Wall clock time and date at job start Tue Mar 31 2020 09:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 110.90897 * 2 1 4 4 C 1.54914 * 110.98855 * 236.14012 * 2 1 3 5 5 N 1.47844 * 104.79594 * 204.83680 * 4 2 1 6 6 C 1.46895 * 111.00017 * 146.36266 * 5 4 2 7 7 C 1.47446 * 108.56478 * 24.09720 * 5 4 2 8 8 C 1.54318 * 107.23493 * 359.00600 * 7 5 4 9 9 H 1.09003 * 110.70286 * 96.27592 * 8 7 5 10 10 C 1.50696 * 110.70507 * 219.33433 * 8 7 5 11 11 O 1.21279 * 119.99958 * 97.69593 * 10 8 7 12 12 N 1.34778 * 119.99948 * 277.68722 * 10 8 7 13 13 C 1.46919 * 120.63196 * 355.04952 * 12 10 8 14 14 C 1.53193 * 108.77874 * 233.58058 * 13 12 10 15 15 C 1.53039 * 109.31128 * 305.37113 * 14 13 12 16 16 C 1.52997 * 109.45826 * 181.38342 * 15 14 13 17 17 N 1.46500 * 109.47284 * 174.97093 * 16 15 14 18 18 C 1.36939 * 120.00175 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00023 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00006 * 180.02562 * 18 17 16 21 21 N 1.31621 * 120.00021 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 120.00008 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.46991 * 270.00316 * 22 20 18 24 24 H 1.48497 * 109.47073 * 150.00367 * 22 20 18 25 25 H 1.48497 * 109.46999 * 30.00543 * 22 20 18 26 26 C 1.53034 * 109.53278 * 61.36683 * 15 14 13 27 27 C 1.46924 * 120.62688 * 175.02429 * 12 10 8 28 28 H 1.08998 * 109.46905 * 296.12975 * 1 2 3 29 29 H 1.09003 * 109.46816 * 56.12646 * 1 2 3 30 30 H 1.08999 * 109.46753 * 176.12469 * 1 2 3 31 31 H 1.09001 * 110.37265 * 86.00861 * 4 2 1 32 32 H 1.08999 * 110.46757 * 323.71692 * 4 2 1 33 33 H 1.09003 * 109.47402 * 299.15750 * 6 5 4 34 34 H 1.09006 * 109.47176 * 59.15737 * 6 5 4 35 35 H 1.09000 * 109.47213 * 179.16002 * 6 5 4 36 36 H 1.09003 * 109.88672 * 239.59857 * 7 5 4 37 37 H 1.09000 * 109.88980 * 118.41879 * 7 5 4 38 38 H 1.09007 * 109.58663 * 113.79630 * 13 12 10 39 39 H 1.08999 * 109.59030 * 353.37031 * 13 12 10 40 40 H 1.08994 * 109.50425 * 185.41320 * 14 13 12 41 41 H 1.09006 * 109.49540 * 65.31526 * 14 13 12 42 42 H 1.09000 * 109.45785 * 301.35143 * 15 14 13 43 43 H 1.09002 * 109.47714 * 54.96477 * 16 15 14 44 44 H 1.09001 * 109.47312 * 294.96735 * 16 15 14 45 45 H 0.97001 * 119.99759 * 359.97438 * 17 16 15 46 46 H 0.97003 * 119.99928 * 179.97438 * 21 20 18 47 47 H 1.08999 * 109.49963 * 58.57780 * 26 15 14 48 48 H 1.08996 * 109.50305 * 178.67670 * 26 15 14 49 49 H 1.09007 * 109.58401 * 246.19982 * 27 12 10 50 50 H 1.08996 * 109.59335 * 6.48537 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0849 -0.8059 -1.2011 5 7 3.4313 -1.2420 -0.7734 6 6 3.7611 -2.5587 -1.3348 7 6 3.4692 -1.2712 0.7003 8 6 2.0858 -0.8072 1.2026 9 1 1.4486 -1.6638 1.4227 10 6 2.2279 0.0746 2.4163 11 8 2.2028 1.2811 2.2955 12 7 2.3827 -0.4775 3.6360 13 6 2.3068 -1.9339 3.8135 14 6 1.2730 -2.2450 4.9003 15 6 1.6294 -1.4743 6.1735 16 6 0.6185 -1.8092 7.2720 17 7 1.0268 -1.1669 8.5237 18 6 0.2699 -1.3263 9.6538 19 1 -0.6282 -1.9253 9.6221 20 6 0.6564 -0.7172 10.8397 21 7 -0.0713 -0.8701 11.9257 22 14 2.2095 0.3194 10.8943 23 1 3.3668 -0.5411 11.2487 24 1 2.0561 1.3875 11.9145 25 1 2.4402 0.9359 9.5632 26 6 1.5934 0.0289 5.8886 27 6 2.6312 0.3658 4.8132 28 1 -0.3633 0.4526 0.9226 29 1 -0.3633 0.5728 -0.8533 30 1 -0.3633 -1.0253 -0.0695 31 1 2.1544 -0.1710 -2.0844 32 1 1.4529 -1.6702 -1.4047 33 1 3.0398 -3.2956 -0.9811 34 1 3.7257 -2.5090 -2.4231 35 1 4.7625 -2.8489 -1.0166 36 1 4.2422 -0.5946 1.0648 37 1 3.6682 -2.2856 1.0460 38 1 3.2816 -2.3164 4.1164 39 1 2.0038 -2.4010 2.8765 40 1 1.2758 -3.3147 5.1098 41 1 0.2831 -1.9435 4.5577 42 1 2.6295 -1.7578 6.5016 43 1 0.5802 -2.8894 7.4135 44 1 -0.3672 -1.4457 6.9818 45 1 1.8336 -0.6292 8.5523 46 1 0.1990 -0.4447 12.7545 47 1 0.6005 0.3088 5.5365 48 1 1.8244 0.5779 6.8014 49 1 3.6324 0.1707 5.1976 50 1 2.5447 1.4161 4.5353 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206282133.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:07 Heat of formation + Delta-G solvation = -23.419301 kcal Electronic energy + Delta-G solvation = -26702.052314 eV Core-core repulsion = 23150.012991 eV Total energy + Delta-G solvation = -3552.039323 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.88439 -39.05432 -37.61862 -35.16239 -33.67274 -32.92825 -31.50590 -30.93801 -30.05449 -27.48588 -27.02156 -25.37889 -23.77885 -23.34896 -21.99302 -21.38762 -21.01650 -20.06189 -19.02862 -17.85722 -17.33268 -16.35274 -16.08533 -15.23269 -15.18135 -14.72370 -14.65762 -14.52301 -14.14989 -14.08354 -13.81836 -13.69143 -13.39745 -13.11788 -12.92188 -12.87404 -12.61774 -12.51243 -12.29554 -12.17147 -11.96156 -11.89945 -11.51306 -11.33852 -11.26511 -11.06785 -10.95997 -10.90333 -10.56853 -10.42410 -10.29234 -10.09512 -9.81176 -9.58823 -8.90881 -8.78055 -8.72008 -7.23877 -5.77849 -3.13261 2.44543 2.82031 3.35893 3.38207 3.44416 3.54738 4.03750 4.16533 4.37995 4.51656 4.57883 4.70681 4.82854 4.83923 4.87863 4.92216 4.94441 5.00926 5.10036 5.13297 5.22246 5.23966 5.32790 5.37607 5.39062 5.44885 5.45659 5.53098 5.58899 5.64180 5.65698 5.76202 5.79255 5.86606 5.92961 5.97312 6.03317 6.11464 6.22052 6.36312 6.46291 6.52773 6.60335 6.65303 6.77235 7.27180 7.98447 8.03848 8.41281 9.20402 9.92759 10.12612 11.40676 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.028346 B = 0.002738 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.558320 B =10225.258434 C =10290.932915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 H 0.102 0.898 4 C 0.045 3.955 5 N -0.533 5.533 6 C 0.019 3.981 7 C 0.059 3.941 8 C -0.131 4.131 9 H 0.099 0.901 10 C 0.527 3.473 11 O -0.538 6.538 12 N -0.608 5.608 13 C 0.107 3.893 14 C -0.127 4.127 15 C -0.098 4.098 16 C 0.163 3.837 17 N -0.755 5.755 18 C -0.244 4.244 19 H 0.089 0.911 20 C 0.003 3.997 21 N -0.935 5.935 22 Si 0.885 3.115 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.277 1.277 26 C -0.126 4.126 27 C 0.110 3.890 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.028 0.972 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.027 0.973 44 H 0.026 0.974 45 H 0.360 0.640 46 H 0.259 0.741 47 H 0.067 0.933 48 H 0.081 0.919 49 H 0.066 0.934 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.485 -3.988 -28.385 29.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.103 4.103 3 H 0.120 0.880 4 C -0.082 4.082 5 N -0.256 5.256 6 C -0.130 4.130 7 C -0.069 4.069 8 C -0.154 4.154 9 H 0.117 0.883 10 C 0.314 3.686 11 O -0.415 6.415 12 N -0.341 5.341 13 C -0.016 4.016 14 C -0.165 4.165 15 C -0.117 4.117 16 C 0.036 3.964 17 N -0.401 5.401 18 C -0.374 4.374 19 H 0.107 0.893 20 C -0.192 4.192 21 N -0.583 5.583 22 Si 0.715 3.285 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.164 4.164 27 C -0.012 4.012 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.045 0.955 44 H 0.043 0.957 45 H 0.193 0.807 46 H 0.069 0.931 47 H 0.085 0.915 48 H 0.099 0.901 49 H 0.084 0.916 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.675 -3.080 -28.480 29.414 hybrid contribution 0.458 -0.029 0.685 0.825 sum 7.133 -3.109 -27.795 28.864 Atomic orbital electron populations 1.21715 0.93893 1.01715 1.02614 1.22245 0.96022 1.00585 0.91481 0.88021 1.23179 0.88130 0.98550 0.98388 1.63566 1.27811 1.26928 1.07321 1.22576 1.00928 0.88887 1.00602 1.22719 0.95399 1.00996 0.87818 1.22683 0.99182 0.99215 0.94272 0.88294 1.20226 0.75882 0.88636 0.83841 1.90682 1.50332 1.14876 1.85568 1.48148 1.71014 1.07584 1.07350 1.21829 1.00089 0.79973 0.99736 1.21909 0.98928 1.00871 0.94837 1.21359 1.00699 0.94719 0.94904 1.20638 0.94945 0.95879 0.84949 1.42724 1.29455 1.60949 1.06989 1.19059 1.05574 1.26430 0.86305 0.89297 1.24681 0.98488 1.00446 0.95620 1.69704 1.39638 1.48591 1.00339 0.86547 0.84278 0.80592 0.77083 1.21097 1.21716 1.20316 1.21935 0.99331 0.96681 0.98454 1.21706 0.98678 0.96034 0.84804 0.92032 0.91985 0.92744 0.89794 0.93198 0.95318 0.91186 0.91207 0.90014 0.91869 0.91121 0.90095 0.90341 0.91329 0.91006 0.95532 0.95655 0.80669 0.93060 0.91455 0.90054 0.91560 0.89101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.31 37.16 0.35 -0.79 16 2 C -0.08 -0.76 2.87 -88.48 -0.25 -1.01 16 3 H 0.10 1.16 7.23 -51.93 -0.38 0.78 16 4 C 0.04 0.34 6.20 -2.30 -0.01 0.33 16 5 N -0.53 -4.43 5.44 -239.51 -1.30 -5.74 16 6 C 0.02 0.11 9.12 60.06 0.55 0.66 16 7 C 0.06 0.49 6.48 -2.83 -0.02 0.48 16 8 C -0.13 -1.19 1.84 -89.95 -0.17 -1.35 16 9 H 0.10 0.75 6.33 -51.93 -0.33 0.43 16 10 C 0.53 6.44 6.80 -10.99 -0.07 6.36 16 11 O -0.54 -8.54 15.12 5.56 0.08 -8.45 16 12 N -0.61 -6.92 2.97 -172.77 -0.51 -7.43 16 13 C 0.11 0.95 6.32 -3.71 -0.02 0.93 16 14 C -0.13 -1.34 5.36 -26.61 -0.14 -1.49 16 15 C -0.10 -1.37 2.19 -90.58 -0.20 -1.57 16 16 C 0.16 3.03 5.65 -4.04 -0.02 3.01 16 17 N -0.76 -17.67 5.12 -59.91 -0.31 -17.98 16 18 C -0.24 -6.91 10.47 -15.06 -0.16 -7.06 16 19 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 20 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 21 N -0.93 -29.48 13.97 55.49 0.78 -28.70 16 22 Si 0.88 22.08 27.74 -169.99 -4.71 17.36 16 23 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 26 C -0.13 -1.81 5.25 -26.61 -0.14 -1.95 16 27 C 0.11 1.40 6.44 -3.71 -0.02 1.38 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.37 8.08 -51.93 -0.42 -0.05 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.33 7.63 -51.93 -0.40 -0.07 16 33 H 0.03 0.16 8.10 -51.93 -0.42 -0.26 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.81 7.81 -51.93 -0.41 0.41 16 37 H 0.06 0.43 7.58 -51.93 -0.39 0.03 16 38 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 39 H 0.08 0.55 5.51 -51.93 -0.29 0.27 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.36 8.19 4.71 -40.82 -0.19 8.00 16 46 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 47 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.08 1.32 7.15 -51.93 -0.37 0.95 16 49 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 50 H 0.09 1.27 7.00 -51.93 -0.36 0.91 16 LS Contribution 380.24 15.07 5.73 5.73 Total: -1.00 -33.35 380.24 -9.73 -43.08 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -9.04 Total: 4.23 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -0.44 Total: -2.09 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: -1.35 Total: -59.86 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.08 Total: -8.45 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.71 Total: 17.36 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.35 -9.73 -43.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206282133.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.656 kcal (2) G-P(sol) polarization free energy of solvation -33.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds