.132 9 H 0.138 0.862 10 C 0.314 3.686 11 O -0.460 6.460 12 N -0.340 5.340 13 C -0.007 4.007 14 C -0.154 4.154 15 C -0.106 4.106 16 C 0.034 3.966 17 N -0.400 5.400 18 C -0.368 4.368 19 H 0.068 0.932 20 C -0.259 4.259 21 N -0.638 5.638 22 Si 0.785 3.215 23 H -0.198 1.198 24 H -0.225 1.225 25 H -0.170 1.170 26 C -0.164 4.164 27 C -0.013 4.013 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.038 0.962 44 H 0.036 0.964 45 H 0.202 0.798 46 H 0.067 0.933 47 H 0.081 0.919 48 H 0.092 0.908 49 H 0.103 0.897 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.324 4.952 28.706 29.132 hybrid contribution -0.443 -1.251 -0.418 1.391 sum -0.119 3.701 28.288 28.529 Atomic orbital electron populations 1.21821 0.92728 1.02688 1.02391 1.21900 0.96705 1.00069 0.92300 0.90690 1.23204 0.91048 0.97404 0.96982 1.65370 1.34131 1.24086 1.02719 1.22540 1.01154 0.91973 0.97754 1.23247 0.99169 0.95283 0.90924 1.22201 0.98041 0.96011 0.96980 0.86162 1.20807 0.79727 0.87537 0.80498 1.90619 1.63528 1.20733 1.71115 1.48168 1.48146 1.13606 1.24054 1.21560 0.93647 0.95783 0.89686 1.21802 1.02201 0.95851 0.95577 1.21250 0.99703 0.96556 0.93115 1.20793 0.97560 0.85069 0.93206 1.42669 1.80957 1.05186 1.11213 1.19031 1.35181 0.93368 0.89217 0.93157 1.25594 1.02306 1.00098 0.97877 1.69911 1.56199 1.20091 1.17598 0.85360 0.78928 0.78650 0.78596 1.19823 1.22517 1.17016 1.21908 0.98897 1.01236 0.94363 1.21992 1.02754 0.81324 0.95241 0.91265 0.91388 0.92865 0.90327 0.91876 0.94100 0.90972 0.90786 0.90500 0.89668 0.90275 0.90237 0.89641 0.92214 0.90366 0.96169 0.96383 0.79781 0.93341 0.91906 0.90799 0.89671 0.87641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.92 71.98 0.64 -1.17 16 2 C -0.09 -1.58 3.24 -9.89 -0.03 -1.61 16 3 H 0.07 1.80 6.46 -2.39 -0.02 1.79 16 4 C 0.04 0.62 6.04 86.45 0.52 1.14 16 5 N -0.54 -9.02 5.66 -907.61 -5.14 -14.16 16 6 C 0.01 0.17 9.53 127.69 1.22 1.38 16 7 C 0.04 0.61 4.79 86.45 0.41 1.03 16 8 C -0.11 -1.92 2.16 -10.64 -0.02 -1.95 16 9 H 0.12 1.69 7.18 -2.39 -0.02 1.67 16 10 C 0.52 12.67 7.01 87.65 0.61 13.28 16 11 O -0.58 -18.51 14.67 -3.01 -0.04 -18.56 16 12 N -0.61 -13.01 2.94 -818.99 -2.41 -15.42 16 13 C 0.12 2.53 6.43 86.36 0.56 3.09 16 14 C -0.12 -2.64 5.36 30.67 0.16 -2.48 16 15 C -0.09 -2.30 2.19 -10.77 -0.02 -2.32 16 16 C 0.16 5.84 5.65 86.38 0.49 6.33 16 17 N -0.75 -34.00 5.12 -343.45 -1.76 -35.76 16 18 C -0.24 -13.47 10.47 84.03 0.88 -12.59 16 19 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 20 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 21 N -0.99 -63.27 13.97 21.65 0.30 -62.96 16 22 Si 0.96 43.81 27.74 68.60 1.90 45.71 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 25 H -0.25 -9.86 6.52 99.48 0.65 -9.21 16 26 C -0.13 -2.92 5.25 30.66 0.16 -2.76 16 27 C 0.11 1.91 4.96 86.35 0.43 2.34 16 28 H 0.07 0.70 8.10 -2.39 -0.02 0.69 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 0.73 7.66 -2.39 -0.02 0.71 16 33 H 0.04 0.39 7.97 -2.39 -0.02 0.38 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.08 0.82 7.90 -2.39 -0.02 0.80 16 37 H 0.09 1.31 6.40 -2.39 -0.02 1.29 16 38 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.08 1.96 7.01 -2.39 -0.02 1.94 16 40 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.37 15.35 4.71 -92.71 -0.44 14.91 16 46 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 47 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.07 1.86 7.15 -2.39 -0.02 1.85 16 49 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 50 H 0.11 1.40 5.10 -2.39 -0.01 1.38 16 Total: -1.00 -73.57 376.18 -0.26 -73.83 By element: Atomic # 1 Polarization: 26.68 SS G_CDS: 0.41 Total: 27.09 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 6.47 Total: 0.22 kcal Atomic # 7 Polarization: -119.30 SS G_CDS: -9.00 Total: -128.30 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.04 Total: -18.56 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.90 Total: 45.71 kcal Total: -73.57 -0.26 -73.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206282129.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.249 kcal (2) G-P(sol) polarization free energy of solvation -73.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds