Wall clock time and date at job start Tue Mar 31 2020 09:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47840 * 111.00231 * 2 1 4 4 C 1.54909 * 104.79761 * 146.36257 * 3 2 1 5 5 C 1.55136 * 101.65391 * 322.93596 * 4 3 2 6 6 H 1.08995 * 110.85332 * 277.19838 * 5 4 3 7 7 C 1.53001 * 110.70810 * 154.03354 * 5 4 3 8 8 C 1.50698 * 109.47063 * 179.97438 * 7 5 4 9 9 O 1.21282 * 120.00035 * 359.97438 * 8 7 5 10 10 N 1.34778 * 119.99707 * 179.97438 * 8 7 5 11 11 C 1.46925 * 120.62854 * 179.97438 * 10 8 7 12 12 C 1.53187 * 108.77688 * 126.36839 * 11 10 8 13 13 C 1.53046 * 109.31043 * 54.63722 * 12 11 10 14 14 C 1.53001 * 109.46008 * 178.63085 * 13 12 11 15 15 N 1.46504 * 109.47119 * 185.02860 * 14 13 12 16 16 C 1.36932 * 120.00017 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00014 * 0.02562 * 16 15 14 18 18 C 1.38815 * 120.00277 * 179.97438 * 16 15 14 19 19 N 1.31626 * 119.99485 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00453 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46961 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47142 * 120.00224 * 20 18 16 23 23 H 1.48500 * 109.47244 * 240.00829 * 20 18 16 24 24 C 1.53043 * 109.53475 * 298.63386 * 13 12 11 25 25 C 1.46921 * 120.63351 * 359.97438 * 10 8 7 26 26 C 1.47439 * 111.00071 * 120.84691 * 2 1 3 27 27 H 1.09003 * 109.47044 * 299.15244 * 1 2 3 28 28 H 1.09004 * 109.47101 * 59.15040 * 1 2 3 29 29 H 1.09003 * 109.47388 * 179.15586 * 1 2 3 30 30 H 1.08998 * 110.38022 * 265.19503 * 3 2 1 31 31 H 1.09001 * 110.37274 * 27.43013 * 3 2 1 32 32 H 1.08998 * 110.99373 * 204.84007 * 4 3 2 33 33 H 1.09006 * 110.98734 * 81.02471 * 4 3 2 34 34 H 1.08996 * 109.46929 * 59.94066 * 7 5 4 35 35 H 1.09003 * 109.46629 * 299.94237 * 7 5 4 36 36 H 1.09003 * 109.59222 * 6.58108 * 11 10 8 37 37 H 1.09000 * 109.58691 * 246.15998 * 11 10 8 38 38 H 1.08996 * 109.50293 * 294.68191 * 12 11 10 39 39 H 1.09001 * 109.50064 * 174.58451 * 12 11 10 40 40 H 1.09002 * 109.46068 * 58.65418 * 13 12 11 41 41 H 1.09008 * 109.46952 * 305.01991 * 14 13 12 42 42 H 1.08994 * 109.47471 * 65.02498 * 14 13 12 43 43 H 0.96995 * 120.00092 * 359.97438 * 15 14 13 44 44 H 0.96999 * 119.99688 * 179.97438 * 19 18 16 45 45 H 1.09004 * 109.49679 * 181.31796 * 24 13 12 46 46 H 1.08994 * 109.49744 * 301.41312 * 24 13 12 47 47 H 1.09002 * 109.58756 * 353.41101 * 25 10 8 48 48 H 1.09001 * 109.59125 * 113.69997 * 25 10 8 49 49 H 1.09006 * 109.88868 * 117.33423 * 26 2 1 50 50 H 1.08999 * 109.89044 * 356.14491 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3802 0.0000 4 6 3.3048 1.3026 0.8296 5 6 2.9159 0.2820 1.9314 6 1 2.3754 0.7722 2.7410 7 6 4.1570 -0.4340 2.4679 8 6 3.7482 -1.4166 3.5349 9 8 2.5793 -1.5323 3.8368 10 7 4.6816 -2.1666 4.1536 11 6 4.2985 -3.1284 5.1961 12 6 4.8667 -4.5034 4.8313 13 6 6.3764 -4.3846 4.6098 14 6 6.9530 -5.7626 4.2786 15 7 8.4122 -5.6717 4.1848 16 6 9.1506 -6.7881 3.8960 17 1 8.6572 -7.7356 3.7370 18 6 10.5331 -6.7020 3.8065 19 7 11.1343 -5.5471 3.9998 20 14 11.5405 -8.2251 3.4134 21 1 10.6331 -9.3881 3.2426 22 1 12.3027 -8.0040 2.1583 23 1 12.4863 -8.4939 4.5262 24 6 6.6494 -3.4256 3.4488 25 6 6.1014 -2.0381 3.7983 26 6 1.9974 -0.7058 1.1817 27 1 -0.3633 0.5006 0.8975 28 1 -0.3633 0.5270 -0.8823 29 1 -0.3634 -1.0276 -0.0151 30 1 2.2148 1.7039 -1.0182 31 1 1.2882 2.0595 0.4707 32 1 3.5496 2.2719 1.2640 33 1 4.1303 0.9281 0.2242 34 1 4.8442 0.2983 2.8917 35 1 4.6496 -0.9662 1.6541 36 1 3.2118 -3.1869 5.2580 37 1 4.7044 -2.8081 6.1557 38 1 4.3922 -4.8626 3.9182 39 1 4.6722 -5.2045 5.6429 40 1 6.8473 -4.0019 5.5153 41 1 6.6828 -6.4680 5.0645 42 1 6.5484 -6.1066 3.3268 43 1 8.8553 -4.8207 4.3271 44 1 12.1005 -5.4869 3.9377 45 1 7.7237 -3.3595 3.2764 46 1 6.1581 -3.7949 2.5487 47 1 6.2043 -1.3771 2.9377 48 1 6.6537 -1.6267 4.6431 49 1 2.5697 -1.5786 0.8672 50 1 1.1756 -1.0120 1.8290 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206872556.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:52:50 Heat of formation + Delta-G solvation = -32.057992 kcal Electronic energy + Delta-G solvation = -26167.087896 eV Core-core repulsion = 22614.673972 eV Total energy + Delta-G solvation = -3552.413924 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.47650 -39.09896 -37.61645 -34.93508 -33.66755 -32.82466 -31.26891 -30.32564 -30.03727 -27.72363 -26.52237 -25.20226 -23.64824 -23.19360 -21.83752 -21.32309 -20.74029 -19.99087 -18.85014 -17.32856 -16.88849 -16.64192 -15.86429 -15.46245 -15.40914 -14.77717 -14.37875 -14.27641 -14.04077 -13.85103 -13.73830 -13.54690 -13.48057 -13.02477 -12.93865 -12.62488 -12.44369 -12.28077 -12.01370 -11.84782 -11.82264 -11.58615 -11.44269 -11.11744 -11.02155 -11.00078 -10.89972 -10.86242 -10.41333 -10.33026 -10.29107 -9.97951 -9.71367 -9.66116 -8.88786 -8.62899 -8.54706 -6.92574 -5.78439 -3.06310 2.58779 2.95888 3.42269 3.48328 3.50246 3.78974 4.20430 4.35775 4.52803 4.57901 4.65765 4.83441 4.98660 5.01280 5.06825 5.10063 5.14792 5.17449 5.20864 5.22902 5.35004 5.39289 5.41022 5.49336 5.53598 5.54957 5.61221 5.62794 5.64106 5.78853 5.80370 5.87932 5.95124 5.97341 6.06969 6.09603 6.18397 6.27261 6.44050 6.46130 6.63006 6.71432 6.79893 6.81594 6.91224 7.38688 7.69830 8.13429 8.41137 9.52384 10.10396 10.45155 11.44684 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.021913 B = 0.002471 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.448268 B =11327.272154 C =11768.917684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.538 5.538 3 C 0.041 3.959 4 C -0.127 4.127 5 C -0.091 4.091 6 H 0.081 0.919 7 C -0.131 4.131 8 C 0.514 3.486 9 O -0.549 6.549 10 N -0.609 5.609 11 C 0.113 3.887 12 C -0.126 4.126 13 C -0.094 4.094 14 C 0.158 3.842 15 N -0.732 5.732 16 C -0.237 4.237 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.906 3.094 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.125 4.125 25 C 0.105 3.895 26 C 0.052 3.948 27 H 0.026 0.974 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.018 0.982 42 H 0.018 0.982 43 H 0.383 0.617 44 H 0.254 0.746 45 H 0.088 0.912 46 H 0.064 0.936 47 H 0.082 0.918 48 H 0.071 0.929 49 H 0.074 0.926 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.952 15.422 -3.858 23.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.262 5.262 3 C -0.087 4.087 4 C -0.165 4.165 5 C -0.111 4.111 6 H 0.100 0.900 7 C -0.171 4.171 8 C 0.303 3.697 9 O -0.427 6.427 10 N -0.342 5.342 11 C -0.010 4.010 12 C -0.164 4.164 13 C -0.112 4.112 14 C 0.030 3.970 15 N -0.376 5.376 16 C -0.368 4.368 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.584 5.584 20 Si 0.738 3.262 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.163 4.163 25 C -0.018 4.018 26 C -0.075 4.075 27 H 0.045 0.955 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.217 0.783 44 H 0.064 0.936 45 H 0.107 0.893 46 H 0.083 0.917 47 H 0.101 0.899 48 H 0.089 0.911 49 H 0.092 0.908 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.389 14.914 -4.192 24.045 hybrid contribution 0.682 -0.246 0.601 0.942 sum -17.707 14.668 -3.591 23.271 Atomic orbital electron populations 1.22526 0.87817 1.02128 1.00332 1.63582 1.07920 1.14180 1.40541 1.23039 0.95527 0.89677 1.00418 1.22804 0.97939 0.99126 0.96631 1.22127 0.95377 0.96036 0.97564 0.90026 1.21724 0.99231 0.98063 0.98082 1.20650 0.85427 0.81308 0.82315 1.90657 1.17998 1.68511 1.65528 1.48197 1.07625 1.39572 1.38808 1.21603 1.01247 0.88314 0.89809 1.21909 0.96160 0.96075 1.02296 1.21302 0.94348 0.97139 0.98457 1.20673 0.85958 0.92894 0.97453 1.42381 0.99849 1.09905 1.85502 1.19283 0.88924 0.89116 1.39488 0.91214 1.24730 0.96551 0.96923 1.02900 1.69663 1.08650 1.23166 1.56879 0.86122 0.80277 0.82307 0.77539 1.20590 1.21877 1.21894 1.21931 1.02547 0.93251 0.98617 1.21898 0.80163 0.98819 1.00911 1.22864 0.98481 0.96730 0.89474 0.95523 0.91588 0.91362 0.90246 0.93677 0.90672 0.90218 0.88693 0.88361 0.89329 0.91667 0.91620 0.90724 0.91016 0.96386 0.96417 0.78291 0.93600 0.89315 0.91745 0.89925 0.91112 0.90769 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.12 60.06 0.55 0.73 16 2 N -0.54 -5.41 5.44 -239.52 -1.30 -6.72 16 3 C 0.04 0.34 6.73 -2.30 -0.02 0.32 16 4 C -0.13 -0.96 6.52 -24.59 -0.16 -1.12 16 5 C -0.09 -0.85 2.55 -88.80 -0.23 -1.08 16 6 H 0.08 0.85 8.04 -51.93 -0.42 0.43 16 7 C -0.13 -1.19 3.44 -27.88 -0.10 -1.28 16 8 C 0.51 6.31 7.49 -10.99 -0.08 6.23 16 9 O -0.55 -8.32 14.27 5.56 0.08 -8.24 16 10 N -0.61 -7.27 2.97 -172.76 -0.51 -7.78 16 11 C 0.11 1.36 6.43 -3.71 -0.02 1.34 16 12 C -0.13 -1.62 5.36 -26.61 -0.14 -1.76 16 13 C -0.09 -1.42 2.19 -90.57 -0.20 -1.62 16 14 C 0.16 3.09 5.65 -4.04 -0.02 3.07 16 15 N -0.73 -18.05 5.32 -59.91 -0.32 -18.37 16 16 C -0.24 -6.57 9.99 -15.06 -0.15 -6.73 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 18 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 19 N -0.93 -27.80 13.06 55.49 0.72 -27.08 16 20 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 C -0.13 -1.76 5.25 -26.59 -0.14 -1.90 16 25 C 0.10 1.16 6.34 -3.70 -0.02 1.13 16 26 C 0.05 0.56 5.49 -2.84 -0.02 0.55 16 27 H 0.03 0.22 8.10 -51.93 -0.42 -0.20 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.04 0.35 7.78 -51.93 -0.40 -0.06 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.59 8.05 -51.93 -0.42 0.17 16 34 H 0.09 0.70 7.94 -51.93 -0.41 0.29 16 35 H 0.10 0.83 7.61 -51.93 -0.40 0.44 16 36 H 0.09 1.13 7.01 -51.93 -0.36 0.77 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.02 0.37 8.14 -51.92 -0.42 -0.06 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.38 9.77 6.84 -40.82 -0.28 9.49 16 44 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 45 H 0.09 1.43 7.15 -51.93 -0.37 1.06 16 46 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.08 0.74 5.93 -51.93 -0.31 0.43 16 48 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.07 0.87 7.77 -51.93 -0.40 0.47 16 50 H 0.06 0.80 7.11 -51.93 -0.37 0.43 16 LS Contribution 383.16 15.07 5.77 5.77 Total: -1.00 -31.80 383.16 -10.61 -42.41 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -9.18 Total: 5.37 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -0.85 Total: -2.65 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: -1.41 Total: -59.94 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.08 Total: -8.24 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.80 -10.61 -42.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206872556.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.348 kcal (2) G-P(sol) polarization free energy of solvation -31.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds