Wall clock time and date at job start Tue Mar 31 2020 09:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 110.90897 * 2 1 4 4 C 1.54914 * 110.98855 * 236.14012 * 2 1 3 5 5 N 1.47844 * 104.79594 * 204.83680 * 4 2 1 6 6 C 1.46895 * 111.00017 * 146.36266 * 5 4 2 7 7 C 1.47446 * 108.56478 * 24.09720 * 5 4 2 8 8 C 1.54318 * 107.23493 * 359.00600 * 7 5 4 9 9 H 1.09003 * 110.70286 * 96.27592 * 8 7 5 10 10 C 1.50696 * 110.70507 * 219.33433 * 8 7 5 11 11 O 1.21279 * 119.99958 * 97.69593 * 10 8 7 12 12 N 1.34778 * 119.99948 * 277.68722 * 10 8 7 13 13 C 1.46919 * 120.63196 * 355.04952 * 12 10 8 14 14 C 1.53193 * 108.77874 * 233.58058 * 13 12 10 15 15 C 1.53039 * 109.31128 * 305.37113 * 14 13 12 16 16 C 1.52997 * 109.45826 * 181.38342 * 15 14 13 17 17 N 1.46500 * 109.47284 * 174.97093 * 16 15 14 18 18 C 1.36939 * 120.00175 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00023 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00006 * 180.02562 * 18 17 16 21 21 N 1.31621 * 120.00021 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 120.00008 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.46991 * 270.00316 * 22 20 18 24 24 H 1.48497 * 109.47073 * 150.00367 * 22 20 18 25 25 H 1.48497 * 109.46999 * 30.00543 * 22 20 18 26 26 C 1.53034 * 109.53278 * 61.36683 * 15 14 13 27 27 C 1.46924 * 120.62688 * 175.02429 * 12 10 8 28 28 H 1.08998 * 109.46905 * 296.12975 * 1 2 3 29 29 H 1.09003 * 109.46816 * 56.12646 * 1 2 3 30 30 H 1.08999 * 109.46753 * 176.12469 * 1 2 3 31 31 H 1.09001 * 110.37265 * 86.00861 * 4 2 1 32 32 H 1.08999 * 110.46757 * 323.71692 * 4 2 1 33 33 H 1.09003 * 109.47402 * 299.15750 * 6 5 4 34 34 H 1.09006 * 109.47176 * 59.15737 * 6 5 4 35 35 H 1.09000 * 109.47213 * 179.16002 * 6 5 4 36 36 H 1.09003 * 109.88672 * 239.59857 * 7 5 4 37 37 H 1.09000 * 109.88980 * 118.41879 * 7 5 4 38 38 H 1.09007 * 109.58663 * 113.79630 * 13 12 10 39 39 H 1.08999 * 109.59030 * 353.37031 * 13 12 10 40 40 H 1.08994 * 109.50425 * 185.41320 * 14 13 12 41 41 H 1.09006 * 109.49540 * 65.31526 * 14 13 12 42 42 H 1.09000 * 109.45785 * 301.35143 * 15 14 13 43 43 H 1.09002 * 109.47714 * 54.96477 * 16 15 14 44 44 H 1.09001 * 109.47312 * 294.96735 * 16 15 14 45 45 H 0.97001 * 119.99759 * 359.97438 * 17 16 15 46 46 H 0.97003 * 119.99928 * 179.97438 * 21 20 18 47 47 H 1.08999 * 109.49963 * 58.57780 * 26 15 14 48 48 H 1.08996 * 109.50305 * 178.67670 * 26 15 14 49 49 H 1.09007 * 109.58401 * 246.19982 * 27 12 10 50 50 H 1.08996 * 109.59335 * 6.48537 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0849 -0.8059 -1.2011 5 7 3.4313 -1.2420 -0.7734 6 6 3.7611 -2.5587 -1.3348 7 6 3.4692 -1.2712 0.7003 8 6 2.0858 -0.8072 1.2026 9 1 1.4486 -1.6638 1.4227 10 6 2.2279 0.0746 2.4163 11 8 2.2028 1.2811 2.2955 12 7 2.3827 -0.4775 3.6360 13 6 2.3068 -1.9339 3.8135 14 6 1.2730 -2.2450 4.9003 15 6 1.6294 -1.4743 6.1735 16 6 0.6185 -1.8092 7.2720 17 7 1.0268 -1.1669 8.5237 18 6 0.2699 -1.3263 9.6538 19 1 -0.6282 -1.9253 9.6221 20 6 0.6564 -0.7172 10.8397 21 7 -0.0713 -0.8701 11.9257 22 14 2.2095 0.3194 10.8943 23 1 3.3668 -0.5411 11.2487 24 1 2.0561 1.3875 11.9145 25 1 2.4402 0.9359 9.5632 26 6 1.5934 0.0289 5.8886 27 6 2.6312 0.3658 4.8132 28 1 -0.3633 0.4526 0.9226 29 1 -0.3633 0.5728 -0.8533 30 1 -0.3633 -1.0253 -0.0695 31 1 2.1544 -0.1710 -2.0844 32 1 1.4529 -1.6702 -1.4047 33 1 3.0398 -3.2956 -0.9811 34 1 3.7257 -2.5090 -2.4231 35 1 4.7625 -2.8489 -1.0166 36 1 4.2422 -0.5946 1.0648 37 1 3.6682 -2.2856 1.0460 38 1 3.2816 -2.3164 4.1164 39 1 2.0038 -2.4010 2.8765 40 1 1.2758 -3.3147 5.1098 41 1 0.2831 -1.9435 4.5577 42 1 2.6295 -1.7578 6.5016 43 1 0.5802 -2.8894 7.4135 44 1 -0.3672 -1.4457 6.9818 45 1 1.8336 -0.6292 8.5523 46 1 0.1990 -0.4447 12.7545 47 1 0.6005 0.3088 5.5365 48 1 1.8244 0.5779 6.8014 49 1 3.6324 0.1707 5.1976 50 1 2.5447 1.4161 4.5353 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206282133.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:06 Heat of formation + Delta-G solvation = -46.589787 kcal Electronic energy + Delta-G solvation = -26703.057062 eV Core-core repulsion = 23150.012991 eV Total energy + Delta-G solvation = -3553.044070 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.73561 -39.86950 -38.66531 -36.71621 -34.55364 -34.27892 -32.81125 -32.35774 -30.88091 -28.50208 -27.93249 -26.14297 -25.23889 -24.30850 -23.29912 -22.41560 -21.78621 -21.09214 -19.97891 -19.62493 -18.39663 -17.26763 -16.77954 -16.64759 -16.09077 -15.98131 -15.82832 -15.52767 -15.22699 -15.09483 -14.73669 -14.69457 -14.57978 -14.27292 -14.09010 -13.81474 -13.73619 -13.33426 -13.32756 -13.17638 -13.04143 -12.81424 -12.73202 -12.43743 -12.22586 -12.20513 -12.04391 -11.89325 -11.73392 -11.68462 -11.65876 -11.43482 -11.42976 -10.97673 -10.75614 -9.68640 -9.31014 -9.30018 -8.04389 -5.37468 1.35962 1.39752 1.47014 1.53290 1.94377 2.46815 2.98586 3.27012 3.32539 3.48879 3.56141 3.68934 3.80104 3.84030 3.98729 4.02459 4.15001 4.18182 4.30415 4.31700 4.42875 4.45353 4.50936 4.56784 4.58053 4.68255 4.70149 4.73808 4.78731 4.81851 4.85654 4.92742 4.94349 4.98015 5.05042 5.06755 5.09497 5.12428 5.22971 5.25366 5.34896 5.49047 5.54619 5.74399 5.91369 6.10324 6.19980 6.38932 7.07028 7.12082 7.83771 8.02617 9.17328 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.028346 B = 0.002738 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.558320 B =10225.258434 C =10290.932915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.086 4.086 3 H 0.069 0.931 4 C 0.052 3.948 5 N -0.552 5.552 6 C 0.018 3.982 7 C 0.064 3.936 8 C -0.124 4.124 9 H 0.123 0.877 10 C 0.522 3.478 11 O -0.584 6.584 12 N -0.607 5.607 13 C 0.107 3.893 14 C -0.121 4.121 15 C -0.088 4.088 16 C 0.159 3.841 17 N -0.757 5.757 18 C -0.235 4.235 19 H 0.055 0.945 20 C -0.066 4.066 21 N -0.985 5.985 22 Si 0.955 3.045 23 H -0.275 1.275 24 H -0.297 1.297 25 H -0.251 1.251 26 C -0.120 4.120 27 C 0.116 3.884 28 H 0.039 0.961 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.041 0.959 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.099 0.901 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.030 0.970 44 H 0.015 0.985 45 H 0.366 0.634 46 H 0.258 0.742 47 H 0.052 0.948 48 H 0.060 0.940 49 H 0.081 0.919 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.183 -5.714 -30.891 32.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.106 4.106 3 H 0.087 0.913 4 C -0.075 4.075 5 N -0.276 5.276 6 C -0.130 4.130 7 C -0.064 4.064 8 C -0.146 4.146 9 H 0.141 0.859 10 C 0.311 3.689 11 O -0.464 6.464 12 N -0.339 5.339 13 C -0.014 4.014 14 C -0.159 4.159 15 C -0.106 4.106 16 C 0.033 3.967 17 N -0.403 5.403 18 C -0.366 4.366 19 H 0.073 0.927 20 C -0.257 4.257 21 N -0.636 5.636 22 Si 0.782 3.218 23 H -0.201 1.201 24 H -0.224 1.224 25 H -0.176 1.176 26 C -0.159 4.159 27 C -0.007 4.007 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.129 0.871 40 H 0.117 0.883 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.048 0.952 44 H 0.033 0.967 45 H 0.200 0.800 46 H 0.067 0.933 47 H 0.071 0.929 48 H 0.079 0.921 49 H 0.100 0.900 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.383 -4.848 -31.044 32.520 hybrid contribution -0.168 0.472 1.434 1.519 sum 8.216 -4.376 -29.610 31.039 Atomic orbital electron populations 1.21679 0.93177 1.02826 1.01803 1.22188 0.96600 0.99234 0.92564 0.91255 1.23133 0.88080 0.98884 0.97447 1.63519 1.28279 1.28555 1.07273 1.22624 1.01457 0.87978 1.00917 1.22657 0.94060 1.01693 0.88029 1.22703 1.00235 0.99118 0.92514 0.85886 1.20829 0.74800 0.88446 0.84798 1.90665 1.52372 1.17080 1.86256 1.48246 1.70332 1.08682 1.06632 1.22051 1.00605 0.78243 1.00549 1.21881 0.99265 1.01454 0.93329 1.21276 0.99589 0.94760 0.95025 1.20836 0.95918 0.95470 0.84465 1.42743 1.29081 1.61344 1.07175 1.19048 1.04645 1.24833 0.88052 0.92742 1.25537 1.02443 1.02532 0.95210 1.69891 1.42092 1.50462 1.01118 0.85410 0.79813 0.78562 0.78015 1.20055 1.22431 1.17558 1.21831 0.99080 0.96895 0.98055 1.21528 0.98754 0.95530 0.84904 0.94209 0.91279 0.90782 0.89832 0.91340 0.94087 0.90641 0.90835 0.92181 0.89429 0.89157 0.87115 0.88262 0.91822 0.90093 0.95185 0.96739 0.80038 0.93342 0.92932 0.92122 0.90038 0.90956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.31 71.98 0.67 -1.33 16 2 C -0.09 -1.45 2.87 -9.41 -0.03 -1.48 16 3 H 0.07 1.63 7.23 -2.39 -0.02 1.61 16 4 C 0.05 0.66 6.20 86.78 0.54 1.20 16 5 N -0.55 -7.79 5.44 -911.67 -4.96 -12.75 16 6 C 0.02 0.16 9.12 127.69 1.16 1.33 16 7 C 0.06 0.90 6.48 86.65 0.56 1.46 16 8 C -0.12 -1.94 1.84 -10.36 -0.02 -1.96 16 9 H 0.12 1.34 6.33 -2.39 -0.02 1.32 16 10 C 0.52 12.18 6.80 87.66 0.60 12.78 16 11 O -0.58 -18.93 15.12 -3.03 -0.05 -18.98 16 12 N -0.61 -12.52 2.97 -818.91 -2.43 -14.96 16 13 C 0.11 1.46 6.32 86.36 0.55 2.00 16 14 C -0.12 -2.14 5.36 30.67 0.16 -1.98 16 15 C -0.09 -2.27 2.19 -10.77 -0.02 -2.29 16 16 C 0.16 5.76 5.65 86.38 0.49 6.25 16 17 N -0.76 -34.98 5.12 -343.45 -1.76 -36.74 16 18 C -0.23 -13.50 10.47 84.03 0.88 -12.62 16 19 H 0.05 3.44 8.06 -2.91 -0.02 3.42 16 20 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 21 N -0.98 -63.76 13.97 21.65 0.30 -63.46 16 22 Si 0.96 45.59 27.74 68.60 1.90 47.49 16 23 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 24 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 25 H -0.25 -10.76 6.52 99.48 0.65 -10.12 16 26 C -0.12 -3.35 5.25 30.67 0.16 -3.19 16 27 C 0.12 2.82 6.44 86.36 0.56 3.37 16 28 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.78 8.08 -2.39 -0.02 0.76 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 0.63 7.63 -2.39 -0.02 0.61 16 33 H 0.04 0.28 8.10 -2.39 -0.02 0.26 16 34 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.06 1.11 7.81 -2.39 -0.02 1.09 16 37 H 0.09 0.79 7.58 -2.39 -0.02 0.78 16 38 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.11 0.91 5.51 -2.39 -0.01 0.90 16 40 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 42 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 43 H 0.03 1.08 8.14 -2.39 -0.02 1.07 16 44 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.37 16.04 4.71 -92.71 -0.44 15.60 16 46 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 47 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.06 1.93 7.15 -2.39 -0.02 1.92 16 49 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 50 H 0.07 2.05 7.00 -2.39 -0.02 2.03 16 Total: -1.00 -75.61 380.24 0.13 -75.47 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: 0.41 Total: 23.84 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: 6.72 Total: 0.08 kcal Atomic # 7 Polarization: -119.06 SS G_CDS: -8.85 Total: -127.91 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.05 Total: -18.98 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.90 Total: 47.49 kcal Total: -75.61 0.13 -75.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206282133.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.885 kcal (2) G-P(sol) polarization free energy of solvation -75.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds