Wall clock time and date at job start Tue Mar 31 2020 09:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47840 * 111.00231 * 2 1 4 4 C 1.54909 * 104.79761 * 146.36257 * 3 2 1 5 5 C 1.55136 * 101.65391 * 322.93596 * 4 3 2 6 6 H 1.08995 * 110.85332 * 277.19838 * 5 4 3 7 7 C 1.53001 * 110.70810 * 154.03354 * 5 4 3 8 8 C 1.50698 * 109.47063 * 179.97438 * 7 5 4 9 9 O 1.21282 * 120.00035 * 359.97438 * 8 7 5 10 10 N 1.34778 * 119.99707 * 179.97438 * 8 7 5 11 11 C 1.46925 * 120.62854 * 179.97438 * 10 8 7 12 12 C 1.53187 * 108.77688 * 126.36839 * 11 10 8 13 13 C 1.53046 * 109.31043 * 54.63722 * 12 11 10 14 14 C 1.53001 * 109.46008 * 178.63085 * 13 12 11 15 15 N 1.46504 * 109.47119 * 185.02860 * 14 13 12 16 16 C 1.36932 * 120.00017 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00014 * 0.02562 * 16 15 14 18 18 C 1.38815 * 120.00277 * 179.97438 * 16 15 14 19 19 N 1.31626 * 119.99485 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00453 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46961 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47142 * 120.00224 * 20 18 16 23 23 H 1.48500 * 109.47244 * 240.00829 * 20 18 16 24 24 C 1.53043 * 109.53475 * 298.63386 * 13 12 11 25 25 C 1.46921 * 120.63351 * 359.97438 * 10 8 7 26 26 C 1.47439 * 111.00071 * 120.84691 * 2 1 3 27 27 H 1.09003 * 109.47044 * 299.15244 * 1 2 3 28 28 H 1.09004 * 109.47101 * 59.15040 * 1 2 3 29 29 H 1.09003 * 109.47388 * 179.15586 * 1 2 3 30 30 H 1.08998 * 110.38022 * 265.19503 * 3 2 1 31 31 H 1.09001 * 110.37274 * 27.43013 * 3 2 1 32 32 H 1.08998 * 110.99373 * 204.84007 * 4 3 2 33 33 H 1.09006 * 110.98734 * 81.02471 * 4 3 2 34 34 H 1.08996 * 109.46929 * 59.94066 * 7 5 4 35 35 H 1.09003 * 109.46629 * 299.94237 * 7 5 4 36 36 H 1.09003 * 109.59222 * 6.58108 * 11 10 8 37 37 H 1.09000 * 109.58691 * 246.15998 * 11 10 8 38 38 H 1.08996 * 109.50293 * 294.68191 * 12 11 10 39 39 H 1.09001 * 109.50064 * 174.58451 * 12 11 10 40 40 H 1.09002 * 109.46068 * 58.65418 * 13 12 11 41 41 H 1.09008 * 109.46952 * 305.01991 * 14 13 12 42 42 H 1.08994 * 109.47471 * 65.02498 * 14 13 12 43 43 H 0.96995 * 120.00092 * 359.97438 * 15 14 13 44 44 H 0.96999 * 119.99688 * 179.97438 * 19 18 16 45 45 H 1.09004 * 109.49679 * 181.31796 * 24 13 12 46 46 H 1.08994 * 109.49744 * 301.41312 * 24 13 12 47 47 H 1.09002 * 109.58756 * 353.41101 * 25 10 8 48 48 H 1.09001 * 109.59125 * 113.69997 * 25 10 8 49 49 H 1.09006 * 109.88868 * 117.33423 * 26 2 1 50 50 H 1.08999 * 109.89044 * 356.14491 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3802 0.0000 4 6 3.3048 1.3026 0.8296 5 6 2.9159 0.2820 1.9314 6 1 2.3754 0.7722 2.7410 7 6 4.1570 -0.4340 2.4679 8 6 3.7482 -1.4166 3.5349 9 8 2.5793 -1.5323 3.8368 10 7 4.6816 -2.1666 4.1536 11 6 4.2985 -3.1284 5.1961 12 6 4.8667 -4.5034 4.8313 13 6 6.3764 -4.3846 4.6098 14 6 6.9530 -5.7626 4.2786 15 7 8.4122 -5.6717 4.1848 16 6 9.1506 -6.7881 3.8960 17 1 8.6572 -7.7356 3.7370 18 6 10.5331 -6.7020 3.8065 19 7 11.1343 -5.5471 3.9998 20 14 11.5405 -8.2251 3.4134 21 1 10.6331 -9.3881 3.2426 22 1 12.3027 -8.0040 2.1583 23 1 12.4863 -8.4939 4.5262 24 6 6.6494 -3.4256 3.4488 25 6 6.1014 -2.0381 3.7983 26 6 1.9974 -0.7058 1.1817 27 1 -0.3633 0.5006 0.8975 28 1 -0.3633 0.5270 -0.8823 29 1 -0.3634 -1.0276 -0.0151 30 1 2.2148 1.7039 -1.0182 31 1 1.2882 2.0595 0.4707 32 1 3.5496 2.2719 1.2640 33 1 4.1303 0.9281 0.2242 34 1 4.8442 0.2983 2.8917 35 1 4.6496 -0.9662 1.6541 36 1 3.2118 -3.1869 5.2580 37 1 4.7044 -2.8081 6.1557 38 1 4.3922 -4.8626 3.9182 39 1 4.6722 -5.2045 5.6429 40 1 6.8473 -4.0019 5.5153 41 1 6.6828 -6.4680 5.0645 42 1 6.5484 -6.1066 3.3268 43 1 8.8553 -4.8207 4.3271 44 1 12.1005 -5.4869 3.9377 45 1 7.7237 -3.3595 3.2764 46 1 6.1581 -3.7949 2.5487 47 1 6.2043 -1.3771 2.9377 48 1 6.6537 -1.6267 4.6431 49 1 2.5697 -1.5786 0.8672 50 1 1.1756 -1.0120 1.8290 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206872556.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:52:50 Heat of formation + Delta-G solvation = -52.586411 kcal Electronic energy + Delta-G solvation = -26167.978075 eV Core-core repulsion = 22614.673972 eV Total energy + Delta-G solvation = -3553.304103 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.41610 -39.91947 -38.74294 -36.53217 -34.60632 -34.23566 -32.49167 -31.88769 -30.78280 -28.72297 -27.79167 -26.11904 -25.23499 -24.26661 -23.22579 -21.99948 -21.77126 -21.01900 -19.85435 -19.14214 -18.02482 -17.44089 -16.79242 -16.63282 -16.33061 -16.20921 -15.65140 -15.41228 -15.31742 -15.12633 -14.88699 -14.65457 -14.25173 -14.14956 -13.97452 -13.85200 -13.56293 -13.47876 -13.11237 -12.92679 -12.77742 -12.73653 -12.52857 -12.30498 -12.23133 -12.12609 -12.01170 -11.95300 -11.74613 -11.67341 -11.60820 -11.45657 -11.31074 -10.93120 -10.68715 -9.62826 -9.30412 -8.97561 -7.94817 -5.22423 1.48071 1.48215 1.58245 1.65116 2.04034 2.56454 3.08918 3.38815 3.42732 3.66114 3.74639 3.77273 3.83310 3.91201 3.98926 4.15018 4.30067 4.32975 4.37749 4.40303 4.43320 4.45685 4.52604 4.55264 4.60423 4.67772 4.72567 4.80530 4.83128 4.84750 4.86964 4.94084 4.97820 4.97999 5.06918 5.07803 5.12650 5.15007 5.18136 5.31806 5.37103 5.48418 5.54869 5.61087 5.98762 6.10326 6.28585 6.44725 7.19140 7.35319 8.11196 8.35932 9.28709 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.021913 B = 0.002471 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.448268 B =11327.272154 C =11768.917684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.553 5.553 3 C 0.037 3.963 4 C -0.118 4.118 5 C -0.088 4.088 6 H 0.070 0.930 7 C -0.125 4.125 8 C 0.510 3.490 9 O -0.582 6.582 10 N -0.610 5.610 11 C 0.115 3.885 12 C -0.115 4.115 13 C -0.084 4.084 14 C 0.157 3.843 15 N -0.741 5.741 16 C -0.245 4.245 17 H 0.071 0.929 18 C -0.073 4.073 19 N -0.966 5.966 20 Si 0.970 3.030 21 H -0.270 1.270 22 H -0.292 1.292 23 H -0.293 1.293 24 C -0.120 4.120 25 C 0.112 3.888 26 C 0.055 3.945 27 H 0.025 0.975 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.049 0.951 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.121 0.879 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.016 0.984 42 H 0.013 0.987 43 H 0.377 0.623 44 H 0.252 0.748 45 H 0.066 0.934 46 H 0.057 0.943 47 H 0.110 0.890 48 H 0.081 0.919 49 H 0.060 0.940 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.980 16.477 -4.300 24.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.277 5.277 3 C -0.090 4.090 4 C -0.156 4.156 5 C -0.108 4.108 6 H 0.088 0.912 7 C -0.165 4.165 8 C 0.300 3.700 9 O -0.463 6.463 10 N -0.343 5.343 11 C -0.008 4.008 12 C -0.154 4.154 13 C -0.103 4.103 14 C 0.030 3.970 15 N -0.384 5.384 16 C -0.377 4.377 17 H 0.088 0.912 18 C -0.266 4.266 19 N -0.617 5.617 20 Si 0.800 3.200 21 H -0.194 1.194 22 H -0.219 1.219 23 H -0.220 1.220 24 C -0.158 4.158 25 C -0.010 4.010 26 C -0.073 4.073 27 H 0.043 0.957 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.140 0.860 35 H 0.127 0.873 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.034 0.966 42 H 0.031 0.969 43 H 0.210 0.790 44 H 0.061 0.939 45 H 0.085 0.915 46 H 0.076 0.924 47 H 0.128 0.872 48 H 0.099 0.901 49 H 0.079 0.921 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -18.446 15.960 -4.637 24.829 hybrid contribution 0.606 -0.615 0.735 1.134 sum -17.840 15.345 -3.902 23.853 Atomic orbital electron populations 1.22540 0.87270 1.02057 1.00914 1.63590 1.08641 1.15438 1.40031 1.23141 0.95960 0.88658 1.01233 1.22797 0.97655 0.99412 0.95744 1.22072 0.95089 0.96030 0.97598 0.91169 1.21769 0.99558 0.97858 0.97329 1.21231 0.84881 0.81433 0.82440 1.90649 1.19429 1.69576 1.66610 1.48277 1.07984 1.39395 1.38598 1.21552 1.00827 0.87849 0.90536 1.21805 0.94150 0.97066 1.02381 1.21186 0.95548 0.94742 0.98777 1.20816 0.83490 0.95715 0.96974 1.42545 1.01742 1.08879 1.85282 1.19634 0.89547 0.90012 1.38480 0.91151 1.25504 0.97678 0.99707 1.03663 1.69799 1.08598 1.24987 1.58314 0.85120 0.78628 0.79387 0.76909 1.19419 1.21907 1.21994 1.21823 1.01195 0.94983 0.97846 1.21903 0.79424 0.97166 1.02519 1.22745 0.97947 0.96973 0.89595 0.95675 0.90163 0.91885 0.89305 0.93241 0.88755 0.89624 0.86049 0.87291 0.89998 0.90456 0.92304 0.89788 0.91236 0.96598 0.96899 0.79045 0.93949 0.91539 0.92373 0.87194 0.90053 0.92138 0.93970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.12 127.69 1.16 1.51 16 2 N -0.55 -10.67 5.44 -911.70 -4.96 -15.63 16 3 C 0.04 0.54 6.73 86.77 0.58 1.12 16 4 C -0.12 -1.47 6.52 31.98 0.21 -1.26 16 5 C -0.09 -1.51 2.55 -9.61 -0.02 -1.53 16 6 H 0.07 1.38 8.04 -2.39 -0.02 1.36 16 7 C -0.13 -1.98 3.44 29.85 0.10 -1.88 16 8 C 0.51 11.80 7.49 87.66 0.66 12.46 16 9 O -0.58 -17.49 14.27 -3.03 -0.04 -17.53 16 10 N -0.61 -13.51 2.97 -818.86 -2.43 -15.94 16 11 C 0.11 2.63 6.43 86.36 0.56 3.19 16 12 C -0.12 -2.85 5.36 30.67 0.16 -2.69 16 13 C -0.08 -2.48 2.19 -10.76 -0.02 -2.50 16 14 C 0.16 6.13 5.65 86.38 0.49 6.62 16 15 N -0.74 -36.81 5.32 -343.44 -1.83 -38.63 16 16 C -0.24 -13.61 9.99 84.04 0.84 -12.77 16 17 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 18 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 19 N -0.97 -57.87 13.06 21.65 0.28 -57.59 16 20 Si 0.97 45.82 29.55 68.60 2.03 47.84 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 22 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 23 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 24 C -0.12 -3.27 5.25 30.68 0.16 -3.11 16 25 C 0.11 2.22 6.34 86.37 0.55 2.77 16 26 C 0.06 1.19 5.49 86.65 0.48 1.66 16 27 H 0.02 0.42 8.10 -2.39 -0.02 0.40 16 28 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.05 0.67 7.78 -2.39 -0.02 0.65 16 32 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.09 0.99 8.05 -2.38 -0.02 0.98 16 34 H 0.12 1.32 7.94 -2.39 -0.02 1.30 16 35 H 0.11 1.54 7.61 -2.39 -0.02 1.53 16 36 H 0.08 2.03 7.01 -2.39 -0.02 2.02 16 37 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 42 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.38 19.47 6.84 -92.71 -0.63 18.84 16 44 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 45 H 0.07 2.14 7.15 -2.39 -0.02 2.12 16 46 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.11 1.61 5.93 -2.39 -0.01 1.59 16 48 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 49 H 0.06 1.43 7.77 -2.38 -0.02 1.41 16 50 H 0.04 1.08 7.11 -2.39 -0.02 1.06 16 Total: -1.00 -68.47 383.16 -0.33 -68.80 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: 0.26 Total: 28.79 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 6.37 Total: -0.10 kcal Atomic # 7 Polarization: -118.85 SS G_CDS: -8.94 Total: -127.79 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.04 Total: -17.53 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -68.47 -0.33 -68.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206872556.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.209 kcal (2) G-P(sol) polarization free energy of solvation -68.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds